github.com/OpenMS/streamlit-template commits | Ecosyste.ms: OpenCollective

Update StreamlitUI.py

moved check if input files are in list to correct position

914b702d6db520ba26db53f71d1509503724a2a0 authored 8 months ago by axelwalter <[email protected]>

fix upload file error in online mode

5809ed54406a541d37646fbb2581b9347b1745a3 authored 8 months ago by axelwalter <[email protected]>

Merge pull request #41 from axelwalter/main

Framework for TOPP tool workflows

2490777a6cd860bdb0135af4221adb3eb51cf70c authored 8 months ago by axelwalter <[email protected]>

pylint errors

59a05d27f3f8c9de1973114c445ad6580f407605 authored 8 months ago by axelwalter <[email protected]>

remove streamlit from all workflow classes except for StreamlitUI, rework Files to FileManager

b6030e887ecba5325b7e5aed5685d653aa426312 authored 8 months ago by axelwalter <[email protected]>

address review comments by JeeH-K

7c939da4e6caf0ef560669ca922db0aa9567842b authored 8 months ago by axelwalter <[email protected]>

make workflow-dir available as st.session_state for Files

3643a7f35f61a9425f81fef8c1574cc30b485de7 authored 8 months ago by axelwalter <[email protected]>

improve commment on process ids

af54b2f3efae2475613378b848d13a1a7429791c authored 8 months ago by axelwalter <[email protected]>

reducing dendency on session_state

- workflow-dir is determined once from workspace session_state in WorkflowManager and passed on
-...

9fd5bfcd2de4c9311ed37a832efb0df7cea95fb5 authored 8 months ago by axelwalter <[email protected]>

Files collect method replaces combine and flatten

d39f52e6d35ca6574ebc24f9013705d5ee5c6c4a authored 8 months ago by axelwalter <[email protected]>

custom Python tools functionality

8da3398271c9eeba57a684f326ec86ad3c9a7d1b authored 8 months ago by axelwalter <[email protected]>

fix invalid file name

a50afb2c51de588173cea4abed7b44c9eb787ebb authored 8 months ago by axelwalter <[email protected]>

remove files from params on deletion

813cd3594751a6b20209e9a237f38304c31309c7 authored 8 months ago by axelwalter <[email protected]>

add tutorial page

387b308aeb22759f2dd762ad06f706aecea98da6 authored 8 months ago by axelwalter <[email protected]>

minimal workflow example

9a7ba9b575fcaa7f63c569a8587b920363d2757a authored 8 months ago by axelwalter <[email protected]>

update docstrings

309727cec3f21dc4c0963934ffb66d693a13fde9 authored 9 months ago by axelwalter <[email protected]>

default files and error catch

787e667e07df4112193a6c27479a68f7cd7740df authored 9 months ago by axelwalter <[email protected]>

file upload

ee1f0a8025ee3fc1b258bcb73b90fd724f473575 authored 9 months ago by axelwalter <[email protected]>

workflow with sirius

70fa27b426bfb2f18e6e38b27bc80c21202d66b9 authored 9 months ago by axelwalter <[email protected]>

split workflow in separate modules

116cd6bb66ebc5e26b9448eed1de22ccdcf94757 authored 9 months ago by axelwalter <[email protected]>

finish parameter section

2937bbdb96ab14f10478d557ffd57edf98b387ab authored 9 months ago by axelwalter <[email protected]>

workflows with parallel processes and continous log

6b30c126018085ea184addf66e04c53c975a95c8 authored 9 months ago by axelwalter <[email protected]>

Merge pull request #39 from axelwalter/main

Add CI

3ffba89e5048b25fae5efa649caee85ea3750abe authored 12 months ago by axelwalter <[email protected]>

and install pytest

6e65ed60c17dd8bef11f401b94b1359341b83a19 authored 12 months ago by axelwalter <[email protected]>

install all dependencies for unit tests

a6436da2eab27b78bf2b4481653ad9768372445d authored 12 months ago by axelwalter <[email protected]>

pycache content to .gitignore

3424f43125008adaa92ae0a558bb8431fcfd9e2a authored 12 months ago by axelwalter <[email protected]>

add unit testing

fa056bf0c93ee9e73df13483a86ae0e6cc99043b authored 12 months ago by axelwalter <[email protected]>

don't run docker containers in github action

cd1ad6779ab5d8068f2ab4eade4d38033faab01e authored 12 months ago by axelwalter <[email protected]>

fix typo in docker build action

09b72a46e5f4610bbbd8e069119c5acd5e4d1904 authored 12 months ago by axelwalter <[email protected]>

actions to build docker images for testing

f35d93adf34f33142b29e5474f2ee5c83ce63753 authored 12 months ago by axelwalter <[email protected]>

build windows executable only on main branch

83ca30789d7527a0f9408d27c7bd471b6f7248e4 authored 12 months ago by axelwalter <[email protected]>

pylint on PR to main branch

2fc2ad4683196b9ea217cfbdcf93bafb3297bf5c authored 12 months ago by axelwalter <[email protected]>

python version formatting in pylint action

97ad18533f0d4805d19f28855967a1a712894628 authored 12 months ago by axelwalter <[email protected]>

pylint with Python 3.10 only

f1d3c57c5a857667935202cc2f2bd6bfb26f7376 authored 12 months ago by axelwalter <[email protected]>

specify dependencies

c6e945c1c0eda4a1553f6085fb060d6e7bfaef86 authored 12 months ago by axelwalter <[email protected]>

format code

0e7d599c368866bff9e9aa4c61438d917f605331 authored 12 months ago by axelwalter <[email protected]>

format code

552e01e6a02d4eeb9cf97fe5d0786551ccf288ac authored 12 months ago by axelwalter <[email protected]>

Create pylint.yml

d3e80c75fa735c73e0b93b29ea71d65e155ac4b6 authored 12 months ago by axelwalter <[email protected]>

Merge pull request #36 from axelwalter/main

Add note to captcha to disable ad blocker

f8b3cfa5113217add9bdc760b0cd9bf628375cce authored about 1 year ago by axelwalter <[email protected]>

add note to captcha to disable ad blocker

fcb7436161ec64a6e0917b025103e6cd6c1aa170 authored about 1 year ago by axelwalter <[email protected]>

Merge pull request #35 from axelwalter/main

Update readme

1c9d7c07a2b6d6eeeae518e749874026d8af329e authored about 1 year ago by axelwalter <[email protected]>

Update README

722b802553313b35caedc37d484d547c48b76c1e authored about 1 year ago by axelwalter <[email protected]>

put captcha in form

3ff13ec0a556339e168c37b04b7b6dbbfdbd5d63 authored about 1 year ago by axelwalter <[email protected]>

highlight download for windows button

f97359e02b00fe6dbb50836886b6aec42d29cc95 authored about 1 year ago by axelwalter <[email protected]>

Merge pull request #33 from Arslan-Siraj/main

remove globally remove and restore pages

922e88f18491579ba518defe5efeb952761d7fdb authored about 1 year ago by axelwalter <[email protected]>

remove globally remove and restore pages

73dd0ade90bf26a5af9a785e34cd40fa0c1a3704 authored about 1 year ago by Arslan <[email protected]>

Merge pull request #32 from axelwalter/main

Add cron job to clean-up workspaces

8ff57a818e38d232239b337b518b8197642ec506 authored about 1 year ago by axelwalter <[email protected]>

Merge branch 'main' into main

1e700b2d2948cc3eaa03c48e0587f10fc216aa1e authored about 1 year ago by axelwalter <[email protected]>

fix workspace path in clean-up script

81c8eba36fdf12e44b800f2c5305372bed5cf0c4 authored about 1 year ago by axelwalter <[email protected]>

run cron job once per day

5543c2684ac2a1eafe51a4c1161fef1632aac0e1 authored about 1 year ago by axelwalter <[email protected]>

add cronjob to clean-up workspaces

f462b6b0ac8c8199bb2a0833f295749bbfd94bea authored about 1 year ago by axelwalter <[email protected]>

Merge pull request #28 from Arslan-Siraj/streamlit_help

add subprocess example and some helper functions

c653febcfa92ff9db7aca34dc735c68a6bcc10db authored about 1 year ago by axelwalter <[email protected]>

run subprocess as seperate page

b0dcb585786bfb324fdbd3db46d001d15ddf3713 authored about 1 year ago by Arslan <[email protected]>

add pages as order in pages folder

38f94a5c129e8dba6d392ac02440eecfb07e54c2 authored about 1 year ago by Arslan <[email protected]>

resolve conflict

f684ef3261a2ef4174bf660ea00e37da1fe884e4 authored about 1 year ago by Arslan <[email protected]>

Merge pull request #31 from axelwalter/main

Remove mzML files from parameter items after deletion

c461bdd20574c3cca73a3230be120e1842f2a893 authored about 1 year ago by axelwalter <[email protected]>

Merge branch 'OpenMS:main' into main

99139f2aa121506b0c18b736d8600a9ea9fea58b authored about 1 year ago by axelwalter <[email protected]>

remove mzML files from parameter items after deletion

564fcd12383889c7b879b4b9d8c9583d033157a0 authored about 1 year ago by axelwalter <[email protected]>

Merge pull request #30 from axelwalter/main

Complex workflow with mzML files

bb692710cef9cc153a5844e89a58bad6e749266b authored about 1 year ago by axelwalter <[email protected]>

add new pages to captcha control

0c739dedd1986cf1aee4fca2be25bfa024cd1166 authored about 1 year ago by axelwalter <[email protected]>

define mzML directory in remove functions

4449ccaf237eee0fea922f1ed6e1e8d00a1efaf5 authored about 1 year ago by axelwalter <[email protected]>

complex workflow with mzML files

720cc4b33a4d5750b77bacf7b5b97d90bb8d7c7e authored about 1 year ago by axelwalter <[email protected]>

fixed captcha in local mode

70c9d3b36693258a6872ec64dd10a1ace29c3124 authored about 1 year ago by Arslan <[email protected]>

change the function input description

69c6bb649ade09a02e4bb76dd5ba65963cc5c00a authored about 1 year ago by Arslan Siraj <[email protected]>

added review

477652ba79977310cd7a6d3af49f5ec1623413e5 authored about 1 year ago by Arslan <[email protected]>

fix local

e1d0cec2e305e0300c08e7f4840428beecd00387 authored about 1 year ago by Arslan <[email protected]>

add subprocess/ fix captcha / annotate code

46d14b3baa8dff43ad5d5d9c7940f7ee28309f41 authored about 1 year ago by Arslan <[email protected]>

Merge pull request #24 from Arslan-Siraj/app_exe

fixed local

1d345ccbca7e607e2f49994fde533f24f5cb6358 authored about 1 year ago by axelwalter <[email protected]>

fixed local

d6e0c85ffaef2e83dcfb6c2ad9abdaa6de9012c6 authored about 1 year ago by Arslan <[email protected]>

Merge pull request #23 from Arslan-Siraj/app_exe

App exe

24162c802357fba21a66f06f8595a4b940fd1ea9 authored about 1 year ago by axelwalter <[email protected]>

Merge pull request #22 from axelwalter/main

Include OpenMS shared libraries

e5e80a5dc633112087d1954e2f78ade93cd973b7 authored about 1 year ago by axelwalter <[email protected]>

hooks/example-data added

fa6b8c5de40ef284cf75441de62183295594af31 authored about 1 year ago by Arslan <[email protected]>

captcha functionality added

c2e80c7f1a6e7006864d675067f7efbd5492022e authored about 1 year ago by Arslan <[email protected]>

new hook information

0589bfbf88feb42423b255d1ec520526a7434e49 authored about 1 year ago by Arslan Siraj <[email protected]>

include OpenMS shared libraries

7ff0064cdabe24093d37867a2e7f3286ba25d0af authored about 1 year ago by axelwalter <[email protected]>

Merge pull request #21 from axelwalter/download-executable-in-docker

Downloadable Windows executable

6e9b10b56b692f5d6260ffb5b113e1cf0a419507 authored about 1 year ago by axelwalter <[email protected]>

add download option for windows app to start page

4ed8dd8c2210b84900a8ebe669f4357f5c8fbacb authored about 1 year ago by axelwalter <[email protected]>

download windows executable into docker container

06b2e852523949020c6e963ea5c28843eb59daef authored about 1 year ago by axelwalter <[email protected]>

Merge pull request #20 from axelwalter/update-dockerfile

Update Dockerfile

4a4e6ea2e108b1565d8f0ad64e73525cf9ea699e authored about 1 year ago by axelwalter <[email protected]>

copy share and bin and delete source and build folders

0d9fd316424d290239d1d9f49082e058b7d1d204 authored about 1 year ago by axelwalter <[email protected]>

run page_setup on main page too

412843a537d26e289f64855185489b65b2a762f6 authored about 1 year ago by axelwalter <[email protected]>

use mamba in dockerfile_simple

7926e89273b117b64dec9edcda70a81e90337b28 authored about 1 year ago by axelwalter <[email protected]>

Merge pull request #19 from axelwalter/remove-unused-artifacts

Remove unused OpenMS bin and share artifacts

6ac64ef48e2cb33ea7018167986ec37b37156475 authored about 1 year ago by axelwalter <[email protected]>

revert back to using mamba

966b04569dbb29039504a8cd092ae32ea94b5a8d authored about 1 year ago by axelwalter <[email protected]>

update Dockerfile

- pyopenms now installed in streamlit-env

ef8ff5846ec4a1cc82c94c57956d991a3cce6385 authored about 1 year ago by axelwalter <[email protected]>

fix syntax

1db43a0ac0240148d424857d8d8ed0e4b6604f8d authored about 1 year ago by axelwalter <[email protected]>

remove unused OpenMS bin and share artifacts

4c1d3db5654a9f92a73e2a283e6c186e39f98814 authored about 1 year ago by axelwalter <[email protected]>

Merge pull request #18 from Arslan-Siraj/app_exe

App exe

66524735ef1932fb7ff8bce069e203b20252c7b5 authored about 1 year ago by axelwalter <[email protected]>

Update build-windows-executable-app.yaml

90f1b51ad575ab5687ec18fd4ae0637289f5d15a authored about 1 year ago by Arslan Siraj <[email protected]>

Merge branch 'main' into app_exe

5b830e23569822da8fcb50854a11f52821e1cf68 authored about 1 year ago by Arslan Siraj <[email protected]>

filder to dist

980c82c17295df1b3550069a8ec45de5503d128f authored about 1 year ago by Arslan <[email protected]>

Merge pull request #16 from Arslan-Siraj/app_exe

App exe

cd9a81e2cfbd4faadde82ee9d5d92b41a02c25cc authored about 1 year ago by axelwalter <[email protected]>

add main file to dist/

0d0fccb2982593ada225bd917085d965bd12c855 authored about 1 year ago by Arslan Siraj <[email protected]>

Update build-windows-executable-app.yaml

46a3f49ef1f2eeca1746d5973ad3a131a39f8afc authored about 1 year ago by Arslan Siraj <[email protected]>

modify env path

e6286353c231fc1adb8be6a0569428ce888b9616 authored about 1 year ago by Arslan <[email protected]>

test and build with OpenMS

eac3d4be9e9cd1f4288769072a3eb4c9fead08f6 authored about 1 year ago by Arslan <[email protected]>

streamlit test added

9df2fe17107c54d985448f522fe8f55926a0802f authored about 1 year ago by Arslan <[email protected]>

Merge pull request #15 from axelwalter/github-action-for-exe

Add action to build windows executable

23e97c47d849e7db328a6bce41ec7a43ab6eccc6 authored about 1 year ago by axelwalter <[email protected]>

add action to build windows executable

17572df5e6d4e7f889127edc5099e295eff3154b authored about 1 year ago by axelwalter <[email protected]>

Merge pull request #10 from Arslan-Siraj/exe-check

Exe check

6f3a2e98f1cc5e74d8a133f2afd8e536ca4725b7 authored about 1 year ago by axelwalter <[email protected]>