github.com/OpenMS/pyopenms-docs commits | Ecosyste.ms: OpenCollective

RM pull

0528533d51b30bab8d1198cbe2c8c969988b9c70 authored over 3 years ago by Oliver Alka <[email protected]>

Use wrap-doc with space (#93)

* wrap-doc with space

Use # wrap-doc with space to be consistent, start the comment with a ca...

7eacecf95a5a64fbd97b071f79550fffbd77d0f7 authored over 3 years ago by Oliver Alka <[email protected]>

Feature/improve documentation (#94)

* add isotopic distribution visualization in docs

* fix

* add vis for ethanol and methanol...

15e89dddc21cc6fc8243dab23c1266276cb2c2ef authored over 3 years ago by JangJang3 <[email protected]>

Merge pull request #69 from OpenMS/oliveralka-patch-1

Add example for a StringList

6637fcfc079aa3e350f0e0566bfb905453c110bc authored over 3 years ago by Oliver Alka <[email protected]>

Merge pull request #91 from rahul799/master

fixing dependencies

27bd495eba70bba88661b16b0c0040b15f4dbb5f authored over 3 years ago by Julianus Pfeuffer <[email protected]>

fixing dependencies

75fb48567417aa65fe47675deba192189d22df7f authored over 3 years ago by rahul799 <[email protected]>

Update datastructures.rst

60123bc598416a1b396c969c38ae574e4fd0715c authored over 3 years ago by axelwalter <[email protected]>

Merge pull request #89 from OpenMS/feature/2DSpectraPlots

Feature/2d spectra plots

3a6df8f8dcf22c042c1a97b37e006881c82db8d2 authored over 3 years ago by axelwalter <[email protected]>

Update datastructures.rst

ca8b0ea73d97d60367890d9f270b93367757e0ea authored over 3 years ago by axelwalter <[email protected]>

add detailed and overview 2D plots for spectra

9ee582a12689a42a31e3e81ae62799880eccfa6b authored over 3 years ago by axelwalter <[email protected]>

Update README.md

46d53928880be31093f591b513d313ad88a75d68 authored over 3 years ago by Timo Sachsenberg <[email protected]>

Update README.md

addd57500e40e3a2e125e9702c3195292435ef96 authored over 3 years ago by Timo Sachsenberg <[email protected]>

Update requirements.txt

2480f6211621e6f540c965d91970d05119be6f29 authored over 3 years ago by Timo Sachsenberg <[email protected]>

Integrating Binder (#86)

* Update Makefile

* Create generate_ipynb.sh

* Create Build_Jupyter_Notebooks.yml

* Cre...

63342e671d590979a20581ee6cd93918fe9cf3b5 authored over 3 years ago by Rahul Agrawal <[email protected]>

Update datastructures.rst

e628a33bf0fb73c91f727dca6b6334a808c0778b authored over 3 years ago by axelwalter <[email protected]>

Merge pull request #87 from OpenMS/feature/plotChromatogram

add spectrum plot

6c40bf1e43f9f12e31b938d8f04eab1ae0fd52d0 authored over 3 years ago by axelwalter <[email protected]>

add spectrum plot

4e84a8812a17372b8780793986e312d0082069ca authored over 3 years ago by axelwalter <[email protected]>

Update getting_started.rst

9fa9ef227734f0fde2fe19aa2e205bbc2eb4e9b9 authored over 3 years ago by axelwalter <[email protected]>

Update getting_started.rst

3a3e9d403ea212e37861716d077e90308f941d97 authored over 3 years ago by axelwalter <[email protected]>

Merge pull request #85 from OpenMS/feature/plotChromatogram

plot chromatograms

8c6710ed3fbf2cfb3de99bdd9bc77584201bc5f9 authored over 3 years ago by axelwalter <[email protected]>

plot chromatograms

c3fb032369d3e3527f10ae9a1c9bc2dd6920e725 authored over 3 years ago by axelwalter <[email protected]>

Update getting_started.rst

b0a685325292f687d2931bbf8e497eb3c30a47b6 authored over 3 years ago by axelwalter <[email protected]>

Merge pull request #84 from OpenMS/feature/plotTIC

add 2D plot for TIC

ef17b8f7ed664fbb46db35f02e51dab3f7fe4273 authored over 3 years ago by axelwalter <[email protected]>

add 2D plot for TIC

430164861213f18196bd7b206f1b28c370d1273a authored over 3 years ago by axelwalter <[email protected]>

Update README.md

36ffdb943b9af260ac2e8e06eb6fdf710584ccea authored over 3 years ago by Timo Sachsenberg <[email protected]>

Update metabolomics_targeted_feature_extraction.rst

b7ca6b57820ba317741b599178538a8ee4e19c78 authored over 3 years ago by Timo Sachsenberg <[email protected]>

Update metabolomics_targeted_feature_extraction.rst

28623a99807aca86251956b0ad3a92d7cea118b4 authored over 3 years ago by axelwalter <[email protected]>

tsv table

63249bdd22689135c662fbabec5c9460d1ac41d4 authored over 3 years ago by Timo Sachsenberg <[email protected]>

add tsv file

f5d42947db9f2a974e40234db2a352a36b345594 authored over 3 years ago by Timo Sachsenberg <[email protected]>

add table in tutorial

70000c261a96c6365cc397ae67d62a45c905f4be authored over 3 years ago by Timo Sachsenberg <[email protected]>

renamed requirements for sphinx

8ddf2e5a21fe7c8f743d9ae0fafb855b95e0e55f authored over 3 years ago by Timo Sachsenberg <[email protected]>

attempt to add markdown table

fe3f996a250a5705af7ed9b7d21e8b81628ab2dc authored over 3 years ago by Timo Sachsenberg <[email protected]>

Create requirements.txt

2c40bf9fbc731f42fc584c355ff0542b4d8c78bf authored over 3 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #75 from OpenMS/feature/FeatureFinderMetaboIdent_tutorial

Feature/feature finder metabo ident tutorial

3da5513043c5bb34a5923437f9e76aeb08c59b2d authored over 3 years ago by axelwalter <[email protected]>

Merge branch 'feature/FeatureFinderMetaboIdent_tutorial' of https://github.com/OpenMS/pyopenms-extra into feature/FeatureFinderMetaboIdent_tutorial

8b85e785acff35f5f9dd0bdd1003e44c10a64c18 authored over 3 years ago by axelwalter <[email protected]>

code blocks not showing

5e4af49164b776d37a696f620ec959714afa122d authored over 3 years ago by axelwalter <[email protected]>

Merge pull request #74 from OpenMS/feature/FeatureFinderMetaboIdent_tutorial

Feature/feature finder metabo ident tutorial

9a36df8dd8ccbb5527ca7f201371baf727bc8a64 authored over 3 years ago by axelwalter <[email protected]>

Merge branch 'master' into feature/FeatureFinderMetaboIdent_tutorial

2c23f1fa9430720044c9486ef9083b35f3ebc53e authored over 3 years ago by axelwalter <[email protected]>

fix formatting

f64d68f48cd2b2a462cdbb8ac291c2cfa3db9d36 authored over 3 years ago by axelwalter <[email protected]>

add FeatureFinderMetaboIdent tutorial (#73)

* add FeatureFinderMetaboIdent tutorial

* Update feature_detection.rst

* address review co...

0c05ed6fa0a8e93bbfc56290c238c9dd017a2e41 authored over 3 years ago by axelwalter <[email protected]>

Merge branch 'feature/FeatureFinderMetaboIdent_tutorial' of https://github.com/OpenMS/pyopenms-extra into feature/FeatureFinderMetaboIdent_tutorial

23763bea39361ced4ab80e46a969a636232e93e9 authored over 3 years ago by axelwalter <[email protected]>

address review comments

22d40b0a1fb991e7a2fc3a3ec7a0497309c80a66 authored over 3 years ago by axelwalter <[email protected]>

Update feature_detection.rst

85b218d4913a5f1a8292866375e44fdf6579b711 authored over 3 years ago by Timo Sachsenberg <[email protected]>

add FeatureFinderMetaboIdent tutorial

62120f1953b0a317dc1a70beee6e6d4b1f2fd978 authored over 3 years ago by axelwalter <[email protected]>

Update build_from_source.rst

0db38ac53b0786974b32bdb2df923ecf3deb7da1 authored over 3 years ago by Timo Sachsenberg <[email protected]>

Update index.rst

869775d04b3511a949f8eacf8c64058e93e982ba authored over 3 years ago by Timo Sachsenberg <[email protected]>

update 2.6.0 (#68)

9f3d1c4942e216b03547742be1314bc6466150d5 authored over 3 years ago by Oliver Alka <[email protected]>

Add example for a StringList

6a8cfbc9f71d6b3ae97bfb9a0d49bc09b8fa95a8 authored over 3 years ago by Oliver Alka <[email protected]>

Feature/on disc experiment (#66)

* fixing bug: ModuleNotFound Error

* changed the location of reading_ms

* using OnDiscMSEx...

37deac7e4c144c580e93c47104b5866f2715b76b authored about 4 years ago by JihyungKim <[email protected]>

Fasta Viewer UI + Logic +FileNumbersHandler (#65)

* circleci ordner mit config datei erstellt, requirements datei erstellt

* most recent versio...

a41a10ec65da6bcf075f9c5159248390939f14fa authored about 4 years ago by Hillengas <[email protected]>

mzTabWidget with better loading functionality (#62)

* Update convertToMGF.py

* Added flake8 check on pull request

* Small change to test flake...

cc1e54b74ca1516df3e23029a9f95b6f9f1109c6 authored over 4 years ago by Wyrdrawere <[email protected]>

Fasta-Viewer(UI) + Fasta-Load (#61)

* circleci ordner mit config datei erstellt, requirements datei erstellt

* uploading the gui....

caf3ebd66829747c4c304b80cb164f0834c19edc authored over 4 years ago by Hillengas <[email protected]>

fixed crashing error of IDViewer for mzML files without TIC values (#55)

* fixed crashing error for mzML files without TIC values

* delete line

* Update gitignore ...

1c426cc609f3a8fba7a680a43442d60dac02b00e authored over 4 years ago by JangJang3 <[email protected]>

Update spell_check.yml

d0dd6586286319eb679a09b506b5b354ba529f4c authored over 4 years ago by Timo Sachsenberg <[email protected]>

Rename spell_check to spell_check.yml

604e899a75e0870a087bf719b47ac52ebe71f00f authored over 4 years ago by Timo Sachsenberg <[email protected]>

Create spell_check

558af72100f57e186fc352df954238d6b35d602f authored over 4 years ago by Timo Sachsenberg <[email protected]>

Fabian (#52)

* Update convertToMGF.py

* Added flake8 check on pull request

* Small change to test flake...

cd59d65ca4a6a603022803ae41c16366c5f08c70 authored over 4 years ago by Wyrdrawere <[email protected]>

additional test files

275d57a3827bda55c50402494d0ad69f9427ca95 authored over 4 years ago by Timo Sachsenberg <[email protected]>

advanced mzML fix

2b2efdb7c668372996ab33424e528dbd19c0ad87 authored over 4 years ago by Hannes Roest <[email protected]>

Merge branch 'Release_2.5.0'

84a7a4bc25061130e9a6ef320d78e8c6367abe42 authored over 4 years ago by Hannes Roest <[email protected]>

Release 2.5.0

4816ec683e043ff64186e81b4d2cc9697b888d0c authored over 4 years ago by Hannes Roest <[email protected]>

Merge branch 'feature/tutorial' into pyopenms-next

f6116a4162f95d53becf783a1c0f17232084f01a authored over 4 years ago by Hannes Roest <[email protected]>

expand Chemistry

099c3e6cec673cfca2a4016fb9cf4510dc93e064 authored over 4 years ago by Hannes Roest <[email protected]>

[DOC] explanation

df6c18087ad3c894c57a67bc26026c176fde890e authored over 4 years ago by Hannes Roest <[email protected]>

add to index

c4fba523275741cce85069bc042941732def708f authored over 4 years ago by Hannes Roest <[email protected]>

fix

e8599f0d979655d1cee371b236fcb0b2ad36964d authored over 4 years ago by Hannes Roest <[email protected]>

fix up Chemistry page

bed58e6ff2d00e4a68c8a5a57b4198e797c8d872 authored over 4 years ago by Hannes Roest <[email protected]>

add smoothing

ba8f94a7f54f7a1a1b90d59d99327f9e2044a70c authored over 4 years ago by Hannes Roest <[email protected]>

[FEATURE] update tutorial of TSG

d1b6cb4b51459833581d5ac034d34ac847c0f059 authored over 4 years ago by Hannes Roest <[email protected]>

Merge pull request #40 from OpenMS/feature/naseq

Feature/naseq

ed14a553d526cbae3768d0b83f4ab9647b95981b authored over 4 years ago by Hannes Roest <[email protected]>

more explanations

5686ed790c94ad3b8362ecf7b3c23517df0fa278 authored almost 5 years ago by Hannes Roest <[email protected]>

[FEATURE] add spectrum tagger

2a433c0344904dd2ba3316d0b1488c521a4309d2 authored almost 5 years ago by Hannes Roest <[email protected]>

[MOVE] code move

d2a76ffb03dcd0a78bf82220a7f78f3d3b478d1d authored almost 5 years ago by Hannes Roest <[email protected]>

[FIX] adapt

b89a1177b600cac294888d9bfd02768ad8e896bd authored almost 5 years ago by Hannes Roest <[email protected]>

NASequence code

308c78654861a5b7cf8f55975b068dd7872d6485 authored almost 5 years ago by Hannes Roest <[email protected]>

Merge pull request #39 from JangJang3/feature/App

Feature/app

a72952a409a829bebe21c7c4187dfcfe2adc7ac9 authored almost 5 years ago by JangJang3 <[email protected]>

fix minor changes

8edf7b27e89bc11292020a07ddcbb7f5605b73e5 authored almost 5 years ago by Jang Jang Jin <[email protected]>

adding default value to display full zoom xRange

4c1fb6a88fa1e38c1f0fef097817c2fd1fa80153 authored almost 5 years ago by Jang Jang Jin <[email protected]>

Merge pull request #37 from OpenMS/feature/massd

[FEATURE] mass decomposition

838a8931de2d8d34f4e324fb4f7d1c53ff8fc331 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #36 from OpenMS/feature/doc_id

Feature/doc

84ca8a52bd77f6bfa70f06d08a4cc8e0bde96447 authored almost 5 years ago by Timo Sachsenberg <[email protected]>

Merge branch 'feature/massd' into pyopenms-next

7f0e30a4d19ba1092a04cce3ef7c4e72602feb70 authored almost 5 years ago by Hannes Roest <[email protected]>

Merge branch 'master' into pyopenms-next

93c20ce4b443843910e952c1082fcd120f08c614 authored almost 5 years ago by Hannes Roest <[email protected]>

Merge pull request #38 from JangJang3/feature/App

Feature/app

b562e8e948a86cc5757cfa693a7e9e5d53fda2f5 authored almost 5 years ago by JangJang3 <[email protected]>

Update ControllerWidget.py

4b2440ecbf28332d34116bb4ed48c27a41b79c80 authored almost 5 years ago by JangJang3 <[email protected]>

Update ControllerWidget.py

b32494c358df8a8ffef965df772bb18241e1e80b authored almost 5 years ago by JangJang3 <[email protected]>

Update TICWidget.py

aa424e6b322afbea6b2ccaec281bb94565f94e89 authored almost 5 years ago by JangJang3 <[email protected]>

Update ControllerWidget.py

db6ea9d1f163f2e9c85ab501e87bd417fc594a11 authored almost 5 years ago by JangJang3 <[email protected]>

Update ControllerWidget.py

7610674eb6a308fa3ce5cd72e4a52125507fe2e0 authored almost 5 years ago by JangJang3 <[email protected]>

Update ControllerWidget.py

48928026fd18516ad4e4dae74f9e713b0f99a856 authored almost 5 years ago by JangJang3 <[email protected]>

Update ScanTableWidget.py

558410a163af7d42666b947882699c6877439d04 authored almost 5 years ago by JangJang3 <[email protected]>

Update SequenceIonsWidget.py

ae24a3bf4749feb993c2310c6497cc1967619b34 authored almost 5 years ago by JangJang3 <[email protected]>

Update ScanTableWidget.py

34a3d18abe180b783b8bd7322f61e8c40d1b2db5 authored almost 5 years ago by JangJang3 <[email protected]>

Update ControllerWidget.py

ecd0539f2d06f8d6d3b4d111daade5f04af47312 authored almost 5 years ago by JangJang3 <[email protected]>

adding peak annotations for existing ions in spectrum

b40df41aae3cadeff156d54ccc9e69ca52790ea7 authored almost 5 years ago by Jang Jang Jin <[email protected]>

[FEATURE] mass decomposition

520743e399c93fd1316671fc29fdf2d3e8580de9 authored almost 5 years ago by Hannes Roest <[email protected]>

typos

f2230784ebe8461db27b25784fb06715e314e808 authored almost 5 years ago by Hannes Roest <[email protected]>

[DOC] extend TIC docu

70adc6615cbeccad598fdd0ba9051ae9022cd52d authored almost 5 years ago by Hannes Roest <[email protected]>

fix problem

52ae44179999acb489a2de2877df7360cff05fd1 authored almost 5 years ago by Jang Jang Jin <[email protected]>

fixing minor issues

df1b758bcd55d9b59975204d507b2dab680187c2 authored almost 5 years ago by Jang Jang Jin <[email protected]>

fixing signaling way, adding new features (table, errorplot, sequenceIons) and comments

01f9388175fe92625cd3a2e95735f6ced231ed63 authored almost 5 years ago by Jang Jang Jin <[email protected]>