Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/pyopenms-docs

pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.
https://github.com/OpenMS/pyopenms-docs

small fix in bokeh command and logog

0885a610a92c610ee12e5e3075968ec0a216ddd1 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
wrong path

e7e08c0d241e2f6a201a4a6331b46a264d2fcba0 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
spelling

2ed343e81427d80c1f4055c16b576f7f28762b8f authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
rename

bbc3b575d58bed2913b26c68e223d6f333f64cb5 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
remove old stuff

4742795ac3baeb26ab4d2dd747fc0ad675f42de6 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
add jupyter config

224d0634d253dff71eb846fe257a0da5c1591acc authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
add jupyter server proxy ext

ba69811102b187789d4634c6f9ae9808eca726ee authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
plotting reqs

7516064fbae9037382384cdfd063b5a9464fda1a authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
reqs

18ee706963d015c41bcc4489f6360f2046364ad7 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
rename?

90e72463157d1463995281e2574e4a4d5c326da5 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
[FEATURE] bokeh app on binder

b7116c8d2629b2f31e33c59dc7b62289f69f4001 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
Update centroiding.rst

b10c64356ccef147234f0adb08c40ddb043f2376 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
Update centroiding.rst

52afb8998dac5588b87038605080af00527ce18e authored almost 3 years ago by Timo Sachsenberg <[email protected]>
Update centroiding.rst

0ecb32d96f18abc095db3038cea2cbd8e65da4f8 authored almost 3 years ago by Timo Sachsenberg <[email protected]>
Update centroiding.rst

1da184ae104a1b4a977424bb38a96c715b94ab39 authored almost 3 years ago by Timo Sachsenberg <[email protected]>
Add files via upload

97541ddfd276e80c56cde89c7aa4797c2bb88ecf authored almost 3 years ago by Timo Sachsenberg <[email protected]>
Update centroiding.rst

d1b18864ce0d6a8c191e3d484f52e7b0e45da32a authored almost 3 years ago by Timo Sachsenberg <[email protected]>
Add files via upload

4ad96aa7387ff74da6d37eb5588ce39a51b1ed93 authored almost 3 years ago by Timo Sachsenberg <[email protected]>
Add files via upload

46ea10fe81d14063bc5bb443a31e65da63723066 authored almost 3 years ago by Timo Sachsenberg <[email protected]>
Update centroiding.rst

87ff736c8c500715c8f2f11a208ce617a28fcc1e authored almost 3 years ago by Timo Sachsenberg <[email protected]>
Update index.rst

2050c98da90eadda0b44865f425c3ee909d9ffb1 authored almost 3 years ago by Timo Sachsenberg <[email protected]>
Revert "citation breaks notebook generation (#221)" (#223)

This reverts commit 807068652a6188e0071c7d4f5d96eb288f7d5679.

9edcfdf867421bb29847fb13b2abf7077c23e22e authored almost 3 years ago by Timo Sachsenberg <[email protected]>
Update chemistry.rst

c110e78009e78553867e6c263dcfcd36c95523f0 authored almost 3 years ago by Timo Sachsenberg <[email protected]>
add PrecursorPurtiy.mzML (#222)

9ce872f873521802ddd1ff192334e492e433a054 authored almost 3 years ago by Oliver Alka <[email protected]>
Merge branch 'master' of https://github.com/OpenMS/pyopenms-extra

68ba1264b8319b3c96732ae37b5ab9ff7b1db80f authored almost 3 years ago by Timo Sachsenberg <[email protected]>
add centroiding example

cf9599d53d171b5b60f0aeb1c73f7e8cb4379009 authored almost 3 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #217 from oliveralka/add/precursor_purity

[Add] precursor isolation window and precursor purity

3c66751e831bdd5c096355e2b3a0b5fb278b8c25 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
citation breaks notebook generation (#221)

* Update chemistry.rst

* Update chemistry.rst

807068652a6188e0071c7d4f5d96eb288f7d5679 authored almost 3 years ago by Timo Sachsenberg <[email protected]>
rework map alignment plot (#219)

968692c3a643b40aff79f4cede6bc89795942169 authored almost 3 years ago by axelwalter <[email protected]>
Update introduction.rst

f0ed6cfac490ec7c3da7cef20f98660172702479 authored almost 3 years ago by Timo Sachsenberg <[email protected]>
Update introduction.rst

38cc987cc177b277e0505079a00865ce36c6763a authored almost 3 years ago by Timo Sachsenberg <[email protected]>
Update introduction.rst

91439d699bb946b690dfa88be8645705b5053f3b authored almost 3 years ago by Timo Sachsenberg <[email protected]>
add import urlretrieve

b44f9fefb82c2ee1d34d689c59d4d7ab5fc79956 authored almost 3 years ago by oliveralka <[email protected]>
nop

8f5d189d0b1206e1e2d7fd68699526a2e5ccb633 authored almost 3 years ago by Timo Sachsenberg <[email protected]>
Add files via upload

7d8a3484f88348c66cf81dfcc34f9e613d94e4db authored almost 3 years ago by Timo Sachsenberg <[email protected]>
Update docs/source/datastructures_peak.rst

Co-authored-by: Timo Sachsenberg <[email protected]>

c40d148e45eb1dfa273de14c6b65ce84248b8b2c authored almost 3 years ago by Oliver Alka <[email protected]>
fix

edac2ed888abba3fb8fe5f5f8cf3aff6b5b847b1 authored almost 3 years ago by oliveralka <[email protected]>
minor changes

613b783be3b4b4240b6c30cd79306587ab04e634 authored almost 3 years ago by oliveralka <[email protected]>
fix typo

5397a33ba58458e09e1f2b1f04b0d23d0f01b675 authored almost 3 years ago by oliveralka <[email protected]>
add p iso window; p purity

b4a643e4abf0689d8cee8c31214d3befb3fb39b9 authored almost 3 years ago by oliveralka <[email protected]>
Update introduction.rst (#216)

b605987bad30a86f26c5f85df2229717580e8045 authored almost 3 years ago by Timo Sachsenberg <[email protected]>
Update index.rst

0c1ec653f873960b451f8a0528d6936fe2dbbb7f authored almost 3 years ago by Timo Sachsenberg <[email protected]>
add mirror plot (#215)

f4b25f69929571e269dc29c835ad6cb4f8fc3bba authored almost 3 years ago by Oliver Alka <[email protected]>
Merge pull request #214 from oliveralka/add/additional_files

[UPDATE] Urls to files in src/data/

be31299dc3f04eba7a1837d8e3119ee6762cee4a authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
minor changes; fix links

bf855024a0100140e079fdb90da336ea582840f2 authored almost 3 years ago by oliveralka <[email protected]>
Merge pull request #213 from OpenMS/feature/admonitionconversion

permissions?

baa6eaf4d8bb13b62aa5676e306a123972351b0c authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
permissions?

aaea74ccf55e88a45134f7b4de896e31e1ba2ae1 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
Update admonitionfilter.py

aef30950ace9c13b0af8d047c798198d94a4f0c6 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #212 from OpenMS/feature/admonitionconversion

[FEATURE] Add filter for admonitions

0e4eee007bd356393c77afbb99c688677b7a932d authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
use extend-ignore for flake lint

120f3f0bdc558f234e19e234744504e08abb4f74 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
lint

090a30937dc0b3992847c468ae2f99ef277025ad authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
Update installation.rst

fea56ce31a93b2da631781ab057a1968ac1d5dcd authored almost 3 years ago by Timo Sachsenberg <[email protected]>
linting

f044f40cd2cbe76934c4d185bd216b4caff8761e authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
allow longer lines in linting

71e6fbd7fecaf16a9af7243d2aac677d17964a97 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
Add filter for admonitions.

eeb21d5ebbe51bcf6632b7a80c36a2b852539c5a authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
Update installation.rst

27f5f5287a1b165e73c62f3b42027a0e3ba2d296 authored almost 3 years ago by Timo Sachsenberg <[email protected]>
Add an introduction to binder integration to doc (#211)

* add an introduction to binder integration to doc

* minor rearrangement

Co-authored-by: T...

dd08cfa9faefed285673da322d5d81651a5acd65 authored almost 3 years ago by JangJang3 <[email protected]>
remove spyder

aff6b6be73c8e8ea7c6083c5a404ed31061ae33e authored almost 3 years ago by Timo Sachsenberg <[email protected]>
Update datastructures_peak.rst

c895a87fc5a1c436851934445deb2b61d4e7f112 authored almost 3 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #210 from axelwalter/patch-3

Delete raw MSExperiment after centroiding

87321411b9b96f320b287636052804777320cd43 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
Delete raw MSExperiment after centroiding

4c26174933c684735de17ff69bd04fd110f84bf0 authored almost 3 years ago by axelwalter <[email protected]>
Update feature_linking.rst

b2143a10366052c2b880c5dc6bf5a7999a32b31f authored almost 3 years ago by Timo Sachsenberg <[email protected]>
expand with images

1da7c7ac74bf76615a7c98e4689995b910e6c6cb authored almost 3 years ago by Timo Sachsenberg <[email protected]>
added some example images/illustations

9d88a004deb316320234a5049420f0c2f38a9743 authored almost 3 years ago by Timo Sachsenberg <[email protected]>
some menu rearrangement

3334b49702c18dd29dff540728dbe60369d22d67 authored almost 3 years ago by Timo Sachsenberg <[email protected]>
rearrange menu a bit

fe724f0837ef9e21cc871f21a64e8dbdf9827ca5 authored almost 3 years ago by Timo Sachsenberg <[email protected]>
small reorder in menu

3fa3595ed1826cae4dec8f1febe0c632508f0062 authored almost 3 years ago by Timo Sachsenberg <[email protected]>
Update spectrumalignment.rst

d1dc7d0b9431f04345a57f4fe98211c742d40d92 authored almost 3 years ago by Timo Sachsenberg <[email protected]>
Link fixin (#201)

* added quick tutorial for hyperscoring, added NA mzml and fasta for future oligo tutorial

* ...

694d74d0c3aa6e4d387be6f6adac2a21bf385591 authored almost 3 years ago by Samuel Wein <[email protected]>
Removed pyOpenMS manual link from docs (#199)

* Removed documentation note

* Removed pyOpenMS manual link

* Removed pyOpenMS manual link

348a1597f56938a3c2f317a33236b4d2cfa6a433 authored almost 3 years ago by Vipul Bajaj <[email protected]>
add feature linking tutorial (#200)

* add feature linking tutorial

* fix get filename

8f1db054c76ea11f72b6ce57fc686938c0f110bd authored almost 3 years ago by axelwalter <[email protected]>
merge data_manipulation into datastructures (#194)

* merge data_manipulation into datastructures

* Update datastructures.rst

* renamed file f...

7bdcf57fce273e0fbc8da79be52d001d9a7aa5b9 authored almost 3 years ago by Timo Sachsenberg <[email protected]>
add map alignment tutorial (#193)

* add map alignment tutorial

* add plotly import

* Update docs/source/map_alignment.rst

...

954a042beaddb0aa6e83551cfb099f5470a70938 authored almost 3 years ago by axelwalter <[email protected]>
added quick tutorial for hyperscoring (#191)

* added quick tutorial for hyperscoring, added NA mzml and fasta for future oligo tutorial

* ...

36a33f70af81d07714fee3442c8e13b8ffedbd0c authored almost 3 years ago by Samuel Wein <[email protected]>
add contribute menu (#189)

* add contribute menu

* Update contribute.rst

026830b51be93adf4e3afee701a335a541dbac9c authored almost 3 years ago by Timo Sachsenberg <[email protected]>
add support menu (#188)

* add support menu

* Update support.rst

ae059d0ee76f5bf8449f32393864d3b6d51661bd authored almost 3 years ago by Timo Sachsenberg <[email protected]>
add zindex to sticky header css

01335068ae531e7af20d4f87fd8834ae525abd5c authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
Update feature_detection.rst

Corrected the FeatureFinders to now referring only to pyOpenMS classes - there was a mix between...

9243ffb96accb5482efcc66fab5de1b30c300ad5 authored almost 3 years ago by Efi Kontou <[email protected]>
Update feature_detection.rst

8b855384be70fd9a8af7bee3b5864344072bd35d authored almost 3 years ago by Efi Kontou <[email protected]>
Update feature_detection.rst

a18a2a93cffedef5dbae8501272ed1250073394a authored almost 3 years ago by Efi Kontou <[email protected]>
Update feature_detection.rst

220b4f2f80d4eb92ece0cf2f5f7da8950bb747dc authored almost 3 years ago by Efi Kontou <[email protected]>
Update feature_detection.rst

Correction on pyOpenMS list of classes and OpenMS algorithm (FeatureFinders) reference links

4e4a8e72ae548aeebe0904435769911fda857311 authored almost 3 years ago by Efi Kontou <[email protected]>
[COMMENT] removed comments related to Python 2.7 compatibility (#187)

e02723f001f491b2187a2ee16d11ae6f27eb53e3 authored almost 3 years ago by Eugen Netz <[email protected]>
Add MapAlignment and Visualization for Id_by_mz workflow (#178)

* Add MapAlignment and Visualization

* Update docs/source/id_by_mz.rst

Co-authored-by: Tim...

88c693ca6723e6cdaf70e806c1a6b5d62b493d90 authored almost 3 years ago by axelwalter <[email protected]>
Example code for spectrum alignment (#183)

* Example code for spectrum alignment

TODO:
- add to menu
- see if feasible to add mirror ...

b37f914bb499041f2262c630745a499425e37126 authored almost 3 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #184 from eeko-kon/patch-3

Update getting_started.rst

ddbe39b3b0527e5945d4fb5bc3a29c490245bc38 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #185 from eeko-kon/patch-4

Update introduction.rst

78c147e1d79409ec6bef9e2db7b89b6dcb66512e authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
try only testing changed files

141006305558d22175364bb9702c35eb76de0836 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
Update introduction.rst

2ac10a5b2d54cd5f6aa05cddada2b9b12cfcfbd2 authored almost 3 years ago by Efi Kontou <[email protected]>
Update getting_started.rst

7d852786b780e7ad96f991b45921a0c35847e93c authored almost 3 years ago by Efi Kontou <[email protected]>
Add plotly to requirements (#177)

1044d60854e047f771e52fd36724c03b820beeb5 authored almost 3 years ago by axelwalter <[email protected]>
Merge pull request #179 from OpenMS/fix/codesnippets

[FIX] All code snippets

2b268c16b7006251fe086981b865f0aeda418567 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
[FIX] mzml file format

51f633113feb9a03d9e4301302ee9f39af142b54 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
[FIX] mass decomp

073f5a1aaa2d6186c7abe65f2c106cec571cf63f authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
[FIX] getting started

c92ca57446c68d3d5b69c8fc652d02cfa6773ab8 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
[GHActions] do not stop at a failed notebook

1f68bf55122342754595c1308f5242f3302ed980 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
[FIX] deisotoping

4a1532227a47ef179bafd55d536ffbb7200391b8 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
[FIX] data manipulation

d13edae07c9cfcb7c5049740a0e13c78b442f188 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
[indents]

8fe43c3810d1bdd09017451ff2a6a55e5acc1474 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
[FIX] chemistry

7970a0af09747196db3b215c64910b005588b051 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>