github.com/OpenMS/pyopenms-docs commits | Ecosyste.ms: OpenCollective

Merge remote-tracking branch 'upstream/feature/App' into feature/App

063bcaf62b10d45d39a83c263a7585be0af471e3 authored almost 5 years ago by Jang Jang Jin <[email protected]>

all pyc files removed

a9b0ab0f3d6a053d8b6bbf6148c5512cf02e2131 authored almost 5 years ago by Jang Jang Jin <[email protected]>

renamed viewer app

e931cb4cb4ad8c53c5430e8c17d9aee585ffc8e6 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

minor tweaks from thesis meeting

eeb1ff000d98dee43712b97ee7bdcbceaab58b79 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

fixing, adding signal connections bw Widgets

38ea06e620f86ece9f676f780c574b9e521add4c authored almost 5 years ago by Jang Jang Jin <[email protected]>

Merge remote-tracking branch 'origin/master' into feature/App

72fa03c0553ccf2ef6e40e3aba91eb4c5e36053a authored almost 5 years ago by Jang Jang Jin <[email protected]>

Merge remote-tracking branch 'upstream/jmaster'

9d08a25fc7575c19cb98379c6c61101e72c9113d authored almost 5 years ago by Jang Jang Jin <[email protected]>

example code for reading id data

243697ae1f66305f2622721d064d84da9f1206e1 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

minor rearrangement

c00fac9b92092144c05990be4ded8b8095748219 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

Merge remote-tracking branch 'upstream/master'

c5b910ec0ab83540b65187c179a322f94eb73b14 authored almost 5 years ago by Jang Jang Jin <[email protected]>

fix files, add exceptions in TIC, add Prototype TestAppViewer

a8d15c28889c71df6a28df2f66ede11deefc6009 authored almost 5 years ago by Jang Jang Jin <[email protected]>

MS2 spectra and IDs

7307aaf7f7280b2827f594c18956b92db0e3208f authored almost 5 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #35 from JangJang3/feature/Errorplot

Feature/errorplot

f89f1a2cb87c084d16e714ec715585b967dbeccb authored almost 5 years ago by JangJang3 <[email protected]>

add new blank line in the end

1c9791f91c5d813118272261e25f9fb65b6fd9d0 authored almost 5 years ago by JangJang3 <[email protected]>

change equal expression into expr is

6760243530cc374468f84c8d9a79019699f63391 authored almost 5 years ago by JangJang3 <[email protected]>

delete blank lines

5e30ba88bc750e453abe1d124e2044b2cccf1925 authored almost 5 years ago by JangJang3 <[email protected]>

fix double signal

83fc9a435946b3c8be1e6ca0b4ab6ac4aa36dae5 authored almost 5 years ago by Jang Jang Jin <[email protected]>

delete unnecessary line

634d1ddecfcdfea593a0d54ede71761ca0355053 authored almost 5 years ago by Jang Jang Jin <[email protected]>

adjust region borders to the peaks of interest

3bb094f873ff5b227f6dc5545367f1607d9c6a3a authored almost 5 years ago by Jang Jang Jin <[email protected]>

change signal name

4e82d51a1bfdc8545f0b91912db2c4c07b5ad750 authored almost 5 years ago by Jang Jang Jin <[email protected]>

add signal selected rt region bounds

85714e1edaf24972b4e43646e2dc4d9d46fe9def authored almost 5 years ago by Jang Jang Jin <[email protected]>

Merge remote-tracking branch 'upstream/feature/Errorplot' into feature/Errorplot

fe8804284c58a9d1c1156cba4ea84809ce808aef authored almost 5 years ago by Jang Jang Jin <[email protected]>

emit signal if TIC clicked

59a58c88f665b8d84bc5611d661efd220cc638f4 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

adding 2nd shortcut, drag replacement idea

4781f8e92fc942c65b84a60e01cb3711fcf89255 authored almost 5 years ago by Jang Jang Jin <[email protected]>

Merge pull request #1 from OpenMS/feature/Errorplot

fixed label of y axis

a9f3379a75fc17507ead0adebfdc2460b486f732 authored almost 5 years ago by JangJang3 <[email protected]>

adding region field via shortcuts or doubleClk

2844f3ceb6a489a5bd8556dfc6d7157b851c5a14 authored almost 5 years ago by Jang Jang Jin <[email protected]>

fixed label of y axis

57b7b792f33571ec601694a2116954a43e66936a authored almost 5 years ago by Timo Sachsenberg <[email protected]>

Merge branch 'feature/Errorplot' of https://github.com/JangJang3/pyopenms-extra into feature/Errorplot

8cefec718dd72e37738d299ae2df170b1912cf7b authored almost 5 years ago by Jang Jang Jin <[email protected]>

TIC mouseClick prototype

30165b3f1d8d811d4eae15f06db74466a99c4b66 authored almost 5 years ago by Jang Jang Jin <[email protected]>

TIC mouseClick prototye

dd6f64db3b0cfc89246a7afb2226bef84ca15e95 authored almost 5 years ago by Jang Jang Jin <[email protected]>

clean up

3dd70c99937b23c7d932ea5309e33aa8ddde1ff1 authored almost 5 years ago by Jang Jang Jin <[email protected]>

RT unit in min, relative intensity

016fb28d2dbb374b82d0f0e55961b3eca5a7b9e0 authored almost 5 years ago by Jang Jang Jin <[email protected]>

fixing autoscale

dd86e7c5b1c775705f86158b77b9b4583403ae86 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

testing

ff40d5339c3992e61daffebc2e4b88af3e852221 authored almost 5 years ago by Jang Jang Jin <[email protected]>

fix rapid zooming error

615bd488063ebfb53ed46735e1283a1e916b9998 authored almost 5 years ago by Jang Jang Jin <[email protected]>

fix clash function, check first label clashes then distance clashes

53ef543bc0308c2931b60789e5019f55b0f25bf2 authored almost 5 years ago by Jang Jang Jin <[email protected]>

fix clash function and change clearing of labels

06226e870f64144890e04e38bb79b8be99b20b08 authored almost 5 years ago by Jang Jang Jin <[email protected]>

minor changes to ErrorWidget, bounding box calculation in TICWidget

8a6ce554a14f6e895e1dd4779b20a5f19811f72c authored almost 5 years ago by Timo Sachsenberg <[email protected]>

new idea, quicker relabeling peaks in TIC

eb4ca60c0437325cd7d11e3fdcf3fa14da5d4eba authored almost 5 years ago by Jang Jang Jin <[email protected]>

add horizontal line + color list

0c3993fb7f1480b34ebdd17fd6447092226a4065 authored almost 5 years ago by Jang Jang Jin <[email protected]>

add new feature TIC plot, needsimprovement

bd6e11aa5886a62832d6d8a046faf8161ad2e4d3 authored almost 5 years ago by Jang Jang Jin <[email protected]>

Delete GUI_Errorplot.py

03a921e81eefe55901ee140b1a0b54b939b0b962 authored almost 5 years ago by JangJang3 <[email protected]>

add new feature ErrorWidget

b92e25705b3de3c47dc0a6e6a77b60df0e2d2397 authored almost 5 years ago by Jang Jang Jin <[email protected]>

Merge pull request #33 from OpenMS/feature/doc_id

[DOC] extend peptide/protein id docu

8f46b0ee81339d85a5fa3ebd8068319831782392 authored almost 5 years ago by Hannes Roest <[email protected]>

[DOC] extend peptide/protein id docu

78cfe4cd20c34bc67cb4d1d58a76e5f77224b097 authored almost 5 years ago by Hannes Roest <[email protected]>

Merge pull request #28 from OpenMS/feature/table_entries

add more columns to tablemodel

a1ca611f0dc5d3c479703fb7340de52f0b3c1a28 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

renamed example file

3b61eb0c98ddf85a1126923e7e653f03d93f24d7 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

Merge branch 'master' of https://github.com/OpenMS/pyopenms-extra

983acce9edbd3aa4ae89bfcdb4b0fefa456ad577 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

sample application for mass decomposition

67a0e768a98929863580aa73297a7a0a25bbdfb4 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #30 from OpenMS/feature/annotation_example

example spectrum annotation

5d28e7092e2b345c11c8ca73b97e365a22a011ef authored almost 5 years ago by Timo Sachsenberg <[email protected]>

example spectrum annotation

f02e0e49f3898bb5e6824ba124f9ee6ce56894ba authored almost 5 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #29 from JangJang3/feature/PepVisualization

Feature/pep visualization

d4e1ba19d00fc04a61612a02833681db0ce0a5b7 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

Update GUI_SequenceIonsWidget.py

e5f308c5f7014b6e31b06b0e3f21eefa523343af authored almost 5 years ago by Timo Sachsenberg <[email protected]>

Update SequenceIonsWidget.py

409062e04b64b66aa87c8680d654d242ce39620b authored almost 5 years ago by Timo Sachsenberg <[email protected]>

change to fit GUI_SequenceIonsWidget

8dfe54aca06f43513c01b52744e3714bdf7a5282 authored almost 5 years ago by Jang Jang Jin <[email protected]>

add GUI_SequenceIonsWidget

477509190abc501ca65125bf8285033b19c72336 authored almost 5 years ago by Jang Jang Jin <[email protected]>

add more columns to tablemodel

f486d67d2a19be205fb45ae906ef877820fb887c authored almost 5 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #27 from OpenMS/feature/SpecVisualization

Feature/spec visualization

2115c598030454fe0e911362fe7f462cf53e71c4 authored almost 5 years ago by JeeH-K <[email protected]>

Fixing issues from CodeFactor

a50379389a31924208ff767ab2af742780bdf812 authored almost 5 years ago by JeeK <[email protected]>

moved widget to view folder

1bc5a903f88256b2ef57b6d8d8cc75da079939ec authored almost 5 years ago by Jang Jang Jin <[email protected]>

Merge remote-tracking branch 'upstream/feature/SpecVisualization' into feature/PepVisualization

a71b3477a6f821307a76e6f4d26b48d1aef7ecd5 authored almost 5 years ago by Jang Jang Jin <[email protected]>

initial version of PepViewer

df279829ddbce9596035e61d2227ae35ed046933 authored almost 5 years ago by Jang Jang Jin <[email protected]>

delete frame and fix the window fitting

712ca1d84e3a9d35fafb94ffc5a239e1ff2224b3 authored almost 5 years ago by JangJang3 <[email protected]>

fit window size to the current pep seq

e3dfa7c856a51c8e9b9e5be5050e4f0ce25e194c authored almost 5 years ago by JangJang3 <[email protected]>

minor style fixes

2b58d39cfce92538b861b09b13e9e613b5449449 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #25 from OpenMS/feature/refactor_examples

Feature/refactor examples

1d82a5503e0b1e4a657610884cfd6a67432a52a0 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

Merge remote-tracking branch 'origin/feature/refactor_examples' into feature/refactor_examples

fb4565fc339dcaa59bbad57ef3d432dcb613b6d3 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

cleanup

7a7f57696a55c056386a3bc8f955f0fd9572ed3e authored almost 5 years ago by Timo Sachsenberg <[email protected]>

Update GUI_EXAMPLE_BASE.py

3bf9b1cbd53dedb0182483040d344f47d09a458d authored almost 5 years ago by Timo Sachsenberg <[email protected]>

more style fixes

61d7fdc17dc6f1c294bf468319a8ed133602a295 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

fixed style issues

468012dc96c1bfc8f11f335b4046f2760dd22678 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

factored scan browser widget into separate file

793db1b06142d9a5ab20b1e1ee12f55c21c1ec5f authored almost 5 years ago by Timo Sachsenberg <[email protected]>

created base class to declutter example apps

c5de4f42fe2f3d53b79c57738d10b9e0aac138bd authored almost 5 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #24 from OpenMS/feature/norescale

prevent rescaling of X Axis if label from peak highighting overlaps b…

754133a080d9d6d71460aeaf89ddb021c4acf11b authored almost 5 years ago by JeeH-K <[email protected]>

prevent rescaling of X Axis if label from peak highighting overlaps boundaries

e01ef6e572f384cae2d0478567708676ebd16dcc authored almost 5 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #23 from OpenMS/feature/refactore_sv

added path

19e27e251323482f0c26f4d4d1f022c7f2ca3e61 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

added path

4b47139164f179233632c12fe063fef21fd451a0 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #22 from OpenMS/feature/refactore_sv

Feature/refactore sv

b3b63d2b5446e6a7692ee5d97a2f6c9e8a973903 authored almost 5 years ago by JeeH-K <[email protected]>

revert

b0c27976cb6fb2e47a937dd2875f0a2d093eb426 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

revert

e5b1e75f4d669810626d93b0c31968a0813c43b7 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

[FEATURE] example for ScanTableWidget

8ce4f479a8771778df437f994a43c613313ed17a authored almost 5 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #21 from OpenMS/feature/refactore_sv

Feature/refactore sv

55c5359ab8f988260fd97a5040b4edf650749748 authored almost 5 years ago by JeeH-K <[email protected]>

[FEATURE] added example for spectrum view

2685f76dcc4730efe1a44296dc43d81d6182556c authored almost 5 years ago by Timo Sachsenberg <[email protected]>

[REFACTOR] moved TableWidget out os SpecViewer

58675fbf69ecbc739d30bcddd7a525185ec3c742 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

factored widget out of App

3b9039b594222530a48e594f7543bb5aafa13f99 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

SpectrumWidget: Revert to sigXRangeChanged from sigRangeChangedManually

21836878d2d2fcaa6b16ff0abcab8ba83a727a6e authored almost 5 years ago by JeeK <[email protected]>

Merge pull request #20 from OpenMS/feature/separatingFDV

Separating FLASHDeconvViewer from SpecViewer

b389ec00ac978ae6ff2ffc264c8078cc6cb7d995 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

Separating FLASHDeconvViewer from SpecViewer

1af05a7ccb67a44b7cdf3c30fd908f192b3e34d4 authored almost 5 years ago by JeeK <[email protected]>

Merge pull request #19 from OpenMS/feature/ms1mapviewer

[NOP] created apps folder for standalone pyOpenMS apps

32a2a2fe6d825778af79d7a0d4d537590b0aed32 authored almost 5 years ago by JeeH-K <[email protected]>

[NOP] created apps folder for standalone pyOpenMS apps

001e630b6a5ab68d5273a5d4bb01f832e86317cc authored almost 5 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #18 from OpenMS/feature/ms1mapviewer

[FEATURE] simple (and still slow) MS1 map viewer

9f860abde7ecf83db24f1bcc6e25e387b5b70b45 authored almost 5 years ago by JeeH-K <[email protected]>

[FEATURE] simple (and still slow) MS1 map viewer

596261fa820d1b8584463be22ba397e85d2574c7 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

FLASHDeconvV : Bug fix for working wihtout a mass file

609a1b23d7508163b5e906ba269a32b9c1ac674b authored almost 5 years ago by JeeK <[email protected]>

FLASHDeconvV : working without a mass file is now possible and added an FLASHDeconv result example file

e849f7ae11a90c5ceccffbc9894f68d0677657f4 authored almost 5 years ago by JeeK <[email protected]>

Refactoring

0d85fbff4072ec52f1df6e301ce14c6b59fb4da7 authored almost 5 years ago by JeeK <[email protected]>

revert

6dbdba67031665f7706135b675e5aff51a834f8b authored almost 5 years ago by Timo Sachsenberg <[email protected]>

Update pepViewer.py

f6df9d632aee16fe019f6f6defd859ad1445cd6c authored almost 5 years ago by JangJang3 <[email protected]>

moved widget to boxlayout

a62dbd3d57b7f93bb64c0f47286d3c02566004e7 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

delete print(..)

6d2472a70d3bb908d481b501d569bad94ce67d9e authored almost 5 years ago by JangJang3 <[email protected]>

add ions and fix suffix reading direction

e032125f6e78c8f42dba064f09bdb13f15b96e13 authored almost 5 years ago by JangJang3 <[email protected]>