Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/pyopenms-docs

pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.
https://github.com/OpenMS/pyopenms-docs

Update postBuild

5a8f49e446df5c5885b4fbfcd83f36c8572ade22 authored over 2 years ago by axelwalter <[email protected]>
Update postBuild

change pyopenms wheel file name

a16bae8af9fca27560786a6434aa17a9d38d84a7 authored over 2 years ago by axelwalter <[email protected]>
Update datastructures_peak.rst (#274)

update method names

f241515ab08bd6e15a7ade796fa5dfa659b75f93 authored over 2 years ago by axelwalter <[email protected]>
Merge pull request #271 from jpfeuffer/fix/apidocs

make apidoc much nicer. still not perfect. constants not working. som…

5d8d13df04497cf18ddb9f52ff1d9474bd5df536 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
revert action... impossible syntax

d2fef6616673302ee98f979eb1fae4b2750761b5 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'master' into fix/apidocs

30c45914e4207ec6f558ab627417095a9dc17014 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Update test-pr.yaml

f22ee94fa51cc62bdb111c9b093e88f8104e22fe authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Update test-pr.yaml

3d991a94e7e6088f1c982b9d1ae4106dd961dadb authored over 2 years ago by Julianus Pfeuffer <[email protected]>
make apidoc much nicer. still not perfect. constants not working. some classes double across modules.

4a03a7228a596492fd973e86dc422a23e582d4a0 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Rename occurrences of pyopenms-extra to pyopenms-docs (#270)

* Rename occurrences of pyopenms-extra to pyopenms-docs

* Update Readme

0238c6ceb7f0be3a7e70b09aea4368301d2673d2 authored over 2 years ago by Tapasweni Pathak <[email protected]>
Update .gitignore

e1ae7c668554afd857f8443c43d2b37b020981f1 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Update requirements.txt

fa80033ab994be69ecf977b8f723d59f0821e406 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
try again with python version

79f50c3113e9486980781fa0cb5e09afef8f7545 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Try readthedocs with python 3.9

1b388b7530f8223e5027c1386c4040d2856f0bb5 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #267 from jpfeuffer/fix/apidocs

improve downloading of wheels and how to display API docs

8311eed1090a4e9002f41691ca2287d75d9e2202 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
improve downloading of wheels and how to display API docs

93dea36a8677d9e2cd9c16f0e9c8904d83897990 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
???

c2e569e74acfe610b25bc3394fd3b49f8fe8dd53 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #261 from OpenMS/fix/autodoc

[FIX] autosummary correctly list package

44bd558adcfaa23aa8c374e684faffc878e0dde2 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
allow any manylinux wheel to be installed

128fffdfa1b5babd18062d90a86f1d07d528a4a7 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
[FIX] autosummary correctly list package

c6799e70bde469fa5bcc4284e7662242f247ce70 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
Update autodoc.rst

90a8f3b6d25a605bd6c9efa745dec1ace3940133 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #260 from OpenMS/jpfeuffer-patch-5

Add autosummary for classes

6f8a32d6f365dc119901fc6fb383fdc6d7e9637d authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
add classes to index

e29dab31bb04daf2da2b489c6a1ad296e9f29906 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
Create autodoc.rst

65acc06bb181678c63fb46d51533be234cd5e920 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
Add autosummary for classes

2cbb48a43709e0f941d902156293684c700b9d4d authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #253 from OpenMS/jpfeuffer-patch-4

[FEATURE] Add module/class documentation

f82f98566a4c881cbcaf733200842d2f92f25df4 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #257 from OpenMS/feature/isotopes

[DOC] add isotopes to molecular formula

b0a6930c5e3b49f2d58a6c52add793cf3dad7309 authored almost 3 years ago by Hannes Roest <[email protected]>
Update installation.rst

b7b40259bc42665a012332902839e006c8bc868b authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
[DOC] add isotopes to molecular formula

dfd4a3f19f0d0d8cb6c30e165b0086e39cdf8969 authored almost 3 years ago by Hannes Roest <[email protected]>
Merge pull request #256 from axelwalter/ffm-in-idbymz

use FeauterFindingMetabo in ID by mz workflow

d995a7b96812b9b5724c4ee1871ec8685a5eb929 authored almost 3 years ago by axelwalter <[email protected]>
update example workflow

bbc44a58a876d30056a0becccf4214d49e5a2a97 authored almost 3 years ago by axelwalter <[email protected]>
use FeauterFindingMetabo in ID by mz workflow

9f4b6f0e40c3f9f65bb079135a97b672e8bde713 authored almost 3 years ago by axelwalter <[email protected]>
Merge pull request #255 from axelwalter/update-id-by-mz

remove obsolete ConsensusMapDF definition

5efda519e4bac1001d3163c96a8becc1bf92a634 authored almost 3 years ago by axelwalter <[email protected]>
remove obsolete ConsensusMapDF definition

5bab8061a07d0a576bb701d1e00bd3005cfb6f7b authored almost 3 years ago by axelwalter <[email protected]>
Merge pull request #254 from axelwalter/feature/update-feature-detection

update feature detection tutorial

16a1a591b4d260e61db9007118bf7affe318d8ee authored almost 3 years ago by axelwalter <[email protected]>
update feature detection tutorial

add metabolomics untargeted detection
include metabolomics targeted detection in general feature...

ac1860104273e1f051a813256c10bd4c8dc3b144 authored almost 3 years ago by axelwalter <[email protected]>
make install commands nices

7c65a22f050fd52c9dccb7539e2579829b334f5a authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
add autodoc extension

cda63e94a49e1c2f05848f7a58eec6feccd3a44b authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
api-doc added

772b968c64464525f0699046861b30c99dd89922 authored almost 3 years ago by Rahul Agrawal <[email protected]>
Update conf.py

58e3697a02434cc84e5ccfe22c99e19ef59482c3 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #251 from OpenMS/jpfeuffer-patch-4

Make nightly doc clearer

1810ac931490b44bbd5ec276fa6bc427214f9114 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
Make nightly doc clearer

e874888ceec6f72bada61e3dd12658c4683baf1e authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
sudo

9242043977dd80c37d209378143711f748d235b6 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
do not use manylinux for actions. we dont build pyoms anymore

0f2e64624de3e3eeaa96a7c4b12f65015f22256b authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
Also use 3.7 in build-openms action

0a759f079a468bfa9c9e26ca6b0b13fc5e1300e9 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>
Update installation.rst (#250)

* Update installation.rst

* Update installation.rst

* Update installation.rst

Co-author...

c7d10717a5e069e57245e96247d322ab190c8abf authored almost 3 years ago by Rahul Agrawal <[email protected]>
Update requirements.txt

5aac3a33c4ed5928690b8b5ad60a4f8ee163fe7e authored about 3 years ago by axelwalter <[email protected]>
Update requirements.txt

3214d1363509b8e45b9264419d8eb1ff7aabebf0 authored about 3 years ago by axelwalter <[email protected]>
Update requirements.txt

d0f3cc301f37e173b077920ada7d3830b1734a4d authored about 3 years ago by axelwalter <[email protected]>
specify massql version

5fc3640b8b6ae535c998ed6ccd33be96d60ac724 authored about 3 years ago by axelwalter <[email protected]>
tutorial for massql export (#249)

* tutorial for massql export

* add massql to requirements

* change text

e0fb74a8a1d22bec2ba680c597695bd9f7d9bb7d authored about 3 years ago by axelwalter <[email protected]>
Update feature_detection.rst

89f96af680269739a8a8982eefa26c1525df710e authored about 3 years ago by Timo Sachsenberg <[email protected]>
add some functions (#242)

* add some functions

add some simple functions, dealing with Param

* Update docs/source/pa...

a34583ae94286f780f87801462fd683f94873538 authored about 3 years ago by Arslan-Siraj <[email protected]>
[FEATURE] pandas DF conversion tutorial (#236)

* add pandas conversion tutorial

* fix import

* Update docs/source/pandas_df_conversion.rs...

e73f55f8d9e7e4543cd1a2c9281b1071207031b6 authored about 3 years ago by axelwalter <[email protected]>
use proper variable name for InstrumentSetting instance (#239)

d4aba50e17d88fbf58394ce5a07b68f821f8a6b2 authored about 3 years ago by Timo Sachsenberg <[email protected]>
updated supported versions in install instructions (#192)

* updated supported versions in install instructions

* removed python 3.6

5411e9d992823dbaa67a71f339660b27afeb5646 authored about 3 years ago by Eugen Netz <[email protected]>
add mzML file path for ffmid (#237)

236d4c13041043aaf3aacc6d1433a540186c04db authored about 3 years ago by axelwalter <[email protected]>
Adding Note for getIdentifier Method (#238)

* Improvement

* Fix

* Update datastructures_id.rst

Co-authored-by: Rahul Agrawal <rahul...

b6b8656177771ef5913a0ee6253cf45702919446 authored about 3 years ago by Rahul Agrawal <[email protected]>
Merge pull request #233 from rahul799/feature/ml-tutorial

Adding ML Tutorial

f3264f97ba64ff326f996fe3c45c86a19a0515c1 authored about 3 years ago by Julianus Pfeuffer <[email protected]>
ML tutorial added in TOC

886ec5998d292dd171f862bc29fd7dc02c5265fa authored about 3 years ago by rahul799 <[email protected]>
fixing dependency

e803c189d5251dd04bc51c8ed69e651bf2a1c21b authored about 3 years ago by rahul799 <[email protected]>
Typo

af9bf0dac6a1110f7d1266d5276db70a38d2da3a authored about 3 years ago by rahul799 <[email protected]>
Adding urlretrieve

136f09103ea6d96e98ee88201e71947621f5e49a authored about 3 years ago by rahul799 <[email protected]>
Merge pull request #234 from rahul799/add-tsv

tsv added

4410d064f36d7c1552f118ffc35ef8e385efa993 authored about 3 years ago by Julianus Pfeuffer <[email protected]>
tsv added

182c910d816c569e3cc713508e811e3a177a4269 authored about 3 years ago by rahul799 <[email protected]>
Update ML_tutorial.rst

48d0734bf4857c7cd1d6201a9092a444bd184c7c authored about 3 years ago by Timo Sachsenberg <[email protected]>
update map alignment visualization in example workflow (#227)

* update map alignment visualization in example workflow

* fix getting name of fm for plot le...

3df2341942593760209d6b1d86fc1bca4226778f authored about 3 years ago by axelwalter <[email protected]>
Update ML_tutorial.rst

8f7280bfc6ba86c3222d135b8b17de4eafc958b5 authored about 3 years ago by Timo Sachsenberg <[email protected]>
Update ML_tutorial.rst

11853f8304144672c42c27a207ebb45e031516db authored about 3 years ago by Timo Sachsenberg <[email protected]>
Update ML_tutorial.rst

6baec4061a20a851aa6d0c1e998ef4d838f7cc4c authored about 3 years ago by Timo Sachsenberg <[email protected]>
trying to add install command to jupyter notebook

e604569f8d7296e84fc0c9c3d3d1dcc88242a729 authored about 3 years ago by Timo Sachsenberg <[email protected]>
Update datastructures_id.rst

c0c897b46fe2311cd00d0e762bc51f9b1a274e39 authored about 3 years ago by Timo Sachsenberg <[email protected]>
fix

64708b00fdb51d7be5dbd49fd74a2184a25b4e07 authored about 3 years ago by rahul799 <[email protected]>
fix

b7d0c30c147b2b4b0caf92e68fd58d1d1b44b31d authored about 3 years ago by rahul799 <[email protected]>
fix

5d885fa1afc4e3cfd01748e187e8504d37ca7e29 authored about 3 years ago by rahul799 <[email protected]>
ix

aa2abd00c1131f416dbb166a0b6ab825883bab39 authored about 3 years ago by rahul799 <[email protected]>
fix

b6e27709d0755980063f37df4e66bc7ee0da14a2 authored about 3 years ago by rahul799 <[email protected]>
fix

51f9dbba42db0f6d2f4ea267500f5184a85318d4 authored about 3 years ago by rahul799 <[email protected]>
quick fix

59472bbcf41d7150389ba1741bb81587ff7ee848 authored about 3 years ago by rahul799 <[email protected]>
files added

9c81b7041a2fbdb6918ca87b88409c48a1107782 authored about 3 years ago by rahul799 <[email protected]>
Merge pull request #229 from jpfeuffer/bokehapp

Interactive section: add picture and better description

1f154aac541b49843f299f1f46d867c4009cbdfd authored about 3 years ago by Julianus Pfeuffer <[email protected]>
add picture and better description

a5e18e837e653c0bfb9d85560c1cd382a68f6f54 authored about 3 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #228 from jpfeuffer/bokehapp

Section about interactive plots

95576c58dd207a6524ca4f3266eedc2ef8c55f90 authored about 3 years ago by Julianus Pfeuffer <[email protected]>
do not install pyopenms from pip when testing prs

f5c81201c8dd4cfbed6f4a022cbb8cf9f06c148a authored about 3 years ago by Julianus Pfeuffer <[email protected]>
file path

265b4f659d7c5869884cf2cd85c8dd5549ac3f38 authored about 3 years ago by Julianus Pfeuffer <[email protected]>
add to index

de35c2aafcaf595e54bad81eba356f02d99ccd5e authored about 3 years ago by Julianus Pfeuffer <[email protected]>
add example ipynb

02061675dcd66be9346ae924b7fe6c8954826a44 authored about 3 years ago by Julianus Pfeuffer <[email protected]>
no pyviz?

666de7d613885ebb7433ad68b4e8a50a1e2080e0 authored about 3 years ago by Julianus Pfeuffer <[email protected]>
extension is installed by pip now

8357a6eafaee8de8473ced569db0d085e8704a5b authored about 3 years ago by Julianus Pfeuffer <[email protected]>
add extension for datashader zooming

fc1544a452717ab21806e4689267c3967ce7da97 authored about 3 years ago by Julianus Pfeuffer <[email protected]>
restructure back

f46c990979914cff93c97cc34d09cc028e9e452d authored about 3 years ago by Julianus Pfeuffer <[email protected]>
finish rename

bb48cfb1405af947b772437199ad71288e7ffd27 authored about 3 years ago by Julianus Pfeuffer <[email protected]>
rename and restructure

09ccb17ce163c8b1950495ef91542de2787e42aa authored about 3 years ago by Julianus Pfeuffer <[email protected]>
Wrong path

489538ee9ca332107bb1cc74b0ea8b1f0f02f3b7 authored about 3 years ago by Julianus Pfeuffer <[email protected]>
Update jupyter_notebook_config.py

2eda5e34338d0402e45a3033228d996774b06fc9 authored about 3 years ago by Julianus Pfeuffer <[email protected]>
remove panel

b1e9389f58a41e8df2a5bc9e67654ec9246b7b13 authored about 3 years ago by Julianus Pfeuffer <[email protected]>
changes?

df2b8c7467bf4846b9a2f9c835f48b1cdc24ae87 authored about 3 years ago by Julianus Pfeuffer <[email protected]>
rename

b2eeeec1eb893b5034cf8fc53c24f8e8a3a3a13c authored about 3 years ago by Julianus Pfeuffer <[email protected]>
settings

a2da4f64cd0ae97354f61fb88dfcf5f22e8f8572 authored about 3 years ago by Julianus Pfeuffer <[email protected]>
try fix?

a354305ef8d10ebaf9b11a394ef7c1b305411e6b authored about 3 years ago by Julianus Pfeuffer <[email protected]>