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OpenMS

Make mass spectrometry analysis accessible to anyone
Collective - Host: opensource - https://opencollective.com/openms - Website: https://openms.org - Code: https://github.com/openms

Linux dependency missing for KNIME nodes 2.7.0

github.com/OpenMS/OpenMS - julianu opened this issue about 3 years ago
Add needle 1.0.0

github.com/OpenMS/usage_plots - eseiler opened this pull request about 3 years ago
Added pandoc filters for a conversion with plain pandoc

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this pull request about 3 years ago
algo parameter documentation

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue about 3 years ago
Spectrum alignment menu

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue about 3 years ago
IsotopeDistribution should provide __dict__ conversion

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue about 3 years ago
link to pxd files so users can easier look up all wrapped methods

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue about 3 years ago
Fix peptide search. Use larger data. Add inference.

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this pull request about 3 years ago
Build libomp dynamic

github.com/OpenMS/contrib - oliveralka opened this pull request about 3 years ago
Code that should be wrapped in PyOpenMS

github.com/OpenMS/pyopenms-docs - oliveralka opened this issue about 3 years ago
QC_with_OpenMS R View fails on linux when given absolute path

github.com/OpenMS/Tutorials - poshul opened this issue about 3 years ago
[ADD] openmp

github.com/OpenMS/contrib - oliveralka opened this pull request about 3 years ago
validate experimental design

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request about 3 years ago
Update raptor to 2.0.0

github.com/OpenMS/usage_plots - eseiler opened this pull request about 3 years ago
[ADD] set zlib osx deployment target (cmake)

github.com/OpenMS/contrib - oliveralka opened this pull request about 3 years ago
[FIX] Metabolite_DeNovoID WF

github.com/OpenMS/Tutorials - oliveralka opened this pull request about 3 years ago
The question of the lipidomics

github.com/OpenMS/workflows - hello-lei opened this issue about 3 years ago
Remove deprecated Excel writers

github.com/OpenMS/Tutorials - jpfeuffer opened this issue about 3 years ago
Split collection column missing for Molecule Type Cast

github.com/OpenMS/Tutorials - jpfeuffer opened this issue about 3 years ago
Updated workflows for OpenMS 2.7

github.com/OpenMS/Tutorials - oliveralka opened this pull request about 3 years ago
Necessary split collection column missing in almost all Metabo WFs and pictures

github.com/OpenMS/Tutorials - jpfeuffer opened this issue about 3 years ago
Update outdated figures

github.com/OpenMS/Tutorials - oliveralka opened this issue about 3 years ago
ProteomicsLFQ

github.com/OpenMS/Tutorials - oliveralka opened this issue about 3 years ago
SIRIUSAdapter + HighResPrecursorMassCorrector

github.com/OpenMS/Tutorials - oliveralka opened this issue about 3 years ago
[FIX] minted float env

github.com/OpenMS/Tutorials - oliveralka opened this pull request about 3 years ago
Update version in version.py

github.com/OpenMS/autowrap - poshul opened this pull request about 3 years ago
Placement of code examples via minted

github.com/OpenMS/Tutorials - oliveralka opened this issue about 3 years ago
[FIX] OSW Metabolomics

github.com/OpenMS/Tutorials - oliveralka opened this pull request over 3 years ago
[ADD] tutorial-ci

github.com/OpenMS/Tutorials - oliveralka opened this pull request over 3 years ago
[ADD] tutorial-ci

github.com/OpenMS/Tutorials - oliveralka opened this pull request over 3 years ago
libicu has no rpath (anymore?) on linux

github.com/OpenMS/OpenMS - jpfeuffer opened this issue over 3 years ago
[FEATURE] Use lstrip in multiline annotation parsing to allow for empty lines e.g. in wrap-doc

github.com/OpenMS/autowrap - jpfeuffer opened this pull request over 3 years ago
[Udpate] SIRIUS to version 4.9.0

github.com/OpenMS/THIRDPARTY - oliveralka opened this pull request over 3 years ago
Improve PyOpenMS Tutorial

github.com/OpenMS/Tutorials - oliveralka opened this issue over 3 years ago
[Feature] AccurateMassSearch sqlite support

github.com/OpenMS/OpenMS - jpfeuffer opened this pull request over 3 years ago
Formulate learning goals at top of each topic.

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue over 3 years ago
remove OMSSA because of deprecation

github.com/OpenMS/THIRDPARTY - timosachsenberg opened this pull request over 3 years ago
Add basic protein inference example

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue over 3 years ago
Update seqan3 to 3.0.3

github.com/OpenMS/usage_plots - eseiler opened this pull request over 3 years ago
SIRIUS 4.8.2

github.com/OpenMS/THIRDPARTY - oliveralka opened this pull request over 3 years ago
add internal ions and n terminal losses

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request over 3 years ago
wrapping static functions as non-static ones doesn't cause an error

github.com/OpenMS/autowrap - timosachsenberg opened this issue over 3 years ago
Output error message if pxd comment is found that can't be parsed (e.g., extra space after : )

github.com/OpenMS/autowrap - timosachsenberg opened this issue over 3 years ago
TODOs for HTML version

github.com/OpenMS/Tutorials - jpfeuffer opened this issue over 3 years ago
[FIX] Remove unallowed comment at end of directive

github.com/OpenMS/autowrap - jpfeuffer opened this pull request over 3 years ago
ID score switcher error

github.com/OpenMS/OpenMS - Maithy15 opened this issue over 3 years ago
Conversion: lib_cpp[libcpp_utf8_string] and ["s1", "s2", ...]

github.com/OpenMS/autowrap - timosachsenberg opened this issue over 3 years ago
[Feature] html version with tex4ht

github.com/OpenMS/Tutorials - jpfeuffer opened this pull request over 3 years ago
Require setuptools, example/setup.py, autowrap/PXDParser.py and autowrap/CodeGenerator.py import pkg_resources

github.com/OpenMS/autowrap - hrnciar opened this pull request over 3 years ago
fixed some AddressSanitizer errors (mainly for demonstration purposes)

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request over 3 years ago
[Feature] Preserve shared_ptrs for non-const-ref std::vector conversion

github.com/OpenMS/autowrap - jpfeuffer opened this pull request over 3 years ago
OpenMS 2.7: Update WF related to Sirius

github.com/OpenMS/Tutorials - oliveralka opened this pull request over 3 years ago
Is the OpenMS Nodes v2.0.3 Manual Installation Package suitable for Proteome Discoverer 2.3?

github.com/OpenMS/PDCommunityNodes - zhaodongqing0715 opened this issue over 3 years ago
fix importer classpath

github.com/OpenMS/de.openms.knime - jpfeuffer opened this pull request over 3 years ago
remove seqan

github.com/OpenMS/dockerfiles - timosachsenberg opened this pull request over 3 years ago
remove seqan dependency

github.com/OpenMS/dockerfiles - timosachsenberg opened this pull request over 3 years ago
Update percolator to 3.5 (aka 3.05)

github.com/OpenMS/THIRDPARTY - timosachsenberg opened this pull request over 3 years ago
[FIX] correctly parse (best_)search_engine_score.* to double

github.com/OpenMS/de.openms.knime - jpfeuffer opened this pull request over 3 years ago
FIX SIRIUS binary location

github.com/OpenMS/THIRDPARTY - oliveralka opened this pull request over 3 years ago
Upgrade SIRIUS

github.com/OpenMS/THIRDPARTY - oliveralka opened this pull request over 3 years ago
remove seqan 1 from contrib

github.com/OpenMS/contrib - timosachsenberg opened this pull request over 3 years ago
OpenSWATH for Metabolomics - DIAMetAlyzer

github.com/OpenMS/Tutorials - axelwalter opened this issue over 3 years ago
fix handling of free slacks

github.com/OpenMS/contrib - bertrandboudaud opened this pull request over 3 years ago
Update Docs + Readme + Website with new C std and min. compilers

github.com/OpenMS/OpenMS - jpfeuffer opened this issue over 3 years ago
Parsing of nested templates with Cython 0.29.22 breaks (Cython 0.29.21 works)

github.com/OpenMS/autowrap - timosachsenberg opened this issue over 3 years ago
Revert "[feature] add parameter to generate_code that specifies whether to pr…"

github.com/OpenMS/autowrap - uweschmitt opened this pull request over 3 years ago
OpenSwathWorkflow crashes

github.com/OpenMS/OpenMS - sjr24 opened this issue over 3 years ago
Update Comet and support all our enzymes

github.com/OpenMS/OpenMS - jpfeuffer opened this issue over 3 years ago
add seqan-c17

github.com/OpenMS/contrib - jpfeuffer opened this pull request over 3 years ago
[FIX] Disable error for warnings in HDF5 under AppleClang12

github.com/OpenMS/contrib - jpfeuffer opened this pull request almost 4 years ago
Update raptor to 1.1.0

github.com/OpenMS/usage_plots - eseiler opened this pull request almost 4 years ago
rm shared libs

github.com/OpenMS/dockerfiles - oliveralka opened this pull request almost 4 years ago
[FIX] manylinux

github.com/OpenMS/dockerfiles - oliveralka opened this pull request almost 4 years ago
Add manylinux

github.com/OpenMS/dockerfiles - oliveralka opened this pull request almost 4 years ago
add manylinux

github.com/OpenMS/dockerfiles - oliveralka opened this pull request almost 4 years ago
Added more information to parser errors

github.com/OpenMS/autowrap - poshul opened this pull request almost 4 years ago
[Update] PhosphoID

github.com/OpenMS/Tutorials - oliveralka opened this pull request almost 4 years ago
Fixing bugs in Phosphoproteomics ID workflow

github.com/OpenMS/Tutorials - JeeH-K opened this pull request almost 4 years ago
Phosphoproteomics_ID

github.com/OpenMS/Tutorials - oliveralka opened this issue almost 4 years ago
Update seqan3 to 3.0.2

github.com/OpenMS/usage_plots - eseiler opened this pull request about 4 years ago
Add raptor to seqan_versions.txt

github.com/OpenMS/usage_plots - eseiler opened this pull request about 4 years ago
Support wrapping of functions with rvalue references

github.com/OpenMS/autowrap - timosachsenberg opened this issue about 4 years ago
std::move in autowrap

github.com/OpenMS/autowrap - oliveralka opened this issue about 4 years ago
Release/2.6.0

github.com/OpenMS/Tutorials - jpfeuffer opened this pull request about 4 years ago
Question about `wrap-attach` vs `@staticmethod`

github.com/OpenMS/autowrap - jpfeuffer opened this issue about 4 years ago
Some of the OpenMS FileConverter requirements might be missing.

github.com/OpenMS/Tutorials - sorenwacker opened this issue about 4 years ago
[FIX] Forgot if-cases for splitting of ListCells in MzTabReader

github.com/OpenMS/de.openms.knime - jpfeuffer opened this pull request about 4 years ago
Update handout with ThermoRawFileParser

github.com/OpenMS/Tutorials - Leon-Bichmann opened this pull request about 4 years ago
Adapt mzTabReader to upcoming changes in OpenMS 2.6

github.com/OpenMS/de.openms.knime - jpfeuffer opened this pull request about 4 years ago
Boost fails to build under macOS 10.15.6

github.com/OpenMS/contrib - lars20070 opened this issue about 4 years ago
Merge Feature/tooltags into master

github.com/OpenMS/usage_plots - jpfeuffer opened this pull request about 4 years ago
simple Phospho ID

github.com/OpenMS/Tutorials - timosachsenberg opened this pull request about 4 years ago
Include the hdf5-config.cmake if generated

github.com/OpenMS/contrib - jpfeuffer opened this issue about 4 years ago
update OpenSwath.knwf for 2.6.0 release

github.com/OpenMS/Tutorials - Leon-Bichmann opened this pull request about 4 years ago
Release automation

github.com/OpenMS/OpenMS - jpfeuffer opened this issue about 4 years ago
[FEATURE] added CV terms for spectral counting / label-free abundances

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request about 4 years ago
update TRFP123

github.com/OpenMS/THIRDPARTY - timosachsenberg opened this pull request about 4 years ago
Ion mobility support in OpenMS

github.com/OpenMS/OpenMS - hroest opened this issue about 4 years ago
Add lara and mars to the seqan versions file.

github.com/OpenMS/usage_plots - joergi-w opened this pull request about 4 years ago
Error Reporting in DataValue.cpp

github.com/OpenMS/OpenMS - ekawaler opened this issue about 4 years ago