OpenMS issues | Ecosyste.ms: OpenCollective

Fix redirects

github.com/OpenMS/OpenMS-website - rahul799 opened this pull request almost 2 years ago

Pytorch

github.com/OpenMS/OpenMS - Arslan-Siraj opened this pull request almost 2 years ago

Modified PeakPickerHiRes to address issue #5687

github.com/OpenMS/OpenMS - alhigaylan opened this pull request almost 2 years ago

[FIX] comment parsing once and for all

github.com/OpenMS/autowrap - jpfeuffer opened this pull request almost 2 years ago

genericized file loader where possible

github.com/OpenMS/OpenMS - poshul opened this pull request almost 2 years ago

Sign NSIS package (windows installer)

github.com/OpenMS/OpenMS - timosachsenberg opened this issue almost 2 years ago

Update ranges if spectra/experiments are read from file

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request almost 2 years ago

CDASH certificate error

github.com/OpenMS/OpenMS - timosachsenberg opened this issue almost 2 years ago

[FEATURE][PYOMS] try adding some wrapnogil

github.com/OpenMS/OpenMS - jpfeuffer opened this pull request almost 2 years ago

Potential useful information to review and add to the readthedocs page - from learning unit 11

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue almost 2 years ago

Potential useful information to review and add to the readthedocs page - from learning unit 10

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue almost 2 years ago

Potential useful information to review and add to the readthedocs page - from learning unit 9

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue almost 2 years ago

Potential useful information to review and add to the readthedocs page - from learning unit 7

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue almost 2 years ago

Potential useful information to review and add to the readthedocs page - from learning unit 6

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue almost 2 years ago

Potential useful information to review and add to the readthedocs page - from learning unit 5

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue almost 2 years ago

Potential useful information to review and add to the readthedocs page - from learning unit 4

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue almost 2 years ago

Potential useful information to review and add to the readthedocs page - from learning unit 3

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue almost 2 years ago

Potential useful information to review and add to the readthedocs page - from learning unit 2

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue almost 2 years ago

https://openms.readthedocs.io/en/latest/develop-with-openms/openms-core-cplusplus-library.html is empty

github.com/OpenMS/OpenMS-docs - timosachsenberg opened this issue almost 2 years ago

Timosachsenberg patch 2

github.com/OpenMS/contrib - timosachsenberg opened this pull request almost 2 years ago

Fix/deploy docker

github.com/OpenMS/contrib - timosachsenberg opened this pull request almost 2 years ago

Fix/deploy docker

github.com/OpenMS/contrib - timosachsenberg opened this pull request almost 2 years ago

Add information on hyperscore from one of our past lectures

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue almost 2 years ago

Opening an issue should also give possibility to do a feature request / ask for additional documentation.

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue almost 2 years ago

checkout repo to get context

github.com/OpenMS/contrib - timosachsenberg opened this pull request almost 2 years ago

Docker actions broken after moving dockerfiles

github.com/OpenMS/contrib - jpfeuffer opened this issue almost 2 years ago

Name issue nightly pypi

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this issue almost 2 years ago

Update _redirects

github.com/OpenMS/OpenMS-website - poshul opened this pull request almost 2 years ago

Automatically adapt information at website build time or display time

github.com/OpenMS/OpenMS-website - jpfeuffer opened this issue almost 2 years ago

[ByGHAction] Updated OpenMS package version numbers

github.com/OpenMS/OpenMS - github-actions[bot] opened this pull request almost 2 years ago

Update comet executable to 2023 version

github.com/OpenMS/THIRDPARTY - jonasscheid opened this pull request almost 2 years ago

Update comet.exe

github.com/OpenMS/THIRDPARTY - jonasscheid opened this issue almost 2 years ago

Softwipe results -- with action items for everybody who wants to fix stuff

github.com/OpenMS/OpenMS - cbielow opened this issue almost 2 years ago

formula notation not correct

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue almost 2 years ago

Error opening stream: HTTP 404: Not Found (Kernel does not exist:

github.com/OpenMS/cling-notebooks - tapaswenipathak opened this issue almost 2 years ago

Add base for c++ xeus-cling notebooks to run google collab, mybinder.org

github.com/OpenMS/cling-notebooks - tapaswenipathak opened this pull request almost 2 years ago

Try making pandas and matplotlib optional

github.com/OpenMS/OpenMS - jpfeuffer opened this pull request almost 2 years ago

:py:class: references look weird in ipynb notebooks

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this issue almost 2 years ago

Re-organize quick start guide locations

github.com/OpenMS/OpenMS-docs - axelwalter opened this pull request almost 2 years ago

OpenSwathAssayGenerator check for duplicate transitions

github.com/OpenMS/OpenMS - jcharkow opened this issue almost 2 years ago

Overhaul archive

github.com/OpenMS/OpenMS - jpfeuffer opened this issue almost 2 years ago

remove OpenMS checkout from contrib

github.com/OpenMS/contrib - timosachsenberg opened this pull request almost 2 years ago

Create new logo

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this issue almost 2 years ago

Feat/hdf5-blosc

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request almost 2 years ago

[FEATURE] First try with pydata theme

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this pull request almost 2 years ago

Generate ipynb on-the-fly with postBuild

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this issue almost 2 years ago

remove from dockerfile repo

github.com/OpenMS/dockerfiles - timosachsenberg opened this pull request almost 2 years ago

update manylinux action

github.com/OpenMS/contrib - timosachsenberg opened this pull request almost 2 years ago

re-added requirements processing

github.com/OpenMS/pyopenms-docs - poshul opened this pull request almost 2 years ago

have versioned docs. I.e. a nice visible drop-down on the web interface such that people can switch from nightly to release

github.com/OpenMS/pyopenms-docs - poshul opened this issue almost 2 years ago

Surround USB Stick specific parts with tabs in User tutorial

github.com/OpenMS/OpenMS-docs - jpfeuffer opened this issue almost 2 years ago

Rewrite file paths in User tutorial

github.com/OpenMS/OpenMS-docs - jpfeuffer opened this issue almost 2 years ago

Find a way to not duplicate information between website and OpenMS-docs

github.com/OpenMS/OpenMS-website - jpfeuffer opened this issue almost 2 years ago

update user guide

github.com/OpenMS/OpenMS-docs - jpfeuffer opened this pull request almost 2 years ago

fix keyboard shortcut

github.com/OpenMS/OpenMS-docs - cbielow opened this pull request almost 2 years ago

Dockerfiles from OpenMS/dockerfiles have been moved to contrib/docker…

github.com/OpenMS/contrib - KyowonJeong opened this pull request almost 2 years ago

contrib files have been removed. Now in OpenMS/contrib/dockerfiles

github.com/OpenMS/dockerfiles - KyowonJeong opened this pull request almost 2 years ago

Buttons say they link to pdf but link to html instead

github.com/OpenMS/OpenMS-website - timosachsenberg opened this issue almost 2 years ago

https://openms.readthedocs.io/en/latest/tutorials-and-quickstart-guides/quickstart-guides.html only contains two links

github.com/OpenMS/OpenMS-docs - timosachsenberg opened this issue almost 2 years ago

Confusion due to missing/invisible versioned docs

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this issue almost 2 years ago

[readthedocs] Search window in dark mode

github.com/OpenMS/OpenMS-docs - JeeH-K opened this issue almost 2 years ago

Revert to sirius 5.6.3

github.com/OpenMS/THIRDPARTY - axelwalter opened this pull request almost 2 years ago

Add furo theme to pyopenms.readthedocs.io

github.com/OpenMS/pyopenms-docs - tapaswenipathak opened this pull request almost 2 years ago

Update Sirius Linux jar files

github.com/OpenMS/THIRDPARTY - axelwalter opened this pull request almost 2 years ago

Added FLASHDeconvQ page and edited the relevant page

github.com/OpenMS/OpenMS-website - JeeH-K opened this pull request almost 2 years ago

"pattern and collected intensities don't match" error in MetaproSIP

github.com/OpenMS/OpenMS - xyz1396 opened this issue almost 2 years ago

Update downloads.md

github.com/OpenMS/OpenMS-docs - poshul opened this pull request almost 2 years ago

OpenMS_tutorial still has refs to ftp.mi.fu-berlin.de/OpenMS/nightly_binaries/

github.com/OpenMS/OpenMS - poshul opened this issue almost 2 years ago

Ion Mobility 1/k0 to CCS

github.com/OpenMS/OpenMS - timosachsenberg opened this issue almost 2 years ago

sirius 5.6.4-snapshot

github.com/OpenMS/THIRDPARTY - axelwalter opened this pull request almost 2 years ago

create different startup checks for openms and thirdparty

github.com/OpenMS/de.openms.knime - jpfeuffer opened this pull request almost 2 years ago

test workflows added by eugen to KNIME hub

github.com/OpenMS/OpenMS - timosachsenberg opened this issue almost 2 years ago

Fix xerces icu

github.com/OpenMS/contrib - cbielow opened this pull request almost 2 years ago

update to sirius 5.6.3

github.com/OpenMS/THIRDPARTY - axelwalter opened this pull request almost 2 years ago

Feature/improve flash forced ms

github.com/OpenMS/OpenMS - poshul opened this pull request almost 2 years ago

Suggestion for TOPPView tutorial

github.com/OpenMS/OpenMS-docs - JeeH-K opened this issue almost 2 years ago

test blacken

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this pull request almost 2 years ago

test blacken

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this pull request almost 2 years ago

OpenMS Tutorial - Suggested Changes & Issues

github.com/OpenMS/OpenMS-docs - carobarry opened this issue almost 2 years ago

Duplicate introduction!

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this issue almost 2 years ago

[FIX] blacken and dozens of other warnings. Also parellelize build.

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this pull request almost 2 years ago

[FIX] Merge Residues of same modification

github.com/OpenMS/OpenMS - Amit0617 opened this pull request almost 2 years ago

Link to tools in the background sections

github.com/OpenMS/OpenMS-docs - jpfeuffer opened this issue almost 2 years ago

Documentation redirects added

github.com/OpenMS/OpenMS-website - rahul799 opened this pull request almost 2 years ago

From form: Processing CSV files

github.com/OpenMS/OpenMS-docs - rahul799 opened this issue almost 2 years ago

Overwritten/aliased classes not documented correctly

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this issue almost 2 years ago

Remove set-output from actions

github.com/OpenMS/contrib - poshul opened this pull request almost 2 years ago

Update news.md

github.com/OpenMS/OpenMS-website - tjeerdijk opened this pull request almost 2 years ago

fixes #177

github.com/OpenMS/autowrap - jpfeuffer opened this pull request almost 2 years ago

release-autowrap.yaml need updating

github.com/OpenMS/autowrap - poshul opened this issue almost 2 years ago

From form: The webpage for the MetaProSIP will not open and I cannot figure out how to operate the software with openMS

github.com/OpenMS/OpenMS-website - rahul799 opened this issue almost 2 years ago

Deploy docker image (ubuntu) to ghcr.io uses the deprecated "set-output" command

github.com/OpenMS/contrib - poshul opened this issue almost 2 years ago

Lychee fails during CI action

github.com/OpenMS/OpenMS-docs - poshul opened this issue almost 2 years ago

Copying of logs not working anymore after infra update

github.com/OpenMS/usage_plots - jpfeuffer opened this issue almost 2 years ago

Update vcredist2010

github.com/OpenMS/THIRDPARTY - poshul opened this pull request almost 2 years ago

Update MSGF+ to v20230112

github.com/OpenMS/THIRDPARTY - bernt-matthias opened this pull request almost 2 years ago

Autoapply reformating in CI?

github.com/OpenMS/autowrap - jpfeuffer opened this issue about 2 years ago

A few typing fixes

github.com/OpenMS/autowrap - jpfeuffer opened this pull request about 2 years ago

Try to add real BooleanConverter

github.com/OpenMS/autowrap - jpfeuffer opened this pull request about 2 years ago

ConversionProviders for libcpp_container[libcpp_*_string, *] not picked up -> Careful with typing

github.com/OpenMS/autowrap - jpfeuffer opened this issue about 2 years ago