Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

OpenMS

Make mass spectrometry analysis accessible to anyone
Collective - Host: opensource - https://opencollective.com/openms - Website: https://openms.org - Code: https://github.com/openms

Update StreamlitUI.py

moved check if input files are in list to correct position

github.com/OpenMS/streamlit-template - 914b702d6db520ba26db53f71d1509503724a2a0 authored 8 months ago by axelwalter <[email protected]>
Update README.MD

github.com/OpenMS/Tutorials - 6da32b03b7b6c3f7e15831f4d1188e0890a16200 authored 8 months ago by Samuel Wein <[email protected]>
another attempt to get a svg file that git likes

github.com/OpenMS/images - 171b01fc6182f2f4966f5102a175df5797923a0b authored 8 months ago by Samuel Wein <[email protected]>
fix source name

github.com/OpenMS/images - 42576a638752326257889f2744179ecb768b3596 authored 8 months ago by Samuel Wein <[email protected]>
add a modern version of the "Powered by OpenMS" logo

github.com/OpenMS/images - e0ecb206764cb0ea205a05f80c706184c99226cd authored 8 months ago by Samuel Wein <[email protected]>
Replace SVG logo using shapes for the letters with one that uses the actual font

github.com/OpenMS/images - d7a16f824272efec9b49f065454b82c5fc6d4167 authored 8 months ago by Samuel Wein <[email protected]>
Update README.md

Explain font usage for log

github.com/OpenMS/images - f9ce9c045d9715b9cc84c09afd5969e9f1929d87 authored 8 months ago by Samuel Wein <[email protected]>
split pyopenms logo into actually useful separate logos

github.com/OpenMS/images - 4be4d8dfa535007eecf8774f5d514f4bcb050093 authored 8 months ago by Julianus Pfeuffer <[email protected]>
Merge pull request #7377 from OpenMS/timosachsenberg-patch-1

attempt to install eigen from chocolatey

github.com/OpenMS/OpenMS - f7db2cf380a5fbd29958321a4fe1e90750078296 authored 8 months ago by Timo Sachsenberg <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - c5ce169da553d72fcbbb371d50e9bc0cc3dbeb39 authored 8 months ago by Timo Sachsenberg <[email protected]>
attempt to install eigen from chocolatey

github.com/OpenMS/OpenMS - 66042b3bbdd8b4053c9023ba75238733af24386e authored 8 months ago by Timo Sachsenberg <[email protected]>
Merge pull request #7371 from OpenMS/dependabot/submodules/contrib-5545518

Bump contrib from `04d64c6` to `5545518`

github.com/OpenMS/OpenMS - 50721ed4dd8241c06f00a7e34f3138326c70503a authored 8 months ago by Timo Sachsenberg <[email protected]>
Remove duplicated tutorial (#226)

* fix broken links

* fix broken links

* relink developer quickstart guide

* update TOPP...

github.com/OpenMS/OpenMS-docs - 8f1c156d6a6539689f8dd1255f16058e815b0864 authored 8 months ago by Matteo Pilz <[email protected]>
Make introduction_lc.png a more reasonable size

github.com/OpenMS/OpenMS-docs - 81d2a3f127a3437541de7a6ddf64dc49d8530054 authored 8 months ago by Samuel Wein <[email protected]>
Updated PepConsensusId.png

github.com/OpenMS/OpenMS-docs - 878002c4587c18fd7275c0ca4bec1756ee36e8d3 authored 8 months ago by Samuel Wein <[email protected]>
Update OpenMS logo

github.com/OpenMS/OpenMS-docs - 5e0e594df960bea87d1bded1c73c0fea73b6c041 authored 8 months ago by Samuel Wein <[email protected]>
Merge pull request #7376 from OpenMS/timosachsenberg-patch-1

Update MatrixUtils.h with correct(?) eigen include path

github.com/OpenMS/OpenMS - 332d548f8065d5b260baab653c6ea7384178e36b authored 8 months ago by Timo Sachsenberg <[email protected]>
check if CI caching is involved...

github.com/OpenMS/OpenMS - 4f33fa521a0df4a11329b36067be99fa9621f535 authored 8 months ago by Timo Sachsenberg <[email protected]>
Update MatrixUtils.h

github.com/OpenMS/OpenMS - 59ffed315c2ee3799d1f34defe2e83da63d08a44 authored 8 months ago by Timo Sachsenberg <[email protected]>
new images

github.com/OpenMS/OpenMS-docs - 8e1d60a314dfc432f450344a6dac19857167edee authored 8 months ago by Samuel Wein <[email protected]>
Update iPRG_lfq with non-transparent background

github.com/OpenMS/OpenMS-docs - 1b79648ae1696738f42f58a4f9a5e6874dac8c70 authored 8 months ago by Samuel Wein <[email protected]>
fix upload file error in online mode

github.com/OpenMS/streamlit-template - 5809ed54406a541d37646fbb2581b9347b1745a3 authored 8 months ago by axelwalter <[email protected]>
Dockerfile for template

User Dockerfile instead of Dockerfile_simple for the streamlit template. Required to run the wor...

github.com/OpenMS/streamlit-deployment - ba8685602f7213763544485e9375b132e86dd0ab authored 8 months ago by axelwalter <[email protected]>
Merge pull request #41 from axelwalter/main

Framework for TOPP tool workflows

github.com/OpenMS/streamlit-template - 2490777a6cd860bdb0135af4221adb3eb51cf70c authored 8 months ago by axelwalter <[email protected]>
Update KNIME Tutorial (#225)

* fix broken links

* fix broken links

* relink developer quickstart guide

* update TOPP...

github.com/OpenMS/OpenMS-docs - a5f784d5e82ed1e02f70b1ee429e22a8582d85ac authored 8 months ago by Matteo Pilz <[email protected]>
Added missing workflows. Updated existing workflows to not use deprecated nodes (for the most part)

github.com/OpenMS/Tutorials - e88af2e354bb92d0bf14230846fb75cc0db488b6 authored 8 months ago by Samuel Wein <[email protected]>
Prune dead links (#224)

* Update tutorial.md

* Update tutorial.md

* Update openms-user-tutorial.md

* Update tut...

github.com/OpenMS/OpenMS-docs - b26767ba4812301fd88250b371c8d82afbe5820a authored 8 months ago by Samuel Wein <[email protected]>
pylint errors

github.com/OpenMS/streamlit-template - 59a05d27f3f8c9de1973114c445ad6580f407605 authored 8 months ago by axelwalter <[email protected]>
remove streamlit from all workflow classes except for StreamlitUI, rework Files to FileManager

github.com/OpenMS/streamlit-template - b6030e887ecba5325b7e5aed5685d653aa426312 authored 8 months ago by axelwalter <[email protected]>
Bump contrib from `04d64c6` to `5545518`

Bumps [contrib](https://github.com/OpenMS/contrib) from `04d64c6` to `5545518`.
- [Commits](http...

github.com/OpenMS/OpenMS - 02019d3f938d33367c4ac4c067e4ea449b590909 authored 8 months ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
address review comments by JeeH-K

github.com/OpenMS/streamlit-template - 7c939da4e6caf0ef560669ca922db0aa9567842b authored 8 months ago by axelwalter <[email protected]>
make workflow-dir available as st.session_state for Files

github.com/OpenMS/streamlit-template - 3643a7f35f61a9425f81fef8c1574cc30b485de7 authored 8 months ago by axelwalter <[email protected]>
improve commment on process ids

github.com/OpenMS/streamlit-template - af54b2f3efae2475613378b848d13a1a7429791c authored 8 months ago by axelwalter <[email protected]>
reducing dendency on session_state

- workflow-dir is determined once from workspace session_state in WorkflowManager and passed on
-...

github.com/OpenMS/streamlit-template - 9fd5bfcd2de4c9311ed37a832efb0df7cea95fb5 authored 8 months ago by axelwalter <[email protected]>
Files collect method replaces combine and flatten

github.com/OpenMS/streamlit-template - d39f52e6d35ca6574ebc24f9013705d5ee5c6c4a authored 8 months ago by axelwalter <[email protected]>
Merge pull request #7210 from OpenMS/release/2.9.1-action

Release action

github.com/OpenMS/OpenMS - 26b6bfa84993a9db05f131a809a42b70cbb49c8c authored 8 months ago by Julianus Pfeuffer <[email protected]>
custom Python tools functionality

github.com/OpenMS/streamlit-template - 8da3398271c9eeba57a684f326ec86ad3c9a7d1b authored 8 months ago by axelwalter <[email protected]>
remove DO NOT MERGE from release PR text.

github.com/OpenMS/OpenMS - 5f20c8c559634161a0c82751fe9687286b663c4f authored 8 months ago by Samuel Wein <[email protected]>
allow trailing text in release versions

github.com/OpenMS/OpenMS - b5775aca2640ef7b6ffd623a36c89f07558f7905 authored 8 months ago by Samuel Wein <[email protected]>
update knime version to 5.2

github.com/OpenMS/OpenMS - 611911cf07a119a92e0fd0e7df41ca89f60d226d authored 8 months ago by Samuel Wein <[email protected]>
Merge branch 'develop' into release/2.9.1-action

github.com/OpenMS/OpenMS - 297c1793a2f0bc56ade55a97d5dbd32280e1b206 authored 8 months ago by Samuel Wein <[email protected]>
Merge pull request #7354 from cbielow/more_doc

[DOC] update C++ developer tutorials {part1)

github.com/OpenMS/OpenMS - ec467516de3e0e75d132d8f8f3348bac939cf4cd authored 8 months ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into release/2.9.1-action

github.com/OpenMS/OpenMS - 99cb6baa02e33332fd97164d8fe3844e0ccf0cd3 authored 8 months ago by Samuel Wein <[email protected]>
redirect the upload paths to where they should live post-testing

github.com/OpenMS/OpenMS - 3dc1af474148713a8536396756d95d866ef57a00 authored 8 months ago by Samuel Wein <[email protected]>
fix doxygen formatting issue

github.com/OpenMS/OpenMS - 82c523a5f397a0304ca9213b0dbf7cae437ab9f6 authored 8 months ago by Chris Bielow <[email protected]>
fixed links for latest

github.com/OpenMS/OpenMS - eacc9169aacf216e58294f5f98d997c097af9008 authored 8 months ago by Samuel Wein <[email protected]>
fix paths and variables for uploading.

github.com/OpenMS/OpenMS - cbfa72e0eea35a25966854d23d9f3e1b345adfb4 authored 8 months ago by Samuel Wein <[email protected]>
fixed evaluation of nightly status for where to upload

github.com/OpenMS/OpenMS - 7941ae476b2e9901ee6bdeff23a9eaf02b6d9b7e authored 8 months ago by Samuel Wein <[email protected]>
fix invalid file name

github.com/OpenMS/streamlit-template - a50afb2c51de588173cea4abed7b44c9eb787ebb authored 8 months ago by axelwalter <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into more_doc

github.com/OpenMS/OpenMS - 4f538f8b670dccac490a1d0692837688de66b937 authored 8 months ago by Chris Bielow <[email protected]>
Merge branch 'more_doc' of https://github.com/cbielow/OpenMS into more_doc

github.com/OpenMS/OpenMS - a48194de232e2371474bba8592b92f6f8adeb710 authored 8 months ago by Chris Bielow <[email protected]>
fix typo

github.com/OpenMS/OpenMS - 089007c36523594bc6f24edd200f8bd8a2423a1b authored 8 months ago by Chris Bielow <[email protected]>
we used env.run_name in a lot of places where we should have used github.ref_name, they are the same when run automatically, but not when run manually

github.com/OpenMS/OpenMS - eb08cd5a4553491f903cab5efeebbab3d30b3390 authored 8 months ago by Samuel Wein <[email protected]>
Update src/openms/include/OpenMS/DATASTRUCTURES/DistanceMatrix.h

github.com/OpenMS/OpenMS - 9261109b740d559ba5157bce1cef1a194bc02b33 authored 8 months ago by Timo Sachsenberg <[email protected]>
fix base64 wrapping

github.com/OpenMS/OpenMS - 992217671de087c7e99a0700f8d3346d023ba18e authored 8 months ago by Samuel Wein <[email protected]>
base64 encode relesae announcement so it doesn't get mangled

github.com/OpenMS/OpenMS - da1f58334530977a03ac5028602b5b1d6e79c3fb authored 8 months ago by Samuel Wein <[email protected]>
SiriusAdapter replaced with SiriusExport and adaptations to AssayGeneratorMetabo (#7234)

* rework SiriusAdapter to SiriusExport

* AssayGeneratorMetabo rework
- does not execute SIRI...

github.com/OpenMS/OpenMS - 7ffeae56012101ee77a37fb26a7dc7e11b84a26e authored 8 months ago by axelwalter <[email protected]>
remove files from params on deletion

github.com/OpenMS/streamlit-template - 813cd3594751a6b20209e9a237f38304c31309c7 authored 8 months ago by axelwalter <[email protected]>
Merge branch 'develop' into more_doc

github.com/OpenMS/OpenMS - ef2c1d26f640c955af806b84845ba1014703a1ac authored 8 months ago by Timo Sachsenberg <[email protected]>
add tutorial page

github.com/OpenMS/streamlit-template - 387b308aeb22759f2dd762ad06f706aecea98da6 authored 8 months ago by axelwalter <[email protected]>
Correct order to use token at checkout

github.com/OpenMS/OpenMS - 381434fe015eada970ace71ffaca3b2352100b16 authored 8 months ago by Julianus Pfeuffer <[email protected]>
create token for website

github.com/OpenMS/OpenMS - 04dcbf14a57ed2f026f2781fe864230fb4a63204 authored 8 months ago by Samuel Wein <[email protected]>
moved the website update to another job

github.com/OpenMS/OpenMS - 712e8b8a9508a6f23e27f7dc81da88cf637c60b3 authored 8 months ago by Samuel Wein <[email protected]>
add user.email and user.name

github.com/OpenMS/OpenMS - ed888ad29793124bc9ca8bfe33e8153e0ecd10cf authored 8 months ago by Samuel Wein <[email protected]>
Merge branch 'release/2.9.1-action' of ssh://github.com/OpenMS/OpenMS into release/2.9.1-action

github.com/OpenMS/OpenMS - c9c131dcf8dfde223469128e5f51d6961b8065fe authored 8 months ago by Samuel Wein <[email protected]>
Merge remote-tracking branch 'upstream/develop' into release/2.9.1-action

github.com/OpenMS/OpenMS - 20befdb16b3687d54420dc9fbda62d52f39ca1a6 authored 8 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - 5dbdfa2dbcbb1e27102bcee5ee122370718fe501 authored 8 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - 42ceb92371d5c33a587407ea98b2952068dd928b authored 8 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

If there was any documentation as to what directory exclusions were relative to it would make th...

github.com/OpenMS/OpenMS - 7feb640da2dd5168bb561cb46fbace9c1092e427 authored 8 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - 87299cf3202c4aff8aac5bf62f299f3299d42fae authored 8 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - 4bd8c01487d330c66dbbfe3a3141628f0d412961 authored 8 months ago by Samuel Wein <[email protected]>
Merge pull request #7355 from OpenMS/jpfeuffer-patch-6

Add KNIME package support for macos arm

github.com/OpenMS/OpenMS - 37b878b5b52a01dbf6a9502152ec6f7a65f12708 authored 8 months ago by Julianus Pfeuffer <[email protected]>
Merge pull request #7352 from OpenMS/nightly-testing

Update update_nightly.yml testing

github.com/OpenMS/OpenMS - 7af995ffa4393b0f7642af85938ca3639d5c1217 authored 8 months ago by Julianus Pfeuffer <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - 579940aff2700645a3bb3c3e6ee7be6c9735b61c authored 8 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

actually upload the artifact

github.com/OpenMS/OpenMS - 7cc77a9536c8825721247fe6a99986e91e5ecbce authored 8 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - dd63213e630a24bef68e3e8b666f90e7deac0d7e authored 8 months ago by Samuel Wein <[email protected]>
fixed (hopefully)

github.com/OpenMS/OpenMS - 9524bb9045ba9d28091fa1a9ffe5aa64bc586213 authored 8 months ago by Samuel Wein <[email protected]>
added creating a src archive and uploading it as part of the release

github.com/OpenMS/OpenMS - 27c5ff2494b7c43809405aceab0cbd8f8b70e34b authored 8 months ago by Samuel Wein <[email protected]>
fix incorrectly escaped naming for upload artifact

github.com/OpenMS/OpenMS - 7251f47136d6474926457159d1f983d6c16a108e authored 8 months ago by Samuel Wein <[email protected]>
tidy

github.com/OpenMS/OpenMS - dce3b52d249967d8308f5399596b9d2c9f2fc6a7 authored 8 months ago by Samuel Wein <[email protected]>
Merge remote-tracking branch 'upstream/develop' into release/2.9.1-action

github.com/OpenMS/OpenMS - eedced5ba2c7097f37022cce12e67b0208e53453 authored 8 months ago by Samuel Wein <[email protected]>
remove upload-url stuff

github.com/OpenMS/OpenMS - d638d894844c156f15c1d24e981a3b88f9292b88 authored 8 months ago by Samuel Wein <[email protected]>
Merge branch 'develop' into nightly-testing

github.com/OpenMS/OpenMS - b17f1932f0ecef24e5710e15d33ad25f5f1c4cea authored 8 months ago by Samuel Wein <[email protected]>
Merge pull request #7348 from OpenMS/jpfeuffer-patch-9

Add Apple Silicon support to CI

github.com/OpenMS/OpenMS - 911269902ed29ea70bd1ccabf84a04f6f2c06a9f authored 8 months ago by Julianus Pfeuffer <[email protected]>
Add KNIME pacakge support for arm

github.com/OpenMS/OpenMS - 988991f19b5c5da6f49cd52a02d036dfdb8388c9 authored 8 months ago by Julianus Pfeuffer <[email protected]>
[DOC] modernize first set of Tutorials; fix docs of affected classes along the way. also update raw input data (avoid parser warnings)

github.com/OpenMS/OpenMS - 4be904ed50e814262b3a16a06c11675a98849b7f authored 8 months ago by Chris Bielow <[email protected]>
actually define outputs

github.com/OpenMS/OpenMS - fb75a43ef3569ac713e5445c0b79e6dbb869795c authored 8 months ago by Samuel Wein <[email protected]>
Update .github/workflows/update_nightly.yml

Co-authored-by: Timo Sachsenberg <[email protected]>

github.com/OpenMS/OpenMS - 7736cb7a8b25ea4173f645eb539f53c34f259f44 authored 8 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - f94d899aa752b0d97cfcfda136608d1456cd8da0 authored 8 months ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into nightly-testing

github.com/OpenMS/OpenMS - 0de1bcd2d261f6c3d1e07af912243ac8e8e6173c authored 8 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - 536874b986a3fccda0937af431851d25db4ffc7c authored 8 months ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into jpfeuffer-patch-9

github.com/OpenMS/OpenMS - 42d66d35408e23ea4b836161a1ba040a13cd0daa authored 8 months ago by Julianus Pfeuffer <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - 6238414264e1e2ce46c2cea2fba71814f45f8323 authored 8 months ago by Julianus Pfeuffer <[email protected]>
Exclude some tests on mac for MRMAssay_test.cpp (#7349)

* Update MRMAssay_test.cpp

* add comments, fix logic

github.com/OpenMS/OpenMS - 39575d2142d0f49098019c80dc6cfbfed9f76f76 authored 8 months ago by Timo Sachsenberg <[email protected]>
Update update_nightly.yml

github.com/OpenMS/OpenMS - 4b5220d0c12cea2a7db40ad892c55c66980d6603 authored 8 months ago by Samuel Wein <[email protected]>
Update update_nightly.yml

github.com/OpenMS/OpenMS - aea1f1fdc71d2d38e813788a760c7f58ade5a8b5 authored 8 months ago by Samuel Wein <[email protected]>
Update update_nightly.yml

github.com/OpenMS/OpenMS - 1ede9ac47fbfad1b880b4a53933375a781d82d13 authored 8 months ago by Samuel Wein <[email protected]>
Update update_nightly.yml

github.com/OpenMS/OpenMS - b5ad4a68f0c92da44d431659b56412f16cf13aba authored 8 months ago by Samuel Wein <[email protected]>
Update update_nightly.yml

github.com/OpenMS/OpenMS - 8affedcaed27af5fbdc128c392a940ec3a03e7a6 authored 8 months ago by Samuel Wein <[email protected]>
Update update_nightly.yml

github.com/OpenMS/OpenMS - 7dfa869ec52eab70575569595f577e9feb96bd4f authored 8 months ago by Samuel Wein <[email protected]>