github.com/OpenMS/pyopenms-docs commits | Ecosyste.ms: OpenCollective

Merge pull request #350 from OpenMS/fix-changed-files

Fix changed-files

8ea3969bf5558ff8485fbb5f69a7e712bda267b5 authored over 1 year ago by Samuel Wein <[email protected]>

Update code-blocks-linting.yaml

limit directories searched for rst

d5aac490bf7aefc476bbff8bd15d3e813a5ffdc5 authored over 1 year ago by Samuel Wein <[email protected]>

Ignore `_templates` directory

See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#filter...

d76c18415296b3971885b8abcda77133e1561ad1 authored over 1 year ago by Samuel Wein <[email protected]>

Update switcher.json

5ee85e448c04b6025e05f95fce7df61385c5a3ef authored over 1 year ago by Julianus Pfeuffer <[email protected]>

add switcher.json

cb5f374bff122ba339fd8f05b848f861b88fd682 authored over 1 year ago by Julianus Pfeuffer <[email protected]>

Update test-pr.yaml

add sub-directory support see "Get all changed files using a list of files" @ https://github.com...

9f4944abef2c919f55fa0be16b13ce7762b0fe68 authored over 1 year ago by Samuel Wein <[email protected]>

Fix changed-files

Path spec should be part of `files:` not `path:`

4e69c4be861e2db0c02fb4982ab182db5dde3f12 authored over 1 year ago by Samuel Wein <[email protected]>

re-added requirements processing

b664326dd5a79f3cfcf7c487f18c4247f92a6810 authored over 1 year ago by Samuel Wein <[email protected]>

Merge pull request #340 from OpenMS/pypi_local

Pypi local

951bf731cd87d5b5ecd395d2c821054f0883af70 authored over 1 year ago by Samuel Wein <[email protected]>

Merge branch 'master' into master

f123040e7a67175252a60256511dce9be340f4c6 authored over 1 year ago by JihyungKim <[email protected]>

elaborating information about fragments

eb6ca0c05b7d47473e66c1f30795d7b6a3793221 authored over 1 year ago by JeeH-K <[email protected]>

add pytest as a requirement (#345)

* add pytest as a requirement

Seems that pytest is needed for testing?

* reaplce nose with...

3f2b344d70aa66ae75f1417f74d9ca54e7e7d423 authored over 1 year ago by Joshua Charkow <[email protected]>

fixing linting warning

b5aac3b9d9244c570e921435a3e10ee7f9c25ac1 authored over 1 year ago by JeeH-K <[email protected]>

Expanding theoretical spectrum generation tutorial by introducing more parameters

For the issue https://github.com/OpenMS/pyopenms-docs/issues/291

a3b0f7a6da0d1957e9082804820034e90e67273f authored over 1 year ago by JeeH-K <[email protected]>

Update datastructures_peak.rst

fixed plotting imports

bd4afc8e654ece73c5bc2d6ba33b7ab7498ac452 authored over 1 year ago by Matteo Pilz <[email protected]>

Update spectrumalignment.rst

fixed plotting imports

5dcf4eadb5055e78e976fa29fa59ee8d32607158 authored over 1 year ago by Matteo Pilz <[email protected]>

Update theoreticalspectrumgenerator.rst

fixed plotting imports

556753645ab4ff46f2014520c792c17269da3357 authored over 1 year ago by Matteo Pilz <[email protected]>

pypify postbuild

0e61b3e5c5fa14e5b531e344f98b8b95e31f10ce authored over 1 year ago by Samuel Wein <[email protected]>

update test-pr

a653e2b0d2d514ce6df544c5e20fbaa605e94ab6 authored over 1 year ago by Samuel Wein <[email protected]>

update test-notebooks to use our pypi server

d18acea12108c8d0db5a0f03876eb182982cd95f authored over 1 year ago by Samuel Wein <[email protected]>

use our pypi server

2ce621ecff08a84fd87b8be33848f1322aff86e4 authored over 1 year ago by Samuel Wein <[email protected]>

clarify ref to nightly

0f0243130943a4b6be4dba3628aadcf382ec0a98 authored over 1 year ago by Samuel Wein <[email protected]>

update install information for nightly

8e51dbcb58ad4d56d60ca344a96211d11d9a8e8c authored over 1 year ago by Samuel Wein <[email protected]>

added ref to nightly builds

e6c2a3560dbf6fa2e98d1ded8f3f7935d36d0de0 authored over 1 year ago by Samuel Wein <[email protected]>

Update documentation cross references (#327)

* added linenos & cross references

* Update docs/source/datastructures_id.rst

Co-authored-...

215d9084b75389422d41be98a83df305cc530bda authored over 1 year ago by Matteo Pilz <[email protected]>

test double terms

14ed8af3c75d1b5bd49218a2944c3c4a5e2e9dea authored over 1 year ago by Julianus Pfeuffer <[email protected]>

work around blacken bugs

7c091cdb44c1f5fd3ccebe2a5bf38aa349689da6 authored over 1 year ago by jpfeuffer <[email protected]>

work around blacken-docs bug

603e1af29b5c607f3ba0fbd7ea31276fdf695b72 authored over 1 year ago by jpfeuffer <[email protected]>

test blcken

82c079c899413554d0174f3786122158624d4343 authored over 1 year ago by Julianus Pfeuffer <[email protected]>

Update code-blocks-linting.yaml

78d63207b259d18b4a9eceba6e9fe0a2bbe8302b authored over 1 year ago by Julianus Pfeuffer <[email protected]>

Replace flake with blacken-docs for linting (#328)

---------

Co-authored-by: Julianus Pfeuffer <[email protected]>

81dc9a51d054f0c8dbc3c4d6c0642d9d7d69865e authored over 1 year ago by Matteo Pilz <[email protected]>

Merge pull request #333 from OpenMS/fix/blacken

[FIX] blacken and dozens of other warnings. Also parellelize build.

0e25ee8719bb51feb427c4bf622247cd2b705c2e authored over 1 year ago by Julianus Pfeuffer <[email protected]>

lint

5815b6234050e867c546fcd04e7fb5eeb2579588 authored over 1 year ago by jpfeuffer <[email protected]>

[FIX] blacken and dozens of other warnings. Also parellelize build.

211868d21db3b1fe5e0f1379b60927eade2311a9 authored over 1 year ago by jpfeuffer <[email protected]>

Merge pull request #332 from OpenMS/feature/glossarywarns

[FEATURE] Glossary warnings

63741f9cb07393f01cb6ffa48f4d5fb902681313 authored over 1 year ago by Julianus Pfeuffer <[email protected]>

lint..

d638126eb4308be6692d7cab0e9390659d1ed3af authored over 1 year ago by jpfeuffer <[email protected]>

liiiint

728fe4b9d1c8e81f00e31b027c3f3d25284e3aa7 authored over 1 year ago by jpfeuffer <[email protected]>

more lint

eb036a233dbd76809b61beb6d7502be52a9139ff authored over 1 year ago by jpfeuffer <[email protected]>

lint

1c871d09839294eb0fcfc9003476a977bf00c328 authored over 1 year ago by jpfeuffer <[email protected]>

[FEATURE] Glossary warnings

d5db85c63d2eaa3a841858f20c935159f2fe3406 authored over 1 year ago by jpfeuffer <[email protected]>

Merge pull request #330 from OpenMS/jpfeuffer-patch-7

fixes #329

6500275a19c576bcc7857961cff0cdbabac5f4b0 authored over 1 year ago by Julianus Pfeuffer <[email protected]>

fixes #329

4e99878d20af947db898cac6be0486faf73e31d8 authored over 1 year ago by Julianus Pfeuffer <[email protected]>

Merge pull request #325 from matteopilz/master

Updated plotting tutorials and images

232c1e253cdf41f597c1be1fdd234060fad33237 authored over 1 year ago by Julianus Pfeuffer <[email protected]>

added cross-references

0d19d2caa29493b05d030c8f7a0c89513a90cca4 authored over 1 year ago by matteopilz <[email protected]>

Merge remote-tracking branch 'origin/master'

fd793f4a8783cacc6d933edd4b67aa62d4de0528 authored over 1 year ago by matteopilz <[email protected]>

added print outputs

c5faa0d0aacef960e4deabae79f83a663e4d9e09 authored over 1 year ago by matteopilz <[email protected]>

Merge branch 'master' into master

9f38f28b7cb98c5a9c590ecce44fc0aa253aefb9 authored over 1 year ago by Julianus Pfeuffer <[email protected]>

Update .gitpod.yml

565bb139d49906f199a5715ef7a1fe4836a690e4 authored over 1 year ago by Julianus Pfeuffer <[email protected]>

Update .gitpod.yml

e94456593c903b475d3c96af8c4b91f5d3a5aca3 authored over 1 year ago by Julianus Pfeuffer <[email protected]>

use nightly pypi

6a6ba16c5f7515148dac36a8454392b716bfea00 authored over 1 year ago by jpfeuffer <[email protected]>

use nightly pypi

a2cf44fcba7857caafb92b3dd402742cff194f9a authored over 1 year ago by jpfeuffer <[email protected]>

completely wrong gitpod init

608bdc6da041a111baa04068e876657fe0fd8dde authored over 1 year ago by Julianus Pfeuffer <[email protected]>

updated plotting tutorials and images

f59eec9da470288200a5aaa05c66e71f31f20e94 authored over 1 year ago by matteopilz <[email protected]>

updated plotting tutorials and images

9c8a8cf6b1f932cc5b26ea3d95d7a59fc4e02b99 authored over 1 year ago by matteopilz <[email protected]>

Merge remote-tracking branch 'origin/master'

c29a79fa8653afee39e6efb5e1e7e94a2e4b6cb9 authored over 1 year ago by matteopilz <[email protected]>

Merge branch 'OpenMS:master' into master

8d60f807eaaccfc3092c0006409e74647e047c80 authored over 1 year ago by Matteo Pilz <[email protected]>

updated plotting tutorials and images

621f3ca8f457862feb1cab05f94d43738ab67008 authored over 1 year ago by matteopilz <[email protected]>

updated plotting tutorials and images

a438bba49b1ee4adf0a11ca2b7febfd99a96d1f3 authored over 1 year ago by matteopilz <[email protected]>

Merge pull request #319 from greengypsy/new_background

New background

d0f464a9e299afa527a23ab99b2aa88506131eda authored over 1 year ago by Timo Sachsenberg <[email protected]>

Merge remote-tracking branch 'origin/master'

# Conflicts:
# requirements.txt

a3643ead6e80e3dea34f4136f64d1dd536b2ae6b authored over 1 year ago by matteopilz <[email protected]>

edited orbitrap image and added a line about pyopenms specific loading of tooltips style

7bb8fcd1eb1cc96fd2c61549788e8142fac21c58 authored over 1 year ago by greengypsy <[email protected]>

added orbitrap diagram

60242897dafe297ad5ac2f7641322fcebf3ddf3a authored over 1 year ago by greengypsy <[email protected]>

added a full stop to chromatogram definition

8a886961913584c3374ec30a80a42c48044a87cf authored over 1 year ago by greengypsy <[email protected]>

made some minor adjustments to the glossary links

d7f9f86d566929af542abb85398479350ed322de authored over 1 year ago by greengypsy <[email protected]>

tidied up glossary links

16f42432f83aa9b77e0d50fbb7c8418e9f168ab9 authored over 1 year ago by greengypsy <[email protected]>

trying to fix tooltips and sort glossary

fdd569ba07c903c02070b9b9eac084bc048881ca authored over 1 year ago by greengypsy <[email protected]>

fixed images from markdown to rst. Made one adjustment to glossary sorted flag (indentation)

850643379e2b79e414f5e53945127b85f31ccf6f authored over 1 year ago by greengypsy <[email protected]>

trying to render glossary and tooltips

d198bc1a95c7cc948a1fd260c52621f7f81ea56a authored over 1 year ago by greengypsy <[email protected]>

tried to use prefix sphinx to render tooltips

eac27128cf307af3df33ed04c6a6c45fa1bf1415 authored over 1 year ago by greengypsy <[email protected]>

added glossary to index

1a60ecb6afcce3eb32f84c102f6e2b098eb77f49 authored over 1 year ago by greengypsy <[email protected]>

added glossary

0a72b56572e0450a91a7f362c259ab11295df1a8 authored over 1 year ago by greengypsy <[email protected]>

bullet points edited

51e27e2e0a256d39761e95de605113577951e8e2 authored over 1 year ago by greengypsy <[email protected]>

change headings, add admonitions

9ce87816b931eee68ba985d629b7c57f9c50824b authored over 1 year ago by greengypsy <[email protected]>

changed admonition code and fixed image directive

b4a3e5a3752ca82451c44b826058c5b1bba64d13 authored over 1 year ago by greengypsy <[email protected]>

changed css to change appearance of admonitions. Fixed math equation

b1a491a83b2cab7305518ec56fe7c36883b9f301 authored over 1 year ago by greengypsy <[email protected]>

add maths and fix video admonition

0ac0bd919c809c80b28c63a756d2ed6a1f100c08 authored over 1 year ago by greengypsy <[email protected]>

Merge branch 'new_background'

e032a6d89f82e1ed60e5ae5bea8533be0ce76fbf authored over 1 year ago by greengypsy <[email protected]>

updated plotting tutorials and images

1a0ad9828ebb85ab2307aa2bdd084a47ab7f1368 authored over 1 year ago by matteopilz <[email protected]>

updated plotting tutorials and images

db98ede2e1f259da94ea4076944d3b0db3bfdd78 authored over 1 year ago by matteopilz <[email protected]>

Update my.js

f8a75e700f94c7600b2c6b16cd317e02c085a1fa authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

update js libs

bcd4c9f7d5fdb3558bc531aa3eb6e12485b87090 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

update threejs cdns

883337020a368cea2263f3175099d296f906e934 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Update postBuild

fdbc432da00bbb19d384c9bc3ceb79f93497f44b authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

remove integrated submodules from api docs

0b067e255c38010489896c8184e5439ba531fc99 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Update postBuild

ab94f10894fdb9a2a9e61b2c350a95e7a8b1c7d9 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

update theme version

fixes #324

522cf77b0873f2b4d2703ef4121c2d5a7d5d264a authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Merge branch 'new_background' of https://github.com/greengypsy/pyopenms-docs into new_background

84a4c3d0575ba8097c17e80a6796fe24066c227b authored almost 2 years ago by greengypsy <[email protected]>

edited orbitrap image and added a line about pyopenms specific loading of tooltips style

0a8a900bf0337802d967d149a339c1ce5560bab5 authored almost 2 years ago by greengypsy <[email protected]>

Merge pull request #321 from OpenMS/poshul-patch-2

Update test-pr.yaml

3edd489bdf69dc48dfbb6e607b7a4de5cc953edf authored almost 2 years ago by Samuel Wein <[email protected]>

Update flake8 test.yml

Switched to @usama2490's version see: https://github.com/grantmcconnaughey/lintly-flake8-github-...

5802f11b0af770ac22c8c4374c9ae0417f488da1 authored almost 2 years ago by Samuel Wein <[email protected]>

Update test-pr.yaml

2f7937b2bac871cb94331bf8fe6df678b451400d authored almost 2 years ago by Samuel Wein <[email protected]>

Update test-pr.yaml

acb1e00d3ba6d656412c89ad8675a534895f0ff5 authored almost 2 years ago by Samuel Wein <[email protected]>

Update test-pr.yaml

adbfcfe1c73123d0a2d67e29da57bfb0c0a28570 authored almost 2 years ago by Samuel Wein <[email protected]>

Update test-pr.yaml

88ce414ebc1aff2727c5cf972c4822e274b32d07 authored almost 2 years ago by Samuel Wein <[email protected]>

Update test-pr.yaml

afffe4525e8e6f7fa6a6160572265707baa1633f authored almost 2 years ago by Samuel Wein <[email protected]>

Update test-pr.yaml

2507013cde975f120174e9fb2e1a13b453d7f1ba authored almost 2 years ago by Samuel Wein <[email protected]>

Update test-pr.yaml

Limit depth of changed files (so we skip templates)

16e1f7f36a5a11e605863cf1ec090b690360dcd5 authored almost 2 years ago by Samuel Wein <[email protected]>

Update test-pr.yaml

bump changed-files action

85e2084bf2a19d0c08d202b897809d3380e2e9da authored almost 2 years ago by Samuel Wein <[email protected]>

Update README.md

1e5a5df38ae9f05058a68173233621ae0b144a01 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

cleanup non conda files

abfb7a81563bb5825aaa2884de915b7086e859f0 authored almost 2 years ago by Timo Sachsenberg <[email protected]>