github.com/OpenMS/pyopenms-docs issues | Ecosyste.ms: OpenCollective

Adding plt.show()

r-sayar opened this pull request 15 days ago

Error when loading pyOpenMS libraries!

LCLazari opened this issue 16 days ago

How to extract isotope EIC when using FeatureFinder () ?

grimace9527 opened this issue 24 days ago

make copyright year dynamic

jcharkow opened this pull request about 1 month ago

Tutorial enhancements

cbielow opened this pull request about 2 months ago

add code snipped on how to filter by native id

timosachsenberg opened this issue 3 months ago

Prepare for OpenMS 3.2.0 release

mr-c opened this pull request 4 months ago

Question

chulexuexibiedebushihewo opened this issue 4 months ago

Extract specific information from feature_map and matched to ConsensusMap

chulexuexibiedebushihewo opened this issue 4 months ago

Get wrong MassTraceDetection results

xieyying opened this issue 4 months ago

add Tutorial on saving a subset of data (zoomed in 2D area)

timosachsenberg opened this issue 4 months ago

correction charge in mzML file

neel-lab opened this issue 5 months ago

Remove twitter icon

timosachsenberg opened this pull request 5 months ago

Update peptides_proteins.rst

Ayesha-Feroz opened this pull request 8 months ago

Update peptides_proteins.rst

Ayesha-Feroz opened this pull request 8 months ago

Update OpenMS.svg

poshul opened this pull request 8 months ago

openMS input files

saassli21 opened this issue 9 months ago

Bump readthedocs-sphinx-search from 0.3.1 to 0.3.2 in /docs

dependabot[bot] opened this pull request 9 months ago

Bump tj-actions/changed-files from 35 to 41 in /.github/workflows

dependabot[bot] opened this pull request 10 months ago

Update plotting tutorials

matteopilz opened this pull request 10 months ago

Spectramerger sprint

KyowonJeong opened this pull request 10 months ago

removed reference to isotopewavelet

timosachsenberg opened this pull request 10 months ago

Update spectrum_normalization.rst

Ayesha-Feroz opened this pull request 11 months ago

Asking for some questions

chulexuexibiedebushihewo opened this issue 11 months ago

An AttributeError: 'pyopenms.pyopenms_1.ConsensusMap' object has no attribute 'get_df'

chulexuexibiedebushihewo opened this issue 11 months ago

Revisit and Add spectrum merger tutorial

timosachsenberg opened this issue 11 months ago

Add spectrum filtering menu item

timosachsenberg opened this issue 11 months ago

Adduct detection tutorial

axelwalter opened this pull request 11 months ago

Expand spectrum normalization tutorial

timosachsenberg opened this issue 12 months ago

Update charge_isotope_deconvolution.rst

poshul opened this pull request 12 months ago

Add some tutorial on basic OpenSWATH chromatogram algorithms

timosachsenberg opened this issue 12 months ago

choose binder instance able to run our notebooks

timosachsenberg opened this pull request 12 months ago

DONT MERGE Master+ipynb

poshul opened this pull request 12 months ago

Update test-pr.yaml to use conda

poshul opened this pull request 12 months ago

Use stable pyopenms

poshul opened this pull request 12 months ago

Change in Isotope Pattern Generator

dlon450 opened this issue about 1 year ago

Update ms_data.rst

poshul opened this pull request about 1 year ago

Test notebooks action does not trigger correctly!!

jpfeuffer opened this issue about 1 year ago

automatically add dev tag based on branch (RTD-only)

jpfeuffer opened this pull request about 1 year ago

add page on logging

jpfeuffer opened this pull request about 1 year ago

Update supported versions of python

radusuciu opened this pull request about 1 year ago

Find a way to automatically update versions at release

jpfeuffer opened this issue about 1 year ago

Documentation about Ionic mobility

PierreSnell opened this issue over 1 year ago

add new-binderIntegration.gif

Arslan-Siraj opened this pull request over 1 year ago

Update installation.rst

Arslan-Siraj opened this pull request over 1 year ago

Update installation.rst for pyopenms

KyowonJeong opened this pull request over 1 year ago

small change to py domain pandoc filter

jpfeuffer opened this pull request over 1 year ago

Convert References to html Links for ipynb

matteopilz opened this pull request over 1 year ago

Update peptides_proteins.rst

Ayesha-Feroz opened this pull request over 1 year ago

Fix MS consumer Code blocks

jpfeuffer opened this issue over 1 year ago

Explicitly import pyOpenMS in the example python codes

JeeH-K opened this pull request over 1 year ago

Wheel/Packages server is returning 503.

PierreSnell opened this issue over 1 year ago

Update scoring_spectra_hyperscore.rst

timosachsenberg opened this pull request over 1 year ago

create pyopenms logo

timosachsenberg opened this issue over 1 year ago

Revert "Update peptides_proteins.rst"

jpfeuffer opened this pull request over 1 year ago

Update peptides_proteins.rst

Ayesha-Feroz opened this pull request over 1 year ago

Update peptides_proteins.rst

timosachsenberg opened this pull request over 1 year ago

Update documentation issue or request template

matteopilz opened this pull request over 1 year ago

Translate dataframes functions to cython

jpfeuffer opened this issue over 1 year ago

Create Vector wrapper for PeptideIdentifications and ProteinIdentifications

jpfeuffer opened this issue over 1 year ago

Update postBuild to use or new nightly pyopenms name scheme

timosachsenberg opened this pull request over 1 year ago

modify icon bar

jpfeuffer opened this pull request over 1 year ago

text for userguide subpage and uncollapse toc

jpfeuffer opened this pull request over 1 year ago

interactive_plots.rst binder doesn't work because it runs out of memory

timosachsenberg opened this issue over 1 year ago

Pydata theme notemplates

jpfeuffer opened this pull request over 1 year ago

Try pandoc 3.x for generating ipynbs

jpfeuffer opened this pull request over 1 year ago

Fix some code blocks

jpfeuffer opened this pull request over 1 year ago

Update requirements.txt

jpfeuffer opened this pull request over 1 year ago

Update export to pandas dataframes file - solves warnings during notebook generation

axelwalter opened this pull request over 1 year ago

Memory errors when exporting GNPS files

wkindschuh opened this issue over 1 year ago

Update wrapping_workflows_new_classes.rst

Ayesha-Feroz opened this pull request over 1 year ago

Verbosity level

PierreSnell opened this issue over 1 year ago

Feature: Get variance from different experiements.

PierreSnell opened this issue over 1 year ago

Potential useful information to review and add to the readthedocs page - from learning unit 11

timosachsenberg opened this issue over 1 year ago

Potential useful information to review and add to the readthedocs page - from learning unit 10

timosachsenberg opened this issue over 1 year ago

Potential useful information to review and add to the readthedocs page - from learning unit 9

timosachsenberg opened this issue over 1 year ago

Potential useful information to review and add to the readthedocs page - from learning unit 7

timosachsenberg opened this issue over 1 year ago

Potential useful information to review and add to the readthedocs page - from learning unit 6

timosachsenberg opened this issue over 1 year ago

Potential useful information to review and add to the readthedocs page - from learning unit 5

timosachsenberg opened this issue over 1 year ago

Potential useful information to review and add to the readthedocs page - from learning unit 4

timosachsenberg opened this issue over 1 year ago

Potential useful information to review and add to the readthedocs page - from learning unit 3

timosachsenberg opened this issue over 1 year ago

Potential useful information to review and add to the readthedocs page - from learning unit 2

timosachsenberg opened this issue over 1 year ago

Add information on hyperscore from one of our past lectures

timosachsenberg opened this issue over 1 year ago

Opening an issue should also give possibility to do a feature request / ask for additional documentation.

timosachsenberg opened this issue over 1 year ago

Name issue nightly pypi

jpfeuffer opened this issue over 1 year ago

formula notation not correct

timosachsenberg opened this issue over 1 year ago

:py:class: references look weird in ipynb notebooks

jpfeuffer opened this issue over 1 year ago

Create new logo

jpfeuffer opened this issue over 1 year ago

[FEATURE] First try with pydata theme

jpfeuffer opened this pull request over 1 year ago

Generate ipynb on-the-fly with postBuild

jpfeuffer opened this issue over 1 year ago

re-added requirements processing

poshul opened this pull request over 1 year ago

have versioned docs. I.e. a nice visible drop-down on the web interface such that people can switch from nightly to release

poshul opened this issue over 1 year ago

Confusion due to missing/invisible versioned docs

jpfeuffer opened this issue over 1 year ago

Add furo theme to pyopenms.readthedocs.io

tapaswenipathak opened this pull request over 1 year ago

test blacken

jpfeuffer opened this pull request over 1 year ago

test blacken

jpfeuffer opened this pull request over 1 year ago

Duplicate introduction!

jpfeuffer opened this issue over 1 year ago

[FIX] blacken and dozens of other warnings. Also parellelize build.

jpfeuffer opened this pull request over 1 year ago

Overwritten/aliased classes not documented correctly

jpfeuffer opened this issue over 1 year ago

Update apidoc.rst

poshul opened this pull request almost 2 years ago