github.com/OpenMS/OpenMS-docs commits | Ecosyste.ms: OpenCollective

Remove duplicated tutorial (#226)

* fix broken links

* relink developer quickstart guide

* update TOPP...

8f1c156d6a6539689f8dd1255f16058e815b0864 authored 11 months ago

Make introduction_lc.png a more reasonable size

81d2a3f127a3437541de7a6ddf64dc49d8530054 authored 11 months ago

Updated PepConsensusId.png

878002c4587c18fd7275c0ca4bec1756ee36e8d3 authored 11 months ago

Update OpenMS logo

5e0e594df960bea87d1bded1c73c0fea73b6c041 authored 11 months ago

new images

8e1d60a314dfc432f450344a6dac19857167edee authored 11 months ago

Update iPRG_lfq with non-transparent background

1b79648ae1696738f42f58a4f9a5e6874dac8c70 authored 11 months ago

Update KNIME Tutorial (#225)

* fix broken links

* relink developer quickstart guide

* update TOPP...

a5f784d5e82ed1e02f70b1ee429e22a8582d85ac authored 11 months ago

Prune dead links (#224)

* Update tutorial.md

* Update openms-user-tutorial.md

* Update tut...

b26767ba4812301fd88250b371c8d82afbe5820a authored 11 months ago

cleanup of 3.1 and 3.2

e569a8fcbc3b3fe9e2238140eac948f6b40e4cc3 authored 12 months ago

Cleanup

5bb77360afda4030cfd2ad56815f8b2c700f2628 authored 12 months ago

reorder metanode tutorial. update procedure for column type assignment and add image to show how

3917e3c1d976c9e898030cebac84990a34ef4f41 authored 12 months ago

fix completely wrong section about fileconversion and replace with fileFilter demo. Add images

9f22c3e32b073c0d61349afcbb59056190626ebd authored 12 months ago

PNG ify updated simple workflows

147f4981391bbfca4fb7834fb26f6564e9367c51 authored 12 months ago

Update minimal workflow

58891e28e7d06f289ccdd670d32143e16eaa2d83 authored 12 months ago

update name of input file node to File Importer

0252023c30e56e2dfa7a3a08e1da4a144765b4b7 authored 12 months ago

remove ref to old KNIME, add description of where OpenMS thirdparty nodes are

f4862035d99b8d5785e3c8449712c0be71aab93c authored 12 months ago

add instructions to install genericknimenodes

7036f6f4cbf932b5ba066023fa544473f2a8eac1 authored 12 months ago

fixes to tutorial

da3615b51871e204c2b46555abfe7e3baf80de6b authored 12 months ago

added hub.knime.com to lycheeignore, something about their security policy prevents lychee from loading.

23780f65d1e4fd0e0c2068098f8b49c65cd25b95 authored 12 months ago

remove embedding of knime hub page that wasn't allowed by csp

0b898c496929e5559044de97b1a6d517cab10e14 authored 12 months ago

remove unnecessary params to website

96bcb45c29b42bc61fe10be1ef38b3fe5a7f19fe authored 12 months ago

fix broken external links

d8455b4c3bcca3ce5d476abb7a4a78ad9088ffa2 authored 12 months ago

added figure to show how to switch back to classic knime interface and instructions on how to do so

bbabd13a47b91bde6048cb3b76b2151f85ee9c9d authored 12 months ago

bump KNIME version

ea322ab680c364c289597d1eecc9d81338b27275 authored 12 months ago

Update tutorial.md (#216)

* Update tutorial.md

Remove refs to OMSSA sin...

adb4f212efbdd1884a0e72313fd1a507f6073871 authored about 1 year ago

Update Knime versions and plugins

Update to KNIME 5

671efdeef6f894b7b0ec86dabf7af77fe83dc23c authored about 1 year ago

Increase Lychee timeout (#214)

Increase Lychee timeout

c7cc5a1596c83a71bbacf8a92dffc11693427f06 authored about 1 year ago

Update downloads.md (#188)

* Update downloads.md

* cleaned up

* removed releases section

* fix broken link

* fi...

2b851d896846ff02238765ff96c49b142a330472 authored about 1 year ago

Add some glossary terms (#213)

* fix some links and expand glossary

99a6ab58ed142f0c5bacbf6aacc1ee63308aee29 authored over 1 year ago

Relink Developer Quickstart Guide (#212)

* relink developer quickstart guide

92940becfb087db5a8d56a4014b3b3840b26e9e1 authored over 1 year ago

Docs toppas (#210)

* fix keyboard shortcut (amends
https://github.com/OpenMS/OpenMS/pull/6703)

* linking to TOP...

de5e6d1d2248755dade26a24bb1d283e6aa50206 authored over 1 year ago

update installer win (#201)

* add Windows defender warning to install instructions

* add image

* Update docs/openms-ap...

d88c71b7530a53231cbcd303954f1046c3bce74c authored over 1 year ago

Fix broken links (#209)

* fix broken links

* circumvent wrong SSL certificate

* get rid of h...

2f132d7335dcfdcc4d26fe10022e4729050935ba authored over 1 year ago

fix a few links (#203)

* fix a few links

* a few more

---------

Co-authored-by: Timo Sachsenberg <timo.sachsen...

32b0c8c3c45475c70710e6a0d8e8800f2158e753 authored over 1 year ago

Update openms-user-tutorial.md (#204)

* Update openms-user-tutorial.md

I have reviewed the tutorial and identified a few minor gram...

2c839282d7e8cb79eb3adae9f515fd78d25f0a23 authored over 1 year ago

remove utils. some minor cleanups (#206)

2bcda50d8ba98fa3905979095583b25925fcd511 authored over 1 year ago

new release cycle

d9544b592d082729da98abe15f8eeac076e2c772 authored over 1 year ago

update PR default text (#202)

* Update PULL_REQUEST_TEMPLATE.md

* Update CONTRIBUTING.md

073626c4313eccb00b20cebd4c326561204c9c6d authored over 1 year ago

update contributors (#199)

616a552bfc1d3e372036e20b5cfe9aaa20dde4e3 authored over 1 year ago

add gmc.js to conf.py

e44c06cd22ea0f402e4085ed5c712854b775b4d2 authored over 1 year ago

nextflow (#200)

* nextflow

* added gmc script

* no end transition

f3882a2724a83698dcfd032d9135a59b1bd4f3ca authored over 1 year ago

Large restructure of docs (#198)

* Huge restructure of the docs

* More restructure

* fix piwik script

* delete old insta...

db3e774f4c231cac1d87b2119a26eec3afb8bf19 authored over 1 year ago

update to version 3.0.0

89221bf3650814f9a652810c9b0d8848a9160e20 authored almost 2 years ago

Piwik scripts added (#181)

* piwik scripts added

* include js the correct way

---------

Co-authored-by: Julianus P...

b66d4c5267404975cc9ba3fb9330ff7667258f2d authored almost 2 years ago

Re-organize quick start guide locations (#195)

* Re-organize quick start guide locations

Both user and contributors quick start guides were ...

9845341586c2416c5b5ec42c155c6ff19fae6835 authored almost 2 years ago

fix keyboard shortcut (#191)

fix keyboard shortcut (amends
https://github.com/OpenMS/OpenMS/pull/6703)

c2af13b2d8d0b90b69d7d7337a6f75ab46a148ee authored almost 2 years ago

update user guide (#192)

* update user guide

* Update openms-user-tutorial.md

*...

41a3252cc80764bf06aba582f36ab8cc80fe5e98 authored almost 2 years ago

show how to correctly reference stuff (#152)

* show how to correctly reference stuff.

* old webserver

18d02aa1afa7f3f924cbe2541b63b3e8759a0e23 authored almost 2 years ago

Update installation-on-gnu-linux.md

e0e7ef2b37f954bc3f44d99f2af675ee71f06ffd authored almost 2 years ago

Update installation-on-macos.md

1a28dea07f5651e3e405b79027913adfc1ca66c9 authored almost 2 years ago

Update openms-user-tutorial.md

1091190c9e1d320ae0941976d3cf18ebec2ad2f1 authored almost 2 years ago

New background (#179)

* added css including video image

* added extended background

* added equation for time of...

ba85a32b6b0ab2adb69b738ee6df1775dbe74266 authored about 2 years ago

Update main.yml

e23a8f2411ff53d3f7f546b8c8dfa7aa0097941e authored about 2 years ago

explicitly state python version

d6d0c6fa991f2ed1dda7e931127902af13a45928 authored about 2 years ago

bump setup-python version

254feb45ab1c62ad687328a0313ba27de1fbbcfc authored about 2 years ago

Do not use deprecated method (#180)

do not use deprecated method

c62e0e34917ec99b70fd0d6cabfcde279cb42ec7 authored about 2 years ago

Update main.yml

ad360e516a95c33d0dc6b22316148fd7e8daca9e authored about 2 years ago

Update requirements.txt

991a2e527d7d017ae5c50ab5e08b2671a1e799a8 authored about 2 years ago

Update requirements.txt

5c71687d9ae52062c5a334147d7a5a43be776839 authored about 2 years ago

Update .readthedocs.yaml

755ed8ed7f308c59bc42a0dc1970d6ef5416af94 authored about 2 years ago

Update openms-user-tutorial.md

8d53108f080f6b3b54a0a35f2d0275d798d3a5bd authored about 2 years ago

Better Installation instructions (#169)

* Major fix of installation instructions

* Fix

* use new tab syntax

* fix links

* fi...

b03e3c8822d7801dea8c238115237156c9b6c213 authored over 2 years ago

Update installation-on-macos.md (#171)

* Update installation-on-macos.md

* restored images

* Update installation-on-macos.md

656c5cbb1cffb8bad9515b63fc4b8dd322a2934d authored over 2 years ago

Modify background (#170)

* modified content of background and added one image of peak map

* added link to openms commu...

96fa2d8fd708d716c6812a117f04f00f00d8ecbe authored over 2 years ago

Change number of cards per row for smaller screens. (#168)

bd70e0b860a2bca72414932911d74da293138181 authored over 2 years ago

FIX invalid file names.. (#166)

* FIX invalid file names..

* wow.. fix everything

59915fefc130eaa0c263e67c1108cc18ad8b6586 authored over 2 years ago

Add logos and cards as initially discussed (#163)

d40a17f3e4c3bc0cc3555ec2c29913a579d78638 authored over 2 years ago

replaced abibuilder.informatik with abibuilder.cs (#165)

deb59ab22d42766210b92293a2856ccce3790e61 authored over 2 years ago

modified entry points title and content and modified image (#162)

* modified entry points title and content and modified image

* added entry points page to index

576196bc029a1bb07b575aa75f70175c57b89d94 authored over 2 years ago

Merge tutorials (#160)

* move metabolomics tutorial inside openms user tutorial

* move metabolomics tutorial inside ...

f70c324527cb53475eddfce1eb2d4bf369e4c34d authored over 2 years ago

Add "user tutorial plus develop" to "develop" (#157)

* Address review comments by @greengypsy

Ref: https://github.com/OpenMS/OpenMS-docs/pull/65.
...

a09072794980c100edbced47611291ff2daf621c authored over 2 years ago

try newer python (#158)

bf8b14421121b920ccc78ce60e1319f317f3f4d8 authored over 2 years ago

Sphinx extension for paths (#150)

* add variables

* Update conf.py

Co-authored-by: Timo Sachsenberg <timo.sachsenberg@uni-tu...

dcb0002ae0753e75731c9bd44ca7abf8d5d3d526 authored over 2 years ago

add and correctly style hoverref (#154)

* correctly style hoverref

* spelling of css var. now the hover underline is dark grey.

6db28398ba928d790ca77b8664f23443fdcb5d22 authored over 2 years ago

add variables (#135)

* add variables

* Update conf.py

Co-authored-by: Timo Sachsenberg <timo.sachsenberg@uni-tu...

c36fac31d7e40a953fad3eee18b99b0025f1216c authored over 2 years ago

tabs errors' on ReadTheDocs epub format support (#147)

* tabs error

ref: https://github.com/OpenMS/OpenMS-docs/pull/146

* Fix css not found

* ...

1f4f6b292b6b0ad5d11ccb1b4b22e823320ed122 authored over 2 years ago

Update CI build params to keep going (#151)

* Update CI build params to keep going

* use make mode

1c6bd49fd44f71245643b1fa9cb8379048285be1 authored over 2 years ago

CI (#148)

* CI

* remove comment

* add link checking of the final html

* comment

7a176aadfbd4d346565d21253af22f93294e1a16 authored over 2 years ago

fix rtd build failure (#146)

if triggered build from a new branch rtd build errors. could be because
it builds all files not...

859d45c3f129f32dc80708f09a1af9ba24fc5604 authored over 2 years ago

Merge pull request #144 from tapaswenipathak/main-branch

Add latest/main ready docs

00279c0f459933eb8337e62457be6734bbe99b0e authored over 2 years ago

Add latest/main ready docs

Adds offline documentation support, default page, instructions to build
locally and a few introd...

013a249e9752028fb14942de291815a8840e822d authored over 2 years ago

Converting the masses. (#105)

* Converting the masses.

* Update docs/introduction.md

Co-authored-by: Tapasweni Pathak <t...

f825580cf075a80e6b12807ce31a39d6ca934e00 authored over 2 years ago

PRs to develop (#137)

d039875437570050498cc64d64197e08f4e1e9ab authored over 2 years ago

Further corrected documents placed within 120 chars, Ref 73. (#110)

* more introduction.md edits

* introduction.md complete

* Fixed Additional Resources, Doc ...

958a2ae15a3ae23cc1b351242f5449373419cb69 authored over 2 years ago

Lines within 120 characters for several documents. Ref 73. (#108)

* more introduction.md edits

* introduction.md complete

* Fixed Additional Resources, Doc ...

b36e02355cdc7f9063e2355cd48150f7e81db03b authored over 2 years ago

Create codeql-analysis.yml

b8641b6a395fc2ec8aa4136da3214b63537b1843 authored over 2 years ago

https://openms.readthedocs.io/en/develop

609cdb6959644308eccd3c867cfcbaa6808fc960 authored over 2 years ago

admonition indent

f17bfdaa3e668ba4d8da2aecadb3c0b1c40c3867 authored over 2 years ago

Address review comments by @matchy233, @pranavich18, and @axelwalter. (#84)

* Address review comments by @matchy233, @pranavich18, and @axelwalter.

Ref https://github.co...

fde80240e8fcbae2bb69d1bb534d1df37dc79d66 authored over 2 years ago

a few fixes here and there for staging to main merge (#87)

* Address review comments by @greengypsy

Ref: https://github.com/OpenMS/OpenMS-docs/pull/65.
...

61abe5ac1917f84fd2aeda8a4da1dc7ed900f4c9 authored over 2 years ago

add: remaining toppview-introduction content

Closes https://github.com/OpenMS/OpenMS-docs/issues/76.

dccf2841504c3745c6fe32ef41a9f37d7afd2a37 authored over 2 years ago

fix: grammatical errors docs/guides/user-guides/user-quickstart-guide.md

Co-authored-by: Eugen Netz <[email protected]>

c690e51b77c5f38dc93ccb83c31b03609eac8077 authored over 2 years ago

fix: grammatical errors docs/installations/installation-on-gnu-linux.md

Co-authored-by: Eugen Netz <[email protected]>

3bbb4b447e4d1754b1fae05034a2a29dd191ddf1 authored over 2 years ago

fix: grammatical errors docs/installations/installation-on-gnu-linux.md

Co-authored-by: Eugen Netz <[email protected]>

30f7541f4350f32d1157cae3169e5db122dfda83 authored over 2 years ago

Address review comments by @enetz and @jpfeuffer (#83)

Ref https://github.com/OpenMS/OpenMS-docs/pull/65.

a6c592bcf71d5e6c2b43d1d62fa7fedbdf712f7a authored over 2 years ago

Address review comments by @timosachsenberg (#78)

Ref: https://github.com/OpenMS/OpenMS-docs/pull/65.

f3a6dc8fe8c7e2e6b9f44b5ab121d6bcaf82ed86 authored over 2 years ago

Address review comments by @greengypsy (#77)

Ref: https://github.com/OpenMS/OpenMS-docs/pull/65.

5493c1eadc19ed1fec4b22c21b9085bdf633bca2 authored over 2 years ago

Address review comments by @erik-whiting (#82)

Ref https://github.com/OpenMS/OpenMS-docs/pull/65.

6ea8049f85f248d124e4dde10257943234a627fc authored over 2 years ago

fixup: use :term: in .rst!

d4bbf8ecd240ec58d1cc067f3aa2b0286565e2c1 authored over 2 years ago

fixes: improvements: touchup and cleanup (#64)

5097262ddaffdd3f8f62f0922920eb1f886e1651 authored over 2 years ago