github.com/OpenMS/pyopenms-docs commits | Ecosyste.ms: OpenCollective

Update README.md

929de7d7e1ea2860edea5880721e67b307971586 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

attempt to fix pyopenms in binder

0570ea2641a0844f5005626352013bcbfe74729d authored almost 2 years ago by Timo Sachsenberg <[email protected]>

fix

893f9918e8f250ebce2f2209499da93576e667cc authored almost 2 years ago by Timo Sachsenberg <[email protected]>

test environment.yml file

3a4f8221538e395cda2086092f16360e6eac6e48 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Update postBuild

c2af21a4ea752cf2ac06613a2ebd146ffb48c7ae authored almost 2 years ago by Timo Sachsenberg <[email protected]>

attempt to fix python version used on binder

9d7285350ec77ef1b0e4c6819c01845e2e498fc0 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Update .readthedocs.yaml

6f30e897c2f3a5a3162d17929933768a78f68fc8 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Merge branch 'master' into new_background

58ee8b7ee0265e3efa2ea846b7c2e2967360ad95 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Update requirements.txt

d49af38d4d0591e7cfb16d433e2bba597ced0496 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Merge branch 'master' into new_background

bc05ca77e0a6a29520281e2d057832ad8cb52ae2 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

fix flake

d5dad04214e1295f10cc072a8bab184e48e6f38d authored almost 2 years ago by Timo Sachsenberg <[email protected]>

consistent python version

5102ca460f4ba2ffb08f138b9225057928d024b6 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Merge branch 'master' into new_background

34b0883b70f841a2987508d34f0850265d2e1178 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

fix action bug

05f0e98a22f2b434a07781328f1db046634bfd44 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

update python verison in actions

5bac73a1027202dafa6a15e6ab9aa96647cdc139 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Merge branch 'master' into new_background

ae5f9f0fe24f92968da417a554e24f16b4e07386 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Update test-pr.yaml

96c1c0d5a8ae9af6a4276bdca264282db7a75ac7 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Update build-push-notebooks.yaml

8172ef437f7e70e27c257d1e29ba145ed54317b2 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

added orbitrap diagram

0b8e3b5f25cd57b27c50f6f4fb04694f3530bb93 authored almost 2 years ago by greengypsy <[email protected]>

added a full stop to chromatogram definition

bb1b780063a1b3f19d089237e0e2aeaf22455821 authored almost 2 years ago by greengypsy <[email protected]>

made some minor adjustments to the glossary links

3daa94db47aeb3e881db3fefde75f53745e72c59 authored almost 2 years ago by greengypsy <[email protected]>

tidied up glossary links

449c36f9830c67b51c58c0be92531707f663ad6b authored almost 2 years ago by greengypsy <[email protected]>

fixed images from markdown to rst. Made one adjustment to glossary sorted flag (indentation)

4b3ecdc9d8fae7e6608511ca2a1c155cf5bc37dc authored almost 2 years ago by greengypsy <[email protected]>

trying to render glossary and tooltips

0be577ee907c5d51ffc494b5a66f6e5b8a7da86e authored almost 2 years ago by greengypsy <[email protected]>

tried to use prefix sphinx to render tooltips

cab46d790b8c02155de0ad983dde177bac76b833 authored almost 2 years ago by greengypsy <[email protected]>

Merge pull request #317 from OpenMS/jpfeuffer-patch-6

Update py version of wheel to install.

45156078725f3d10b13d78c114b393c29150dd6b authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

trying to fix tooltips and sort glossary

5bbbe7d79e4dda4c74c06c89d250ffaed80e3bc2 authored almost 2 years ago by greengypsy <[email protected]>

Update py version of wheel to install.

Probably ubuntu_latest is now 22.04 and comes with py 3.10

edf58d825f6ec3db2a7fd74c5d84561d754fb848 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

added glossary to index

30914648302e6bc0ac5276aaa8de5fa9f1d48af0 authored almost 2 years ago by greengypsy <[email protected]>

added glossary

07ef3ee75c1ea6a0900cc90469e9d9bef8195f8e authored almost 2 years ago by greengypsy <[email protected]>

bullet points edited

860dda85369b579e3a0737fe9fa2c860a84db3f5 authored almost 2 years ago by greengypsy <[email protected]>

changed admonition code and fixed image directive

da3dec4c6188457ba2adb635389eb4efaa4d4994 authored almost 2 years ago by greengypsy <[email protected]>

changed css to change appearance of admonitions. Fixed math equation

0d031c037005413e9d68d7383b71ad53ad292f61 authored almost 2 years ago by greengypsy <[email protected]>

add maths and fix video admonition

1791dffbaf6f9d73419b9c85aebd296144974612 authored almost 2 years ago by greengypsy <[email protected]>

change headings, add admonitions

b75c7a1e0ac4c2cff85dea49f08c5a485a43283a authored almost 2 years ago by greengypsy <[email protected]>

Merge pull request #315 from OpenMS/jpfeuffer-patch-6

Update everything but sphinx to newest version.

cccc1b0c2950bdfc94e7ef6fd70d2fa38969bd68 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Update everything but sphinx to newest version.

supersedes #314

ac51f67eb4b7b4e79bc3b3f382c96ff8b40a1e7e authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Update README.md

a85c194eb3c4a97ab9ea47d39f1a4a2c19c3b7f0 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

PIWIK Script added (#312)

* PIWIK Script added

* comments added

* file name changed

4780d811ee97ff0d0b6472182f8c855bf7f0d5c8 authored almost 2 years ago by Rahul Agrawal <[email protected]>

Update build-push-notebooks.yaml

82805ad2c79662b2d7acc0bcb3114e4ba8073628 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

remove pyopenms from reqs

we will install from gh actions artifacts

1c7c970a75f12a87f00c33e26438b4e6a266c424 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

update postbuild correctly

18241bacca54ed9787f3d489cf63edb8eaabac03 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #308 from Happy-reindeer007/master

Create issue templates for different use cases

32222ed20230cc1be80997c3737c39e0b16b61f6 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Merge branch 'master' into master

0e3cc14891b8aaaa122d8eefecd43c922a765899 authored almost 2 years ago by Happy-reindeer007 <[email protected]>

Merge pull request #310 from OpenMS/actionsVers

[UPD] actions versions

37b87a40a3f64b4be26950d7ebff3db196f91aac authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

[UPD] actions versions

751a998493231737754d54fa3629f3713815d5cd authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Update README.md

00e025bae9585b73566378d72b0dc92f44f5a6c8 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Add more trigger events to action

ad7b54916c5525a463d54d0b7039e18e682e0990 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Update .github/ISSUE_TEMPLATE/documentation-issue.md

Co-authored-by: Julianus Pfeuffer <[email protected]>

7a20ab478d95cf394310c1423ec90ac3a28a83fe authored almost 2 years ago by Happy-reindeer007 <[email protected]>

Update .github/ISSUE_TEMPLATE/bug-report.md

Co-authored-by: Julianus Pfeuffer <[email protected]>

550002c2b04d610a6bebf50759655aec11729e15 authored almost 2 years ago by Happy-reindeer007 <[email protected]>

Update .github/ISSUE_TEMPLATE/bug-report.md

Co-authored-by: Julianus Pfeuffer <[email protected]>

fd8b081ccf9125a38d5e9996fd9f5525eef76875 authored almost 2 years ago by Happy-reindeer007 <[email protected]>

Update .github/ISSUE_TEMPLATE/bug-report.md

Co-authored-by: Julianus Pfeuffer <[email protected]>

339b0b785ab2405039f43663bdc35ab688a4d4ef authored almost 2 years ago by Happy-reindeer007 <[email protected]>

Update .github/ISSUE_TEMPLATE/documentation-issue.md

Co-authored-by: Julianus Pfeuffer <[email protected]>

56c3e45b845b1fc032fa02fa729c5d2389c4ce9d authored almost 2 years ago by Happy-reindeer007 <[email protected]>

Update .github/ISSUE_TEMPLATE/bug-report.md

Co-authored-by: Julianus Pfeuffer <[email protected]>

2203b58defc4b1a23e78dee29260f3b4d4cae249 authored almost 2 years ago by Happy-reindeer007 <[email protected]>

Update documentation-issue.md

17a7787f82085ecd01cfadf92605f1616d6088c5 authored almost 2 years ago by Happy-reindeer007 <[email protected]>

Update bug-report.md

389f0bcf6c52abb0dfcb96799c6223120328b0f5 authored almost 2 years ago by Happy-reindeer007 <[email protected]>

Merge branch 'OpenMS:master' into master

3974736761a84e21601cb891bff33303e3ccb2dd authored almost 2 years ago by Happy-reindeer007 <[email protected]>

Restore bug report template

230557086cba6a61a94f49b40da19d453c063675 authored almost 2 years ago by Happy-reindeer007 <[email protected]>

Update README.md

3c216388b56de1cedb263824a831782d4e947467 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Update issue templates

e8b7e0bbb792768db92e16a8dcda52e3d42b44ef authored almost 2 years ago by Happy-reindeer007 <[email protected]>

Update bug_report.md

33bbbeebfe884ddc2f9a2e5c86b31a973d67b836 authored almost 2 years ago by Happy-reindeer007 <[email protected]>

Enable parsing docstring signatures

15367cda27a620a41da6932a0259c356454cf0ca authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Force rebuild

b9ee6c10ae2e86b54426c73def39a5fb16a698e9 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

WIP- creating issue templates

7b0726c4944b7ef9513f644f2707f54b72444eeb authored almost 2 years ago by Happy-reindeer007 <[email protected]>

Merge pull request #295 from tjeerdijk/patch-1

Update introduction.rst

d5252f961747925ffae8ac15b40c4b0073e93d82 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #301 from OpenMS/jpfeuffer-patch-6

[FIX] do not annotate groups since they cannot be filtered correctly

352b8ff30ea2f6b889bab8e3f70b1e9abb9b1c2e authored about 2 years ago by Julianus Pfeuffer <[email protected]>

do not annotate groups since they cannot be filtered correctly

fixes #299

0bdb9e49e637ea85cdbfe83cda8b19e9bb230273 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #300 from axelwalter/fix/failing-notebooks

[Fix] Failing notebooks

cf3684715b35612f9776612510f404455a56a492 authored about 2 years ago by axelwalter <[email protected]>

fix links informatik to cs

b49aac5cdb74ae3c00a3b8054edf04e945156ab7 authored about 2 years ago by axelwalter <[email protected]>

fix IIMN example

7b9c7622059f0dce47d034e2ec23570d5b213226 authored about 2 years ago by axelwalter <[email protected]>

do not overwrite with latest pypi pyopenms version!

e034992fa0e35f65be93fa1440e02222bb1468ba authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #298 from OpenMS/update/pandoc

[UPDATE] pandoc to 2.19.2 for conversion

34de46d135ab051a1f48a50c6772340663cabdb0 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

[UPDATE] pandoc to 2.19.2 for conversion

9ee981d9305c95da238c7dddd8da0e76696ef44c authored about 2 years ago by Julianus Pfeuffer <[email protected]>

collect and list failed notebooks in PR action

951877acb6b8a670d79ba369f20ee1f3ae5eb7f3 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

fail step if a notebook fails

38ce4eea952d34d2cd6a8d095fa11f590ac7cfd3 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Update test-notebooks.yml

a5e668ac7a5c5a5db4953d5938466a77160bfeb6 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Update build-openms.yaml

1ec4da9da65e0ef5e477a1cad6003b656a278bfd authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Update test-notebooks.yml

c5e5da6c8f14e145d3fa919e17bf5fe9f5bcef1f authored about 2 years ago by Julianus Pfeuffer <[email protected]>

fix app

03919192e47ec430529bb92cff8038bcf1a3a35a authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Update introduction.rst

Many minor edits. I shortened the text here and there and made the concepts more consistent espe...

170440291f4f3d0685ec5470d878a7748289397c authored about 2 years ago by Tjeerd Dijkstra <[email protected]>

update GNPSExport IIMN tutorial

63fb999f131f6c3eccfa52ad4181eb1b338f9f1d authored about 2 years ago by axelwalter <[email protected]>

Update conf.py

ce1cce0d38a19b32cde0e8d136328653a0affe64 authored over 2 years ago by Julianus Pfeuffer <[email protected]>

Update conf.py

d1d135a7510ec606b81164b3111b257f0a99ebfd authored over 2 years ago by Julianus Pfeuffer <[email protected]>

Update conf.py

7786534e669f2c00a61f73c1f37c8fa8ff66245e authored over 2 years ago by Julianus Pfeuffer <[email protected]>

Update conf.py

09b533b6e4dea454b463ee9639855eda2745d865 authored over 2 years ago by Julianus Pfeuffer <[email protected]>

Update conf.py

6f13e5764805adbcdf907295768aab1810a9a581 authored over 2 years ago by Julianus Pfeuffer <[email protected]>

contextlib

5312d5d04135976323db56d5e0f380bf36142bca authored over 2 years ago by Julianus Pfeuffer <[email protected]>

forgot colon

f64a054edd7fdc2052391c6049d3b75bda0d153d authored over 2 years ago by Julianus Pfeuffer <[email protected]>

try to fix nightly wheel download

b0719298e11d57fa65a832ed31cd124d1767713e authored over 2 years ago by Julianus Pfeuffer <[email protected]>

Update conf.py

48e6b78dbb0c1b1cb529a7db3cd6609dc9337e1c authored over 2 years ago by Julianus Pfeuffer <[email protected]>

Update conf.py

1ba4b92c99ee38e7344cf59f7fdd1fa1d93c229b authored over 2 years ago by Julianus Pfeuffer <[email protected]>

Update conf.py

a9ca3d297fe193dd65d4d444bc0dba2ca7dcae7d authored over 2 years ago by Julianus Pfeuffer <[email protected]>

Update GNPS_export.rst

Download aligned mzML files.

d0c856354c8eab261daf3db647ed9dca0405b151 authored over 2 years ago by axelwalter <[email protected]>

Update metabolomics_preprocessing.rst

Load aligned experiments from file for ID mapping.

d3d7e1f9d6decccc253cd408f54f636e2f382990 authored over 2 years ago by axelwalter <[email protected]>

Update metabolomics_preprocessing.rst

fix issue with code block

e0f4fcd559f826dc362f48d85dddc12b323d1dcd authored over 2 years ago by axelwalter <[email protected]>

Merge pull request #286 from axelwalter/feature/GNPSExport-tutorial

[Feature] GNPS and untargeted metabolomics tutorials

8b72f4a6b937eaf9bc7d0fd4f0f9e4a99e5ca87b authored over 2 years ago by axelwalter <[email protected]>

add GNPS and untargeted metabolomics

d2d1637274f274e0b65bae9a30c981535373921e authored over 2 years ago by axelwalter <[email protected]>

Create faq.rst (#282)

* Create faq.rst

* Update faq.rst

Change headings formattings to the one discussed.

* U...

5e59a178aa72c63ceefba17d1ab10184f1224d19 authored over 2 years ago by greengypsy <[email protected]>

check table formatting

7e5b47ea175a0c4facfccf5cc26a0b7f2e1899df authored over 2 years ago by axelwalter <[email protected]>

Calrify state of get_df() (#277)

Clarify that exporting to Pandas DataFrame is still a nightly feature only available in nightly ...

041394469a8883acb9ba9f51b8df731732856e0a authored over 2 years ago by Lorenzo Castellino <[email protected]>