OpenMS issues | Ecosyste.ms: OpenCollective

[FEATURE] generate typestubs

github.com/OpenMS/autowrap - jpfeuffer opened this pull request almost 3 years ago

Link fixin

github.com/OpenMS/pyopenms-docs - poshul opened this pull request almost 3 years ago

[FIX] defaultdict initialization and other hotfix

github.com/OpenMS/autowrap - jpfeuffer opened this pull request almost 3 years ago

[FEATURE] Create type stubs (pyi) next to pyx

github.com/OpenMS/autowrap - jpfeuffer opened this issue almost 3 years ago

update readme with multi line docstring

github.com/OpenMS/autowrap - axelwalter opened this pull request almost 3 years ago

Added cython3 support and support for staticmethod decorator

github.com/OpenMS/autowrap - jpfeuffer opened this pull request almost 3 years ago

[BUILD] Try to silence NPY Deprecated warnings in pyopenms

github.com/OpenMS/OpenMS - jpfeuffer opened this pull request almost 3 years ago

Create release GH action

github.com/OpenMS/autowrap - timosachsenberg opened this issue almost 3 years ago

How to create MassTrace objects with pyopenms

github.com/OpenMS/OpenMS - jtprince opened this issue about 3 years ago

Add how to write wrap-statements to README file

github.com/OpenMS/autowrap - axelwalter opened this issue about 3 years ago

autowrap currently fails on 2.7

github.com/OpenMS/autowrap - timosachsenberg opened this issue about 3 years ago

[FEATURE] Better control logging

github.com/OpenMS/autowrap - jpfeuffer opened this pull request about 3 years ago

Feature/multiline docs

github.com/OpenMS/autowrap - axelwalter opened this pull request about 3 years ago

Add sharg version to version.txt file

github.com/OpenMS/usage_plots - smehringer opened this pull request about 3 years ago

pass calling process environment to children

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request about 3 years ago

improve error message for wrap-doc

github.com/OpenMS/autowrap - cbielow opened this pull request about 3 years ago

none of the get_df() functions are working

github.com/OpenMS/pyopenms-docs - chrispook opened this issue about 3 years ago

Extend Tutorial on other FeatureFinders

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue about 3 years ago

FLASHIda

github.com/OpenMS/OpenMS - JeeH-K opened this pull request about 3 years ago

Added new features in SpectraMerger

github.com/OpenMS/OpenMS - JeeH-K opened this pull request about 3 years ago

PeakPickerHiRes fails with leading flank peaks

github.com/OpenMS/OpenMS - hroest opened this issue about 3 years ago

Clang tidy performance type-promotion-in-math-fn,move-const-arg,unnecessary-copy-initialization

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request about 3 years ago

Add extended text on isotope distributios

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue about 3 years ago

Wrapping new IdentificationData in pyopenms

github.com/OpenMS/OpenMS - timosachsenberg opened this issue about 3 years ago

Patch/use td library

github.com/OpenMS/OpenMS - SGSSGene opened this pull request about 3 years ago

Update seqan to 3.1.0

github.com/OpenMS/usage_plots - smehringer opened this pull request about 3 years ago

PeakTypeEstimator fails for timsTOF profile data

github.com/OpenMS/OpenMS - hroest opened this issue about 3 years ago

Add MZMLb support

github.com/OpenMS/OpenMS - poshul opened this issue about 3 years ago

How to extract DIA MS2 consensus features for ClusterMassTraces

github.com/OpenMS/OpenMS - yyi17 opened this issue about 3 years ago

Pyopenms actions. Mismatch between building and testing versions

github.com/OpenMS/OpenMS - jpfeuffer opened this issue about 3 years ago

Add IDFilter example

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue about 3 years ago

Wrap push_back as append

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue about 3 years ago

Add example how to filter ConsensusMap and move more C++ code from FileFiltering to library (and expose to python)

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue about 3 years ago

Add some std::moves to SpectrumMerger

github.com/OpenMS/OpenMS - jpfeuffer opened this issue about 3 years ago

Add example for baseline filtering

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue about 3 years ago

ConsensusID failure because MS run path not interpreted from MSFragger idXML

github.com/OpenMS/OpenMS - zhuchcn opened this issue about 3 years ago

Split up OpenMS library

github.com/OpenMS/OpenMS - hroest opened this pull request about 3 years ago

"Import pyopenms" section hierarchy incorrect

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this issue about 3 years ago

pip version 0.22.3 prints version=0.22.2

github.com/OpenMS/autowrap - jpfeuffer opened this issue about 3 years ago

[GH Actions] PR tests: only convert and test changed RSTs

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this issue about 3 years ago

[WIP] Add repo2docker action

github.com/OpenMS/pyopenms-docs - rahul799 opened this pull request about 3 years ago

Pushes with GitHub tokens do not trigger workflows

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this issue about 3 years ago

Decrease the binder launch time using Docker

github.com/OpenMS/pyopenms-docs - rahul799 opened this issue about 3 years ago

Edit and add badges for Build, test and sphinx/RTD

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this pull request about 3 years ago

remove MyriMatch

github.com/OpenMS/THIRDPARTY - timosachsenberg opened this pull request about 3 years ago

Add branch generation to release job in OpenMS repo

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this issue about 3 years ago

Add tutorial on spectrum merging (SpectraMerger algorithms)

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue about 3 years ago

Update needle 1.0.1

github.com/OpenMS/usage_plots - MitraDarja opened this pull request about 3 years ago

Double-check case sensitivity of anchor links

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this issue about 3 years ago

convert more of the existing pyOpenMS tools that use argparse to use CTDopts

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue about 3 years ago

Add link to jupyter notebook as well (e.g., next to binder button)

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue about 3 years ago

Publicly available workflows or building blocks?

github.com/OpenMS/pyopenms-docs - sorenwacker opened this issue over 3 years ago

iPyNB conversion for code in Notes not working

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this issue over 3 years ago

rename folder

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this pull request over 3 years ago

Feature/update cmake version

github.com/OpenMS/contrib - timosachsenberg opened this pull request over 3 years ago

Linux dependency missing for KNIME nodes 2.7.0

github.com/OpenMS/OpenMS - julianu opened this issue over 3 years ago

Add needle 1.0.0

github.com/OpenMS/usage_plots - eseiler opened this pull request over 3 years ago

Added pandoc filters for a conversion with plain pandoc

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this pull request over 3 years ago

algo parameter documentation

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue over 3 years ago

Spectrum alignment menu

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue over 3 years ago

IsotopeDistribution should provide __dict__ conversion

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue over 3 years ago

link to pxd files so users can easier look up all wrapped methods

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue over 3 years ago

Fix peptide search. Use larger data. Add inference.

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this pull request over 3 years ago

Build libomp dynamic

github.com/OpenMS/contrib - oliveralka opened this pull request over 3 years ago

Code that should be wrapped in PyOpenMS

github.com/OpenMS/pyopenms-docs - oliveralka opened this issue over 3 years ago

QC_with_OpenMS R View fails on linux when given absolute path

github.com/OpenMS/Tutorials - poshul opened this issue over 3 years ago

[ADD] openmp

github.com/OpenMS/contrib - oliveralka opened this pull request over 3 years ago

validate experimental design

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request over 3 years ago

Update raptor to 2.0.0

github.com/OpenMS/usage_plots - eseiler opened this pull request over 3 years ago

[ADD] set zlib osx deployment target (cmake)

github.com/OpenMS/contrib - oliveralka opened this pull request over 3 years ago

[FIX] Metabolite_DeNovoID WF

github.com/OpenMS/Tutorials - oliveralka opened this pull request over 3 years ago

The question of the lipidomics

github.com/OpenMS/workflows - hello-lei opened this issue over 3 years ago

Remove deprecated Excel writers

github.com/OpenMS/Tutorials - jpfeuffer opened this issue over 3 years ago

Split collection column missing for Molecule Type Cast

github.com/OpenMS/Tutorials - jpfeuffer opened this issue over 3 years ago

Updated workflows for OpenMS 2.7

github.com/OpenMS/Tutorials - oliveralka opened this pull request over 3 years ago

Necessary split collection column missing in almost all Metabo WFs and pictures

github.com/OpenMS/Tutorials - jpfeuffer opened this issue over 3 years ago

Update outdated figures

github.com/OpenMS/Tutorials - oliveralka opened this issue over 3 years ago

ProteomicsLFQ

github.com/OpenMS/Tutorials - oliveralka opened this issue over 3 years ago

SIRIUSAdapter + HighResPrecursorMassCorrector

github.com/OpenMS/Tutorials - oliveralka opened this issue over 3 years ago

[FIX] minted float env

github.com/OpenMS/Tutorials - oliveralka opened this pull request over 3 years ago

Update version in version.py

github.com/OpenMS/autowrap - poshul opened this pull request over 3 years ago

Placement of code examples via minted

github.com/OpenMS/Tutorials - oliveralka opened this issue over 3 years ago

[FIX] OSW Metabolomics

github.com/OpenMS/Tutorials - oliveralka opened this pull request over 3 years ago

[ADD] tutorial-ci

github.com/OpenMS/Tutorials - oliveralka opened this pull request over 3 years ago

[ADD] tutorial-ci

github.com/OpenMS/Tutorials - oliveralka opened this pull request over 3 years ago

libicu has no rpath (anymore?) on linux

github.com/OpenMS/OpenMS - jpfeuffer opened this issue over 3 years ago

[FEATURE] Use lstrip in multiline annotation parsing to allow for empty lines e.g. in wrap-doc

github.com/OpenMS/autowrap - jpfeuffer opened this pull request over 3 years ago

FIAMSScheduler test fails

github.com/OpenMS/OpenMS - timosachsenberg opened this issue over 3 years ago

[Udpate] SIRIUS to version 4.9.0

github.com/OpenMS/THIRDPARTY - oliveralka opened this pull request over 3 years ago

Improve PyOpenMS Tutorial

github.com/OpenMS/Tutorials - oliveralka opened this issue over 3 years ago

[Feature] AccurateMassSearch sqlite support

github.com/OpenMS/OpenMS - jpfeuffer opened this pull request over 3 years ago

Formulate learning goals at top of each topic.

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue over 3 years ago

remove OMSSA because of deprecation

github.com/OpenMS/THIRDPARTY - timosachsenberg opened this pull request over 3 years ago

Add basic protein inference example

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue over 3 years ago

Update seqan3 to 3.0.3

github.com/OpenMS/usage_plots - eseiler opened this pull request over 3 years ago

SIRIUS 4.8.2

github.com/OpenMS/THIRDPARTY - oliveralka opened this pull request over 3 years ago

add internal ions and n terminal losses

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request over 3 years ago

wrapping static functions as non-static ones doesn't cause an error

github.com/OpenMS/autowrap - timosachsenberg opened this issue over 3 years ago

Output error message if pxd comment is found that can't be parsed (e.g., extra space after : )

github.com/OpenMS/autowrap - timosachsenberg opened this issue over 3 years ago

TODOs for HTML version

github.com/OpenMS/Tutorials - jpfeuffer opened this issue over 3 years ago