OpenMS issues | Ecosyste.ms: OpenCollective

[FIX] Remove unallowed comment at end of directive

github.com/OpenMS/autowrap - jpfeuffer opened this pull request over 3 years ago

ID score switcher error

github.com/OpenMS/OpenMS - Maithy15 opened this issue over 3 years ago

Conversion: lib_cpp[libcpp_utf8_string] and ["s1", "s2", ...]

github.com/OpenMS/autowrap - timosachsenberg opened this issue over 3 years ago

[Feature] html version with tex4ht

github.com/OpenMS/Tutorials - jpfeuffer opened this pull request over 3 years ago

Require setuptools, example/setup.py, autowrap/PXDParser.py and autowrap/CodeGenerator.py import pkg_resources

github.com/OpenMS/autowrap - hrnciar opened this pull request over 3 years ago

fixed some AddressSanitizer errors (mainly for demonstration purposes)

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request over 3 years ago

[Feature] Preserve shared_ptrs for non-const-ref std::vector conversion

github.com/OpenMS/autowrap - jpfeuffer opened this pull request almost 4 years ago

OpenMS 2.7: Update WF related to Sirius

github.com/OpenMS/Tutorials - oliveralka opened this pull request almost 4 years ago

Is the OpenMS Nodes v2.0.3 Manual Installation Package suitable for Proteome Discoverer 2.3?

github.com/OpenMS/PDCommunityNodes - zhaodongqing0715 opened this issue almost 4 years ago

fix importer classpath

github.com/OpenMS/de.openms.knime - jpfeuffer opened this pull request almost 4 years ago

remove seqan

github.com/OpenMS/dockerfiles - timosachsenberg opened this pull request almost 4 years ago

remove seqan dependency

github.com/OpenMS/dockerfiles - timosachsenberg opened this pull request almost 4 years ago

Update percolator to 3.5 (aka 3.05)

github.com/OpenMS/THIRDPARTY - timosachsenberg opened this pull request almost 4 years ago

[FIX] correctly parse (best_)search_engine_score.* to double

github.com/OpenMS/de.openms.knime - jpfeuffer opened this pull request almost 4 years ago

FIX SIRIUS binary location

github.com/OpenMS/THIRDPARTY - oliveralka opened this pull request almost 4 years ago

Upgrade SIRIUS

github.com/OpenMS/THIRDPARTY - oliveralka opened this pull request almost 4 years ago

remove seqan 1 from contrib

github.com/OpenMS/contrib - timosachsenberg opened this pull request almost 4 years ago

OpenSWATH for Metabolomics - DIAMetAlyzer

github.com/OpenMS/Tutorials - axelwalter opened this issue almost 4 years ago

fix handling of free slacks

github.com/OpenMS/contrib - bertrandboudaud opened this pull request almost 4 years ago

Update Docs + Readme + Website with new C std and min. compilers

github.com/OpenMS/OpenMS - jpfeuffer opened this issue almost 4 years ago

Parsing of nested templates with Cython 0.29.22 breaks (Cython 0.29.21 works)

github.com/OpenMS/autowrap - timosachsenberg opened this issue almost 4 years ago

Revert "[feature] add parameter to generate_code that specifies whether to pr…"

github.com/OpenMS/autowrap - uweschmitt opened this pull request almost 4 years ago

OpenSwathWorkflow crashes

github.com/OpenMS/OpenMS - sjr24 opened this issue almost 4 years ago

Update Comet and support all our enzymes

github.com/OpenMS/OpenMS - jpfeuffer opened this issue almost 4 years ago

add seqan-c17

github.com/OpenMS/contrib - jpfeuffer opened this pull request almost 4 years ago

[FIX] Disable error for warnings in HDF5 under AppleClang12

github.com/OpenMS/contrib - jpfeuffer opened this pull request almost 4 years ago

Update raptor to 1.1.0

github.com/OpenMS/usage_plots - eseiler opened this pull request about 4 years ago

rm shared libs

github.com/OpenMS/dockerfiles - oliveralka opened this pull request about 4 years ago

[FIX] manylinux

github.com/OpenMS/dockerfiles - oliveralka opened this pull request about 4 years ago

Add manylinux

github.com/OpenMS/dockerfiles - oliveralka opened this pull request about 4 years ago

add manylinux

github.com/OpenMS/dockerfiles - oliveralka opened this pull request about 4 years ago

Added more information to parser errors

github.com/OpenMS/autowrap - poshul opened this pull request about 4 years ago

[Update] PhosphoID

github.com/OpenMS/Tutorials - oliveralka opened this pull request about 4 years ago

Fixing bugs in Phosphoproteomics ID workflow

github.com/OpenMS/Tutorials - JeeH-K opened this pull request about 4 years ago

Phosphoproteomics_ID

github.com/OpenMS/Tutorials - oliveralka opened this issue about 4 years ago

Update seqan3 to 3.0.2

github.com/OpenMS/usage_plots - eseiler opened this pull request about 4 years ago

Add raptor to seqan_versions.txt

github.com/OpenMS/usage_plots - eseiler opened this pull request about 4 years ago

Support wrapping of functions with rvalue references

github.com/OpenMS/autowrap - timosachsenberg opened this issue over 4 years ago

std::move in autowrap

github.com/OpenMS/autowrap - oliveralka opened this issue over 4 years ago

Release/2.6.0

github.com/OpenMS/Tutorials - jpfeuffer opened this pull request over 4 years ago

Question about `wrap-attach` vs `@staticmethod`

github.com/OpenMS/autowrap - jpfeuffer opened this issue over 4 years ago

Some of the OpenMS FileConverter requirements might be missing.

github.com/OpenMS/Tutorials - sorenwacker opened this issue over 4 years ago

[FIX] Forgot if-cases for splitting of ListCells in MzTabReader

github.com/OpenMS/de.openms.knime - jpfeuffer opened this pull request over 4 years ago

Update handout with ThermoRawFileParser

github.com/OpenMS/Tutorials - Leon-Bichmann opened this pull request over 4 years ago

Adapt mzTabReader to upcoming changes in OpenMS 2.6

github.com/OpenMS/de.openms.knime - jpfeuffer opened this pull request over 4 years ago

Boost fails to build under macOS 10.15.6

github.com/OpenMS/contrib - lars20070 opened this issue over 4 years ago

Merge Feature/tooltags into master

github.com/OpenMS/usage_plots - jpfeuffer opened this pull request over 4 years ago

simple Phospho ID

github.com/OpenMS/Tutorials - timosachsenberg opened this pull request over 4 years ago

Include the hdf5-config.cmake if generated

github.com/OpenMS/contrib - jpfeuffer opened this issue over 4 years ago

update OpenSwath.knwf for 2.6.0 release

github.com/OpenMS/Tutorials - Leon-Bichmann opened this pull request over 4 years ago

Release automation

github.com/OpenMS/OpenMS - jpfeuffer opened this issue over 4 years ago

[FEATURE] added CV terms for spectral counting / label-free abundances

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request over 4 years ago

update TRFP123

github.com/OpenMS/THIRDPARTY - timosachsenberg opened this pull request over 4 years ago

Ion mobility support in OpenMS

github.com/OpenMS/OpenMS - hroest opened this issue over 4 years ago

Add lara and mars to the seqan versions file.

github.com/OpenMS/usage_plots - joergi-w opened this pull request over 4 years ago

Error Reporting in DataValue.cpp

github.com/OpenMS/OpenMS - ekawaler opened this issue over 4 years ago

exporting results of identification and quantitation as a table

github.com/OpenMS/Tutorials - pavel-shliaha opened this issue over 4 years ago

MzTab for TMT

github.com/OpenMS/OpenMS - jpfeuffer opened this issue over 4 years ago

Seg Fault in certain processes of libcpp_test binding.

github.com/OpenMS/autowrap - 24sharkS opened this issue over 4 years ago

[DRAFT] OpenSWATH for Metabolomics

github.com/OpenMS/Tutorials - oliveralka opened this pull request over 4 years ago

[FIX] omssa with depl. target 10.9

github.com/OpenMS/THIRDPARTY - oliveralka opened this pull request over 4 years ago

[FIX] omssa macOS

github.com/OpenMS/THIRDPARTY - oliveralka opened this pull request over 4 years ago

[FIX] add boost patch for xcode 11.4

github.com/OpenMS/contrib - jpfeuffer opened this pull request over 4 years ago

rebuild comet with min_macos_version at more places.

github.com/OpenMS/THIRDPARTY - jpfeuffer opened this pull request over 4 years ago

Update comet on non-Windows to match version

github.com/OpenMS/THIRDPARTY - jpfeuffer opened this pull request over 4 years ago

[ADD] percolator v3.04 MacOS

github.com/OpenMS/THIRDPARTY - oliveralka opened this pull request almost 5 years ago

Add files via upload

github.com/OpenMS/THIRDPARTY - timosachsenberg opened this pull request almost 5 years ago

Draft version of an ID only Phosphoproteomics workflow

github.com/OpenMS/Tutorials - timosachsenberg opened this pull request almost 5 years ago

[Feature] Include calculation of QC parameters in ProteomicsLFQ tool

github.com/OpenMS/OpenMS - jpfeuffer opened this pull request almost 5 years ago

update Percolator to 304

github.com/OpenMS/THIRDPARTY - timosachsenberg opened this pull request almost 5 years ago

update comet

github.com/OpenMS/THIRDPARTY - timosachsenberg opened this pull request almost 5 years ago

Update MSGF+ to v20200314

github.com/OpenMS/THIRDPARTY - timosachsenberg opened this pull request almost 5 years ago

proteomics lfq workflow with MSStats

github.com/OpenMS/Tutorials - timosachsenberg opened this pull request almost 5 years ago

[FEATURE] make xerces build with hidden symbols by default

github.com/OpenMS/contrib - jpfeuffer opened this pull request almost 5 years ago

Regarding error in CD 2.1 while trying to install Open MS node for metabolomics

github.com/OpenMS/MetaboProfiler - Shubham-Bioinformatician opened this issue almost 5 years ago

Fixed passing of macosx deployment target

github.com/OpenMS/contrib - jpfeuffer opened this pull request almost 5 years ago

Mavenized - LuXor Snapshot 2.1

github.com/OpenMS/THIRDPARTY - oliveralka opened this pull request almost 5 years ago

Only add architecture option if not a Win64 Generator

github.com/OpenMS/contrib - jpfeuffer opened this pull request almost 5 years ago

quotes

github.com/OpenMS/contrib - jpfeuffer opened this pull request almost 5 years ago

build fails on Windows for 2.5 Release

github.com/OpenMS/contrib - hroest opened this issue almost 5 years ago

[DRAFT] ProteomicsLFQ, current with lfq_spikein_dilution

github.com/OpenMS/Tutorials - oliveralka opened this pull request almost 5 years ago

update Versions

github.com/OpenMS/Tutorials - jpfeuffer opened this pull request almost 5 years ago

[BUILD] test Python 3.8 as well

github.com/OpenMS/autowrap - hroest opened this pull request almost 5 years ago

Feature/ref return values

github.com/OpenMS/autowrap - hroest opened this pull request almost 5 years ago

official update

github.com/OpenMS/THIRDPARTY - timosachsenberg opened this pull request almost 5 years ago

Update TRFP to self built 1.2.1

github.com/OpenMS/THIRDPARTY - timosachsenberg opened this pull request almost 5 years ago

Parsing of AttributeNodes in template argument fails

github.com/OpenMS/autowrap - poshul opened this issue almost 5 years ago

Start on updating the prerequisites check for 2.5

github.com/OpenMS/de.openms.knime - jpfeuffer opened this pull request almost 5 years ago

[FIX] sign jni inchi lib inside the jar for sirius

github.com/OpenMS/THIRDPARTY - jpfeuffer opened this pull request almost 5 years ago

Update Fido on macOS (min. deployment SDK for codesigning)

github.com/OpenMS/THIRDPARTY - jpfeuffer opened this pull request almost 5 years ago

Fixed missing O in output

github.com/OpenMS/autowrap - poshul opened this pull request almost 5 years ago

Update readme with a note about the versions file.

github.com/OpenMS/usage_plots - smehringer opened this pull request almost 5 years ago

Add seqan_versions.txt file

github.com/OpenMS/usage_plots - smehringer opened this pull request almost 5 years ago

Start using -A instead of the now deprecated Generator suffix

github.com/OpenMS/contrib - jpfeuffer opened this pull request about 5 years ago

fil missing in example data

github.com/OpenMS/Tutorials - johanneswellmann opened this issue about 5 years ago

MascotAdapterOnline seems not to work with defaults

github.com/OpenMS/OpenMS - bernt-matthias opened this issue about 5 years ago

[feature] add parameter to generate_code that specifies whether to pr…

github.com/OpenMS/autowrap - poshul opened this pull request about 5 years ago

[FIX] general

github.com/OpenMS/Tutorials - oliveralka opened this pull request about 5 years ago

Update handout.tex

github.com/OpenMS/Tutorials - timosachsenberg opened this pull request about 5 years ago

Cstd ptrs

github.com/OpenMS/autowrap - poshul opened this pull request about 5 years ago