github.com/OpenMS/pyopenms-docs issues | Ecosyste.ms: OpenCollective

Move to conda

jpfeuffer opened this pull request almost 2 years ago

Try updating to sphinx 5 or even 6 beta

jpfeuffer opened this issue almost 2 years ago

Lots of warnings and errors in sphinx autodoc

jpfeuffer opened this issue almost 2 years ago

Escape underscores and other special sphinx characters

jpfeuffer opened this issue almost 2 years ago

Find a way to automatically display supported python versions

jpfeuffer opened this issue about 2 years ago

Update wrap_classes.rst with newest changes in autowrap

jpfeuffer opened this issue about 2 years ago

500+ warnings and a few errors on RTD and local

tapaswenipathak opened this issue about 2 years ago

Add tutorial how to generate modified sequences using ModifiedPeptideGenerator

timosachsenberg opened this issue over 2 years ago

Add how to get all modifications from ModificationsDB

timosachsenberg opened this issue over 2 years ago

Add furo theme

greengypsy opened this pull request over 2 years ago

Update pyopenms.readthedocs.io theme to furo

tapaswenipathak opened this issue over 2 years ago

Add tutorial how to load and plot Chromeleon file in pyOpenMS

timosachsenberg opened this issue over 2 years ago

Pandas export tutorial has warnings

jpfeuffer opened this issue over 2 years ago

Explicitly import pyOpenMS

Kastakin opened this issue over 2 years ago

Detect common binder errors automatically

timosachsenberg opened this issue over 2 years ago

Document how direct infusion data is handled inFeatureFindingMetabo

bpben opened this issue over 2 years ago

Doc/spectramerger

JangJang3 opened this pull request over 2 years ago

Add autosummary for classes

jpfeuffer opened this pull request over 2 years ago

[FEATURE] Add module/class documentation

jpfeuffer opened this pull request over 2 years ago

Link fixin

poshul opened this pull request almost 3 years ago

none of the get_df() functions are working

chrispook opened this issue almost 3 years ago

Extend Tutorial on other FeatureFinders

timosachsenberg opened this issue almost 3 years ago

Add extended text on isotope distributios

timosachsenberg opened this issue almost 3 years ago

Add IDFilter example

timosachsenberg opened this issue almost 3 years ago

Wrap push_back as append

timosachsenberg opened this issue almost 3 years ago

Add example how to filter ConsensusMap and move more C++ code from FileFiltering to library (and expose to python)

timosachsenberg opened this issue almost 3 years ago

Add example for baseline filtering

timosachsenberg opened this issue almost 3 years ago

"Import pyopenms" section hierarchy incorrect

jpfeuffer opened this issue almost 3 years ago

[GH Actions] PR tests: only convert and test changed RSTs

jpfeuffer opened this issue almost 3 years ago

[WIP] Add repo2docker action

rahul799 opened this pull request almost 3 years ago

Pushes with GitHub tokens do not trigger workflows

jpfeuffer opened this issue almost 3 years ago

Decrease the binder launch time using Docker

rahul799 opened this issue almost 3 years ago

Edit and add badges for Build, test and sphinx/RTD

jpfeuffer opened this pull request about 3 years ago

Add branch generation to release job in OpenMS repo

jpfeuffer opened this issue about 3 years ago

Add tutorial on spectrum merging (SpectraMerger algorithms)

timosachsenberg opened this issue about 3 years ago

Double-check case sensitivity of anchor links

jpfeuffer opened this issue about 3 years ago

convert more of the existing pyOpenMS tools that use argparse to use CTDopts

timosachsenberg opened this issue about 3 years ago

Add link to jupyter notebook as well (e.g., next to binder button)

timosachsenberg opened this issue about 3 years ago

Publicly available workflows or building blocks?

sorenwacker opened this issue about 3 years ago

iPyNB conversion for code in Notes not working

jpfeuffer opened this issue about 3 years ago

rename folder

jpfeuffer opened this pull request about 3 years ago

Added pandoc filters for a conversion with plain pandoc

jpfeuffer opened this pull request about 3 years ago

algo parameter documentation

timosachsenberg opened this issue about 3 years ago

Spectrum alignment menu

timosachsenberg opened this issue about 3 years ago

IsotopeDistribution should provide __dict__ conversion

timosachsenberg opened this issue about 3 years ago

link to pxd files so users can easier look up all wrapped methods

timosachsenberg opened this issue about 3 years ago

Fix peptide search. Use larger data. Add inference.

jpfeuffer opened this pull request about 3 years ago

Code that should be wrapped in PyOpenMS

oliveralka opened this issue about 3 years ago

Formulate learning goals at top of each topic.

timosachsenberg opened this issue over 3 years ago

Add basic protein inference example

timosachsenberg opened this issue over 3 years ago

change interface of SpectrumBrowser widget

timosachsenberg opened this issue almost 5 years ago

embed python console in GUI app: potentially interesting widget for power users

timosachsenberg opened this issue almost 5 years ago