OpenMS issues | Ecosyste.ms: OpenCollective

Find a way to not duplicate information between website and OpenMS-docs

github.com/OpenMS/OpenMS-website - jpfeuffer opened this issue over 1 year ago

update user guide

github.com/OpenMS/OpenMS-docs - jpfeuffer opened this pull request over 1 year ago

fix keyboard shortcut

github.com/OpenMS/OpenMS-docs - cbielow opened this pull request over 1 year ago

Dockerfiles from OpenMS/dockerfiles have been moved to contrib/docker…

github.com/OpenMS/contrib - KyowonJeong opened this pull request over 1 year ago

contrib files have been removed. Now in OpenMS/contrib/dockerfiles

github.com/OpenMS/dockerfiles - KyowonJeong opened this pull request over 1 year ago

Buttons say they link to pdf but link to html instead

github.com/OpenMS/OpenMS-website - timosachsenberg opened this issue over 1 year ago

https://openms.readthedocs.io/en/latest/tutorials-and-quickstart-guides/quickstart-guides.html only contains two links

github.com/OpenMS/OpenMS-docs - timosachsenberg opened this issue over 1 year ago

Confusion due to missing/invisible versioned docs

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this issue over 1 year ago

[readthedocs] Search window in dark mode

github.com/OpenMS/OpenMS-docs - JeeH-K opened this issue over 1 year ago

Revert to sirius 5.6.3

github.com/OpenMS/THIRDPARTY - axelwalter opened this pull request over 1 year ago

Add furo theme to pyopenms.readthedocs.io

github.com/OpenMS/pyopenms-docs - tapaswenipathak opened this pull request over 1 year ago

Update Sirius Linux jar files

github.com/OpenMS/THIRDPARTY - axelwalter opened this pull request over 1 year ago

Added FLASHDeconvQ page and edited the relevant page

github.com/OpenMS/OpenMS-website - JeeH-K opened this pull request over 1 year ago

"pattern and collected intensities don't match" error in MetaproSIP

github.com/OpenMS/OpenMS - xyz1396 opened this issue over 1 year ago

Update downloads.md

github.com/OpenMS/OpenMS-docs - poshul opened this pull request over 1 year ago

OpenMS_tutorial still has refs to ftp.mi.fu-berlin.de/OpenMS/nightly_binaries/

github.com/OpenMS/OpenMS - poshul opened this issue over 1 year ago

Ion Mobility 1/k0 to CCS

github.com/OpenMS/OpenMS - timosachsenberg opened this issue over 1 year ago

sirius 5.6.4-snapshot

github.com/OpenMS/THIRDPARTY - axelwalter opened this pull request over 1 year ago

create different startup checks for openms and thirdparty

github.com/OpenMS/de.openms.knime - jpfeuffer opened this pull request over 1 year ago

test workflows added by eugen to KNIME hub

github.com/OpenMS/OpenMS - timosachsenberg opened this issue over 1 year ago

Fix xerces icu

github.com/OpenMS/contrib - cbielow opened this pull request over 1 year ago

update to sirius 5.6.3

github.com/OpenMS/THIRDPARTY - axelwalter opened this pull request over 1 year ago

Feature/improve flash forced ms

github.com/OpenMS/OpenMS - poshul opened this pull request over 1 year ago

Suggestion for TOPPView tutorial

github.com/OpenMS/OpenMS-docs - JeeH-K opened this issue over 1 year ago

test blacken

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this pull request over 1 year ago

test blacken

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this pull request over 1 year ago

OpenMS Tutorial - Suggested Changes & Issues

github.com/OpenMS/OpenMS-docs - carobarry opened this issue over 1 year ago

Duplicate introduction!

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this issue over 1 year ago

[FIX] blacken and dozens of other warnings. Also parellelize build.

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this pull request over 1 year ago

[FIX] Merge Residues of same modification

github.com/OpenMS/OpenMS - Amit0617 opened this pull request over 1 year ago

Link to tools in the background sections

github.com/OpenMS/OpenMS-docs - jpfeuffer opened this issue over 1 year ago

Documentation redirects added

github.com/OpenMS/OpenMS-website - rahul799 opened this pull request over 1 year ago

From form: Processing CSV files

github.com/OpenMS/OpenMS-docs - rahul799 opened this issue over 1 year ago

Overwritten/aliased classes not documented correctly

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this issue over 1 year ago

Remove set-output from actions

github.com/OpenMS/contrib - poshul opened this pull request over 1 year ago

Update news.md

github.com/OpenMS/OpenMS-website - tjeerdijk opened this pull request over 1 year ago

fixes #177

github.com/OpenMS/autowrap - jpfeuffer opened this pull request over 1 year ago

release-autowrap.yaml need updating

github.com/OpenMS/autowrap - poshul opened this issue over 1 year ago

From form: The webpage for the MetaProSIP will not open and I cannot figure out how to operate the software with openMS

github.com/OpenMS/OpenMS-website - rahul799 opened this issue over 1 year ago

Deploy docker image (ubuntu) to ghcr.io uses the deprecated "set-output" command

github.com/OpenMS/contrib - poshul opened this issue almost 2 years ago

Lychee fails during CI action

github.com/OpenMS/OpenMS-docs - poshul opened this issue almost 2 years ago

Copying of logs not working anymore after infra update

github.com/OpenMS/usage_plots - jpfeuffer opened this issue almost 2 years ago

Update vcredist2010

github.com/OpenMS/THIRDPARTY - poshul opened this pull request almost 2 years ago

Update MSGF+ to v20230112

github.com/OpenMS/THIRDPARTY - bernt-matthias opened this pull request almost 2 years ago

Autoapply reformating in CI?

github.com/OpenMS/autowrap - jpfeuffer opened this issue almost 2 years ago

A few typing fixes

github.com/OpenMS/autowrap - jpfeuffer opened this pull request almost 2 years ago

Try to add real BooleanConverter

github.com/OpenMS/autowrap - jpfeuffer opened this pull request almost 2 years ago

ConversionProviders for libcpp_container[libcpp_*_string, *] not picked up -> Careful with typing

github.com/OpenMS/autowrap - jpfeuffer opened this issue almost 2 years ago

Remove all python2 special handling cases

github.com/OpenMS/autowrap - jpfeuffer opened this issue almost 2 years ago

How to handle unnamed parameters in typestubs

github.com/OpenMS/autowrap - jpfeuffer opened this issue almost 2 years ago

General Remarks

github.com/OpenMS/OpenMS-website - matteopilz opened this pull request almost 2 years ago

Changed main page, installation and community

github.com/OpenMS/OpenMS-website - matteopilz opened this pull request almost 2 years ago

Add copy button in code cells

github.com/OpenMS/OpenMS-website - matteopilz opened this issue almost 2 years ago

Update apidoc.rst

github.com/OpenMS/pyopenms-docs - poshul opened this pull request almost 2 years ago

Move to conda

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this pull request almost 2 years ago

Updated FLASHDeconv

github.com/OpenMS/OpenMS - JeeH-K opened this pull request almost 2 years ago

JS errors

github.com/OpenMS/OpenMS-docs - jpfeuffer opened this issue almost 2 years ago

CoinOR config.guess not able to guess for newer OSes

github.com/OpenMS/contrib - jpfeuffer opened this issue almost 2 years ago

Piwik scripts added

github.com/OpenMS/OpenMS-docs - rahul799 opened this pull request almost 2 years ago

Try updating to sphinx 5 or even 6 beta

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this issue almost 2 years ago

Do not use deprecated method

github.com/OpenMS/OpenMS-docs - jpfeuffer opened this pull request almost 2 years ago

Add Piwik analytics to other websites too

github.com/OpenMS/OpenMS-website - rahul799 opened this issue almost 2 years ago

Zoom in the pictures on click

github.com/OpenMS/OpenMS-website - rahul799 opened this issue almost 2 years ago

New background

github.com/OpenMS/OpenMS-docs - greengypsy opened this pull request almost 2 years ago

[DOC] Added Mathematical Notation & few changes

github.com/OpenMS/OpenMS-docs - Telomelonia opened this pull request almost 2 years ago

Converted iterator for loops to range for loops (initial)

github.com/OpenMS/OpenMS - AmandaWein opened this pull request almost 2 years ago

Applications page (https://openms.github.io/applications/)

github.com/OpenMS/OpenMS-website - matteopilz opened this issue almost 2 years ago

General remarks

github.com/OpenMS/OpenMS-website - matteopilz opened this issue almost 2 years ago

Update link-external-code-to-openms.md

github.com/OpenMS/OpenMS-docs - Ayesha-Feroz opened this pull request almost 2 years ago

Update entry-points-to-openms.md

github.com/OpenMS/OpenMS-docs - Ayesha-Feroz opened this pull request almost 2 years ago

Update index.rst

github.com/OpenMS/OpenMS-docs - Ayesha-Feroz opened this pull request almost 2 years ago

Update installation-on-windows.md

github.com/OpenMS/OpenMS-docs - Arslan-Siraj opened this pull request almost 2 years ago

Update developer-faq.md

github.com/OpenMS/OpenMS-docs - Ayesha-Feroz opened this pull request almost 2 years ago

Do not use zstd/lzma in boost

github.com/OpenMS/contrib - jpfeuffer opened this pull request almost 2 years ago

Cleanup!!

github.com/OpenMS/dockerfiles - jpfeuffer opened this issue almost 2 years ago

modified: NuXLProcessingNode

github.com/OpenMS/PDCommunityNodes - Sharmaditi291 opened this pull request almost 2 years ago

Peak1D and Peak2D: change intensity type to double as well

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request almost 2 years ago

update to sirius 5.6.3 snapshot

github.com/OpenMS/THIRDPARTY - axelwalter opened this pull request almost 2 years ago

Speedup Ion Mobility OpenSwath Processing

github.com/OpenMS/OpenMS - jcharkow opened this pull request almost 2 years ago

modified: NuXLProcessingNode.cs

github.com/OpenMS/PDCommunityNodes - Sharmaditi291 opened this pull request almost 2 years ago

Updated to PD3.0 with changes

github.com/OpenMS/PDCommunityNodes - Sharmaditi291 opened this pull request almost 2 years ago

Use Prebuilt contrib's for CI

github.com/OpenMS/OpenMS - poshul opened this issue almost 2 years ago

update to sirius 5.6.2

github.com/OpenMS/THIRDPARTY - axelwalter opened this pull request almost 2 years ago

update to sirius 5.6.1 official release

github.com/OpenMS/THIRDPARTY - axelwalter opened this pull request almost 2 years ago

Create OMSPrerequisities.xml

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request almost 2 years ago

TOPPView is not opening on macOS 12.6 (M1 Pro cpu)

github.com/OpenMS/OpenMS - lfnothias opened this issue almost 2 years ago

Update README.md

github.com/OpenMS/.github - rahul799 opened this pull request almost 2 years ago

Update docstrings for overloads in pyx using autodoc syntax.

github.com/OpenMS/autowrap - jpfeuffer opened this pull request almost 2 years ago

correct regex for SIRIUS version check

github.com/OpenMS/build-scripts - axelwalter opened this pull request almost 2 years ago

Update deploy-manylinux-docker.yml

github.com/OpenMS/contrib - poshul opened this pull request almost 2 years ago

Update release-autowrap.yaml

github.com/OpenMS/autowrap - poshul opened this pull request almost 2 years ago

initial support for export of peak annotations

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request almost 2 years ago

enable SIRIUS tests

github.com/OpenMS/build-scripts - axelwalter opened this pull request almost 2 years ago

update to sirius 5.6.1

github.com/OpenMS/THIRDPARTY - axelwalter opened this pull request almost 2 years ago

OpenMS Tutorial: Missing file and mismatched files

github.com/OpenMS/OpenMS-docs - carobarry opened this issue almost 2 years ago

Lots of warnings and errors in sphinx autodoc

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this issue almost 2 years ago

Escape underscores and other special sphinx characters

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this issue almost 2 years ago

modify build.properties for packaging after dep update

github.com/OpenMS/de.openms.knime - jpfeuffer opened this pull request almost 2 years ago

gitignore completely ignored my new libs

github.com/OpenMS/de.openms.knime - jpfeuffer opened this pull request almost 2 years ago

Do not use list as pair replacement, since list cannot be heterogenously typed

github.com/OpenMS/autowrap - jpfeuffer opened this issue almost 2 years ago