OpenMS issues | Ecosyste.ms: OpenCollective

Fast base64 encoding

github.com/OpenMS/OpenMS - hroest opened this issue over 7 years ago

X!Tandem version

github.com/OpenMS/THIRDPARTY - mwalzer opened this issue over 7 years ago

[FEATURE] Added redists for pwiz here.

github.com/OpenMS/THIRDPARTY - jpfeuffer opened this pull request over 7 years ago

Invalid mzIdentML created from idXML with missing proteins

github.com/OpenMS/OpenMS - hendrikweisser opened this issue over 7 years ago

Storage of tool index files (MSGFPlus)

github.com/OpenMS/de.openms.knime - timosachsenberg opened this issue over 7 years ago

IDTextReader can not handle arbitrary Metavalue columns

github.com/OpenMS/de.openms.knime - jpfeuffer opened this issue over 7 years ago

[Dependencies] for jMzML. git ignored them

github.com/OpenMS/de.openms.knime - jpfeuffer opened this pull request over 7 years ago

Added missing .project file. Made knime version not so strict.

github.com/OpenMS/de.openms.knime - jpfeuffer opened this pull request over 7 years ago

Error: "Plugin not found, cannot call UAC::ExecCodeSegment"

github.com/OpenMS/windows-installer - TDI-tenderholt opened this issue over 7 years ago

Error handling spaces in paths in the course of a workflow

github.com/OpenMS/OpenMS - jpfeuffer opened this issue over 7 years ago

Added mzML Demanglers from @alexanderfillbrunn.

github.com/OpenMS/de.openms.knime - jpfeuffer opened this pull request over 7 years ago

[TEST] Jenkins

github.com/OpenMS/contrib - jpfeuffer opened this pull request over 7 years ago

[BUILD] Testing exclusion of filtered Jenkins combinations

github.com/OpenMS/contrib - jpfeuffer opened this pull request over 7 years ago

[FEATURE] SQLite

github.com/OpenMS/contrib - grosenberger opened this pull request over 7 years ago

Better explain settings of Joiner node in Metabo WF

github.com/OpenMS/Tutorials - jpfeuffer opened this issue almost 8 years ago

[Feature] Add update site feature

github.com/OpenMS/de.openms.knime - jpfeuffer opened this pull request almost 8 years ago

Upgrade libsvm to newer version

github.com/OpenMS/contrib - jpfeuffer opened this issue almost 8 years ago

Updated MSGFPlus version to v2017.01.13

github.com/OpenMS/THIRDPARTY - jpfeuffer opened this pull request almost 8 years ago

Write a node to read and display available modifications

github.com/OpenMS/de.openms.knime - jpfeuffer opened this issue almost 8 years ago

[ADD] SpectraST executable from TPP and README

github.com/OpenMS/THIRDPARTY - lukaszimmermann opened this pull request almost 8 years ago

[ADD] Executable and Makefile of SpectraST

github.com/OpenMS/THIRDPARTY - lukaszimmermann opened this pull request almost 8 years ago

LFQProfiler crash

github.com/OpenMS/PDCommunityNodes - lars20070 opened this issue about 8 years ago

sync of master with develop for OpenMS 2.1.0 release

github.com/OpenMS/de.openms.knime - timosachsenberg opened this pull request about 8 years ago

Updated SHA1 for Xerces after addition of VS15 Slns

github.com/OpenMS/contrib - jpfeuffer opened this pull request about 8 years ago

Introduce tags and use in CI

github.com/OpenMS/contrib - timosachsenberg opened this issue about 8 years ago

Do we still need to support building GSL?

github.com/OpenMS/contrib - jpfeuffer opened this issue about 8 years ago

changed 32bit tandem to old, working version Sledgehammer

github.com/OpenMS/THIRDPARTY - FabianAicheler opened this pull request about 8 years ago

Update package_test.cmake

github.com/OpenMS/build-scripts - jpfeuffer opened this pull request about 8 years ago

Update run_tests.cmake

github.com/OpenMS/build-scripts - jpfeuffer opened this pull request about 8 years ago

Update test_config.cmake.template

github.com/OpenMS/build-scripts - jpfeuffer opened this pull request about 8 years ago

Run your pipeline and inspect your results... on p.30

github.com/OpenMS/Tutorials - timosachsenberg opened this issue about 8 years ago

[FIX] fixes installation of thirdparty path variables

github.com/OpenMS/windows-installer - jpfeuffer opened this pull request over 8 years ago

deprecate SmallMoleculeMzTabReader node

github.com/OpenMS/de.openms.knime - timosachsenberg opened this issue over 8 years ago

Font face and size

github.com/OpenMS/windows-installer - jpfeuffer opened this pull request over 8 years ago

[FIX] added vcredist2012 for pwiz

github.com/OpenMS/windows-installer - timosachsenberg opened this pull request over 8 years ago

Thirdparty binaries are incorrectly installed

github.com/OpenMS/windows-installer - timosachsenberg opened this issue over 8 years ago

Added a fallback Fido executable from Ubuntu14.04

github.com/OpenMS/THIRDPARTY - jpfeuffer opened this pull request over 8 years ago

Added Redistributables for VS2015. Updated 2012 and 2013.

github.com/OpenMS/windows-installer - jpfeuffer opened this pull request over 8 years ago

Makes use of a flattened folder structure for the THIRDPARTY binaries.

github.com/OpenMS/windows-installer - jpfeuffer opened this pull request over 8 years ago

[INSTALLER] Removed thirdparties from here

github.com/OpenMS/windows-installer - jpfeuffer opened this pull request over 8 years ago

IDTextReader has problems reading "null" as values.

github.com/OpenMS/de.openms.knime - jpfeuffer opened this issue over 8 years ago

Look at C++ Package managers

github.com/OpenMS/contrib - hroest opened this issue over 8 years ago

Installation process of Thirdparty binaries

github.com/OpenMS/windows-installer - jpfeuffer opened this issue over 8 years ago

[WIN] Boost always uses VC11 toolset

github.com/OpenMS/contrib - jpfeuffer opened this issue over 8 years ago

eigen does not build with VS2010 generator

github.com/OpenMS/contrib - hroest opened this issue over 8 years ago

CoinOR upgrade

github.com/OpenMS/contrib - jpfeuffer opened this issue over 8 years ago

Libraries missing on Win7 / MSVS 2008

github.com/OpenMS/contrib - hroest opened this issue over 8 years ago

RNPxl: also use PD-style protein accession formatting

github.com/OpenMS/PDCommunityNodes - hannesveit opened this issue over 8 years ago

RNPxl node: allow multiple FASTA files

github.com/OpenMS/PDCommunityNodes - hannesveit opened this issue over 8 years ago

Merge OpenMS/windows-installer/thirdparty to here

github.com/OpenMS/THIRDPARTY - jpfeuffer opened this issue over 8 years ago

Update binaries

github.com/OpenMS/THIRDPARTY - jpfeuffer opened this issue over 8 years ago

Protein accession strings not consistent

github.com/OpenMS/PDCommunityNodes - hannesveit opened this issue over 8 years ago

LFQProfiler: link quantification results to associated spectra

github.com/OpenMS/PDCommunityNodes - hannesveit opened this issue over 8 years ago

LFQProfiler: Transfer FASTA databases from processing workflow to consensus workflow

github.com/OpenMS/PDCommunityNodes - hannesveit opened this issue over 8 years ago

LFQProfiler consensus node accepts only a single FASTA file, PD usually accepts multiple

github.com/OpenMS/PDCommunityNodes - hannesveit opened this issue over 8 years ago

RNPxl: Empty PSMs and Proteins table

github.com/OpenMS/PDCommunityNodes - hannesveit opened this issue over 8 years ago

RNPxl & LFQProfiler results tables

github.com/OpenMS/PDCommunityNodes - hannesveit opened this issue over 8 years ago

Aborting workflows

github.com/OpenMS/PDCommunityNodes - hannesveit opened this issue over 8 years ago

RNPxl sometimes crashes when clicking on "Show spectrum"

github.com/OpenMS/PDCommunityNodes - hannesveit opened this issue over 8 years ago

Feature/mz tab legacy missing vals

github.com/OpenMS/de.openms.knime - jpfeuffer opened this pull request over 8 years ago

MSGFPlusAdapter - self-defined mods not passed on to the search result

github.com/OpenMS/OpenMS - lars20070 opened this issue over 8 years ago

Download of packages fails with certain CMake versions when using redirects

github.com/OpenMS/contrib - MaxAlex opened this issue almost 9 years ago

MzTabReader could set molecule type in smiles column via KNIME.core.chemistry

github.com/OpenMS/de.openms.knime - timosachsenberg opened this issue almost 9 years ago

MzTabReader input port has probably no specific mime type

github.com/OpenMS/de.openms.knime - timosachsenberg opened this issue almost 9 years ago

replace deprecated PortType with new new method

github.com/OpenMS/de.openms.knime - epoyraz opened this pull request almost 9 years ago

Added support for non-SMS column types

github.com/OpenMS/de.openms.knime - jpfeuffer opened this pull request almost 9 years ago

MzTab column encoding

github.com/OpenMS/de.openms.knime - timosachsenberg opened this issue almost 9 years ago

Installer cannot run silent/automated

github.com/OpenMS/windows-installer - cbielow opened this issue almost 9 years ago

[FEATURE] LuciPHOr2 package for new TOPP tool LuciphorAdapter

github.com/OpenMS/THIRDPARTY - PetraGutenbrunner opened this pull request almost 9 years ago

Storage of Thirdparty binaries

github.com/OpenMS/windows-installer - jpfeuffer opened this issue almost 9 years ago

Hack around not being able to find names for consts

github.com/OpenMS/autowrap - akatrevorjay opened this pull request about 9 years ago

Changed manifests to support KNIME 3.x

github.com/OpenMS/de.openms.knime - jpfeuffer opened this pull request about 9 years ago

Setting environment variables using binaries.ini

github.com/OpenMS/de.openms.knime - timosachsenberg opened this issue about 9 years ago

Add Support for Protein Section, Peptide Section and PSM Section

github.com/OpenMS/de.openms.knime - epoyraz opened this pull request about 9 years ago

Java version check possibly errornous

github.com/OpenMS/Tutorials - timosachsenberg opened this issue over 9 years ago

Feature/id text reader

github.com/OpenMS/de.openms.knime - hannesveit opened this pull request over 9 years ago

syncronize master with openms master

github.com/OpenMS/de.openms.knime - timosachsenberg opened this issue over 9 years ago

remove legacy branch kime 2.9

github.com/OpenMS/de.openms.knime - timosachsenberg opened this issue over 9 years ago

[autowrap 0.6.1] reference variables not supported as function return values

github.com/OpenMS/autowrap - Eliasvan opened this issue over 9 years ago

[autowrap 0.6.1] multiple types of annotations for a class not supported

github.com/OpenMS/autowrap - Eliasvan opened this issue over 9 years ago

[FIX] fixes problems with win32 not finding VSRedist

github.com/OpenMS/de.openms.knime - jpfeuffer opened this pull request almost 10 years ago

Updated install script to support NSIS3.0b1 version with 8kbyte strings.

github.com/OpenMS/windows-installer - jpfeuffer opened this pull request almost 10 years ago

FileInfo: memory usage reported correctly?

github.com/OpenMS/OpenMS - hendrikweisser opened this issue almost 10 years ago

Update README.md to include current Knime Nightly build link

github.com/OpenMS/de.openms.knime - FabianAicheler opened this pull request almost 10 years ago

Exception: no converter string

github.com/OpenMS/autowrap - ftpronk opened this issue about 10 years ago

enable ubsan

github.com/OpenMS/OpenMS - hroest opened this issue about 10 years ago

EGHTraceFitter sigma bug

github.com/OpenMS/OpenMS - WMGoBuffs opened this issue about 10 years ago

Show precursor charge in Scan View panel

github.com/OpenMS/OpenMS - lars20070 opened this issue over 10 years ago

Boost build error, msvc version inconsistent

github.com/OpenMS/contrib - aiche opened this issue over 10 years ago

MyriMatch adapter - N-terminal modifications

github.com/OpenMS/OpenMS - hendrikweisser opened this issue almost 11 years ago

Create image of workflow (and include it in repository) [627]