OpenMS issues | Ecosyste.ms: OpenCollective

Change figure captions to be numbered automatically

github.com/OpenMS/OpenMS-docs - poshul opened this issue 11 months ago

remove matrix utils. replace OpenMS matrix class with eigen matrix

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request 11 months ago

fix nightly

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request 11 months ago

[DOC] developer documentation update (C++17 etc)

github.com/OpenMS/OpenMS - cbielow opened this pull request 11 months ago

removes need for PSMFeatureExtractor by always adding percolator features

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request 11 months ago

Update executables.cmake

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request 11 months ago

More flexible handling of doxygen warnings

github.com/OpenMS/OpenMS - cbielow opened this pull request 11 months ago

Q: Feature Finder for IMS data?

github.com/OpenMS/OpenMS - jameswallacew8 opened this issue 11 months ago

pyFLASHDeconv

github.com/OpenMS/OpenMS - JKVISION1101 opened this pull request 12 months ago

Update GitHub Actions to Latest Versions in CI Workflow

github.com/OpenMS/OpenMS - poshul opened this pull request 12 months ago

Update seqan_versions.txt

github.com/OpenMS/usage_plots - eseiler opened this pull request 12 months ago

NSIS installer fails with long file paths

github.com/OpenMS/OpenMS - JeeH-K opened this issue 12 months ago

Bump umetaflow-gui from `8440fc3` to `caea94c`

github.com/OpenMS/streamlit-deployment - dependabot[bot] opened this pull request 12 months ago

Bump src/pyOpenMS/pyopenms-docs from `229a171` to `6a0aab2`

github.com/OpenMS/OpenMS - dependabot[bot] opened this pull request 12 months ago

MSstatsConverter does not allow subset of experimental design in input cXML

github.com/OpenMS/OpenMS - jpfeuffer opened this issue 12 months ago

Enhancements in Documentation and Code Readability

github.com/OpenMS/OpenMS - cbielow opened this pull request 12 months ago

Error in Windows packages with latest streamlit 1.30

github.com/OpenMS/streamlit-template - axelwalter opened this issue 12 months ago

folders in build archive no accessible

github.com/OpenMS/OpenMS - saassli21 opened this issue 12 months ago

openMS input files

github.com/OpenMS/pyopenms-docs - saassli21 opened this issue 12 months ago

Bump src/pyOpenMS/pyopenms-docs from `64016e7` to `229a171`

github.com/OpenMS/OpenMS - dependabot[bot] opened this pull request 12 months ago

Comet scores duplicated

github.com/OpenMS/OpenMS - jpfeuffer opened this issue 12 months ago

nightly merge action fails

github.com/OpenMS/OpenMS - timosachsenberg opened this issue 12 months ago

removed application backup file because it triggered errors

github.com/OpenMS/OpenMS-website - timosachsenberg opened this pull request 12 months ago

Enhancements and code simplifications in various files

github.com/OpenMS/OpenMS - jpfeuffer opened this pull request 12 months ago

Create devmeeting2024.md

github.com/OpenMS/OpenMS-website - tjeerdijk opened this pull request 12 months ago

Update update_nightly.yml

github.com/OpenMS/OpenMS - poshul opened this pull request 12 months ago

Add action to replace Jenkins at updating the nightly branch every night

github.com/OpenMS/OpenMS - poshul opened this pull request 12 months ago

fix compiler issue

github.com/OpenMS/OpenMS - poshul opened this pull request 12 months ago

Bump umetaflow-gui from `8440fc3` to `670385a`

github.com/OpenMS/streamlit-deployment - dependabot[bot] opened this pull request 12 months ago

Create codium-pr-agent

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request 12 months ago

Bump readthedocs-sphinx-search from 0.3.1 to 0.3.2 in /docs

github.com/OpenMS/pyopenms-docs - dependabot[bot] opened this pull request 12 months ago

Migrate Dockerfiles from external repository

github.com/OpenMS/OpenMS - radusuciu opened this pull request 12 months ago

Update README

github.com/OpenMS/OpenMS - poshul opened this pull request 12 months ago

mgf file from single mzML files

github.com/OpenMS/OpenMS - YasinEl opened this issue 12 months ago

OpenSwathWorkflow - swath_windows_file type not restricted!

github.com/OpenMS/OpenMS - bruadi opened this issue 12 months ago

[FEATURE] Simple, targeted, fast IsobaricWorkflow

github.com/OpenMS/OpenMS - jpfeuffer opened this pull request 12 months ago

[Feature] Loading XML from remote locations

github.com/OpenMS/OpenMS - jpfeuffer opened this pull request 12 months ago

Enhancements in MSExperiment and MSSpectrum classes

github.com/OpenMS/OpenMS - jpfeuffer opened this pull request 12 months ago

Enhancements in Documentation and Code Readability

github.com/OpenMS/OpenMS - cbielow opened this pull request 12 months ago

Linux build instructions could be simplified.

github.com/OpenMS/OpenMS - timosachsenberg opened this issue 12 months ago

Bump FLASHViewer from `e788ee0` to `c3c3e6f`

github.com/OpenMS/streamlit-deployment - dependabot[bot] opened this pull request 12 months ago

Bump src/pyOpenMS/pyopenms-docs from `64016e7` to `27dfc2a`

github.com/OpenMS/OpenMS - dependabot[bot] opened this pull request 12 months ago

Optimize Dockerfiles

github.com/OpenMS/dockerfiles - radusuciu opened this pull request 12 months ago

Optimize Dockerfile

github.com/OpenMS/contrib - radusuciu opened this pull request 12 months ago

Add FLASHViewer submodule and service

github.com/OpenMS/streamlit-deployment - JeeH-K opened this pull request 12 months ago

Investigate building snap/flatpak packages for linux

github.com/OpenMS/OpenMS - poshul opened this issue 12 months ago

Fix developer docs and warnings

github.com/OpenMS/OpenMS - cbielow opened this pull request 12 months ago

Fix Windows installer's extra Dll's from GHA

github.com/OpenMS/OpenMS - cbielow opened this issue 12 months ago

Where is MSSimulator?

github.com/OpenMS/OpenMS - Ministreliya131 opened this issue 12 months ago

OpenMS File archive not working

github.com/OpenMS/OpenMS - jpfeuffer opened this issue 12 months ago

How to write cython code of struct in struct in the type declaration.

github.com/OpenMS/OpenMS - JKVISION1101 opened this issue 12 months ago

License header

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request 12 months ago

when cythonize, No such file or directory error (wrapping class for pyopenms)

github.com/OpenMS/OpenMS - JKVISION1101 opened this issue almost 1 year ago

Parameter ms1_isotopes ignored

github.com/OpenMS/OpenMS - cbielow opened this issue almost 1 year ago

When making pxd file for wrapping class, question about cimport.

github.com/OpenMS/OpenMS - JKVISION1101 opened this issue almost 1 year ago

Always set working dir in pyopenms tests

github.com/OpenMS/OpenMS - jpfeuffer opened this pull request about 1 year ago

After building pyopenms, ctest failed, although importing pyopenms worked well,

github.com/OpenMS/OpenMS - JKVISION1101 opened this issue about 1 year ago

deisotopeAndSingleCharge: Removes Highest Intensity Peaks, bug?

github.com/OpenMS/OpenMS - CCranney opened this issue about 1 year ago

Bump tj-actions/changed-files from 34.6.1 to 41.0.0 in /.github/workflows

github.com/OpenMS/OpenMS - dependabot[bot] opened this pull request about 1 year ago

Bump tj-actions/changed-files from 35 to 41 in /.github/workflows

github.com/OpenMS/pyopenms-docs - dependabot[bot] opened this pull request about 1 year ago

[ByGitAction] Updated year number in the header of files

github.com/OpenMS/OpenMS - github-actions[bot] opened this pull request about 1 year ago

Bump umetaflow-gui from `050e0ec` to `8440fc3`

github.com/OpenMS/streamlit-deployment - dependabot[bot] opened this pull request about 1 year ago

cmake cleanup

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request about 1 year ago

Is there an elegant way to present the ProteomicsLFQ results?

github.com/OpenMS/OpenMS - liuxiawei opened this issue about 1 year ago

Bump umetaflow-gui from `3eb18e2` to `050e0ec`

github.com/OpenMS/streamlit-deployment - dependabot[bot] opened this pull request about 1 year ago

Bump umetaflow-gui from `3eb18e2` to `5d5071e`

github.com/OpenMS/streamlit-deployment - dependabot[bot] opened this pull request about 1 year ago

fix: remove CWL CI and pregenerated tool description files

github.com/OpenMS/OpenMS - SGSSGene opened this pull request about 1 year ago

Allow different sizes of compressed output in zlib unit tests

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request about 1 year ago

Bump umetaflow-gui from `3eb18e2` to `2aa4dc5`

github.com/OpenMS/streamlit-deployment - dependabot[bot] opened this pull request about 1 year ago

Update plotting tutorials

github.com/OpenMS/pyopenms-docs - matteopilz opened this pull request about 1 year ago

Display proper exit code when external process crashes

github.com/OpenMS/OpenMS - cbielow opened this pull request about 1 year ago

[FEATURE] Concurrent MSGF+ database indexing

github.com/OpenMS/OpenMS - cbielow opened this pull request about 1 year ago

7 tests fail when using zlib-ng

github.com/OpenMS/OpenMS - tuliom opened this issue about 1 year ago

Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - poshul opened this pull request about 1 year ago

Bump umetaflow-gui from `6cc740f` to `3eb18e2`

github.com/OpenMS/streamlit-deployment - dependabot[bot] opened this pull request about 1 year ago

Bump brew python to 3.12

github.com/OpenMS/OpenMS - poshul opened this pull request about 1 year ago

[NOP] renamed "thirdparty" folder to the more common "extern"

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request about 1 year ago

Bump contrib from `69e61f2` to `5e42765`

github.com/OpenMS/OpenMS - dependabot[bot] opened this pull request about 1 year ago

Spectramerger sprint

github.com/OpenMS/pyopenms-docs - KyowonJeong opened this pull request about 1 year ago

Delete cmake/Modules/FindHDF5.cmake

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request about 1 year ago

Generate __str__ and __repr__

github.com/OpenMS/autowrap - timosachsenberg opened this issue about 1 year ago

add __repr__

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request about 1 year ago

Bump src/pyOpenMS/pyopenms-docs from `64016e7` to `bb095b8`

github.com/OpenMS/OpenMS - dependabot[bot] opened this pull request about 1 year ago

Aligning Parameters/ New SpectrumGenerator

github.com/OpenMS/OpenMS - Trapho opened this pull request about 1 year ago

support tools with multiple headers and cpp files

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request about 1 year ago

Rewrite generation of _get_item_

github.com/OpenMS/autowrap - jpfeuffer opened this issue about 1 year ago

Move CWL outputs to own build subfolder

github.com/OpenMS/OpenMS - jpfeuffer opened this issue about 1 year ago

removed reference to isotopewavelet

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this pull request about 1 year ago

Removed email signup field in the footer

github.com/OpenMS/OpenMS-website - enetz opened this pull request about 1 year ago

Replaced outdated OpenMS logo

github.com/OpenMS/OpenMS-website - enetz opened this pull request about 1 year ago

Error report in XTandemAdapter, IDScoreSwitcher, and ProteomicsLFQ

github.com/OpenMS/OpenMS - liuxiawei opened this issue about 1 year ago

Added link to FLASHQuant installer files

github.com/OpenMS/OpenMS-website - JeeH-K opened this pull request about 1 year ago

add wrap-return-self to change default behavior from returning a copy to a reference

github.com/OpenMS/autowrap - timosachsenberg opened this issue about 1 year ago

Add conversion for MSSpectrum & PeptideHit to spectrum_utils MsmsSpectrum

github.com/OpenMS/OpenMS - matteopilz opened this pull request about 1 year ago

Update TOPPAS tutorial

github.com/OpenMS/OpenMS - cbielow opened this pull request about 1 year ago

Run example TOPPAS workflows with CI

github.com/OpenMS/OpenMS - cbielow opened this issue about 1 year ago

our example mzML files could use an update

github.com/OpenMS/OpenMS - cbielow opened this issue about 1 year ago

Running MSGF+ in parallel crashes when input DB is new

github.com/OpenMS/OpenMS - cbielow opened this issue about 1 year ago

TOPPView: Running TOPP tools fails

github.com/OpenMS/OpenMS - cbielow opened this issue about 1 year ago

fix warning in traml handler

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request about 1 year ago