OpenMS issues | Ecosyste.ms: OpenCollective

[Fix] Incorrect Community Footer Link

github.com/OpenMS/OpenMS-website - matteopilz opened this pull request over 1 year ago

Help request form is in a weird language and uses a personal github account for posting issues

github.com/OpenMS/OpenMS-website - jpfeuffer opened this issue over 1 year ago

Community footer page leads to nowhere

github.com/OpenMS/OpenMS-website - jpfeuffer opened this issue over 1 year ago

Privacy policy does not make sense

github.com/OpenMS/OpenMS-website - jpfeuffer opened this issue over 1 year ago

Mail form in the footer leads to numpy signup -.-

github.com/OpenMS/OpenMS-website - jpfeuffer opened this issue over 1 year ago

Help page (footer) and Community->Communication are basically the same page

github.com/OpenMS/OpenMS-website - jpfeuffer opened this issue over 1 year ago

Publication links not working

github.com/OpenMS/OpenMS-website - jpfeuffer opened this issue over 1 year ago

Bump src/pyOpenMS/pyopenms-docs from `a583c73` to `b238a66`

github.com/OpenMS/OpenMS - dependabot[bot] opened this pull request over 1 year ago

add summary on Dev meeting

github.com/OpenMS/OpenMS-website - timosachsenberg opened this issue over 1 year ago

Add summary on dev meeting

github.com/OpenMS/OpenMS-website - timosachsenberg opened this issue over 1 year ago

Update postBuild to use or new nightly pyopenms name scheme

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this pull request over 1 year ago

modify icon bar

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this pull request over 1 year ago

text for userguide subpage and uncollapse toc

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this pull request over 1 year ago

interactive_plots.rst binder doesn't work because it runs out of memory

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue over 1 year ago

create executable mokapot packages for linux, windows, mac

github.com/OpenMS/THIRDPARTY - timosachsenberg opened this issue over 1 year ago

Add files via upload

github.com/OpenMS/THIRDPARTY - timosachsenberg opened this pull request over 1 year ago

Pydata theme notemplates

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this pull request over 1 year ago

update contributors

github.com/OpenMS/OpenMS-docs - cbielow opened this pull request over 1 year ago

Try pandoc 3.x for generating ipynbs

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this pull request over 1 year ago

Fix pphires

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request over 1 year ago

Adapt docstring generation regarding inheritance

github.com/OpenMS/autowrap - jpfeuffer opened this issue over 1 year ago

Fix some code blocks

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this pull request over 1 year ago

evaluate the panel framework for more advanced web apps

github.com/OpenMS/OpenMS - timosachsenberg opened this issue over 1 year ago

Go through OpenMS 3.0 paper and fill in information

github.com/OpenMS/OpenMS - timosachsenberg opened this issue over 1 year ago

master thesis to apply some implementations/ideas from sage-ms

github.com/OpenMS/OpenMS - timosachsenberg opened this issue over 1 year ago

Try one last redirect

github.com/OpenMS/OpenMS-website - jpfeuffer opened this pull request over 1 year ago

Large restructure of docs

github.com/OpenMS/OpenMS-docs - jpfeuffer opened this pull request over 1 year ago

CometAdapter pin file label always 1

github.com/OpenMS/OpenMS - jonasscheid opened this issue over 1 year ago

wrong URL for docs

github.com/OpenMS/OpenMS-website - jpfeuffer opened this pull request over 1 year ago

Support for consensus maps in .oms (SQLite) files

github.com/OpenMS/OpenMS - hendrikweisser opened this pull request over 1 year ago

Update Publications

github.com/OpenMS/OpenMS-website - github-actions[bot] opened this pull request over 1 year ago

add news item about summary of 2022 dev meeting.

github.com/OpenMS/OpenMS-website - jpfeuffer opened this pull request over 1 year ago

Try suggestion from netlify: Update _redirects

github.com/OpenMS/OpenMS-website - jpfeuffer opened this pull request over 1 year ago

Update requirements.txt

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this pull request over 1 year ago

Update export to pandas dataframes file - solves warnings during notebook generation

github.com/OpenMS/pyopenms-docs - axelwalter opened this pull request over 1 year ago

Action to update publications list

github.com/OpenMS/OpenMS-website - axelwalter opened this pull request over 1 year ago

added force flag (!) to status

github.com/OpenMS/OpenMS-website - tjeerdijk opened this pull request over 1 year ago

Add netlify badge

github.com/OpenMS/OpenMS-website - jpfeuffer opened this pull request over 1 year ago

simplify paths to static resources

github.com/OpenMS/OpenMS-docs - jpfeuffer opened this pull request over 1 year ago

M2 chip: successfully built pyopenms but failed all tests. Process are killed when importing pyopenms

github.com/OpenMS/OpenMS - YuanyeChi opened this issue over 1 year ago

Previous docker containers do not exist?

github.com/OpenMS/OpenMS - jcharkow opened this issue over 1 year ago

fix-redirects

github.com/OpenMS/OpenMS-website - tjeerdijk opened this pull request over 1 year ago

SiriusAdapter terminal output (email and password reveal)

github.com/OpenMS/OpenMS - eeko-kon opened this issue over 1 year ago

Memory errors when exporting GNPS files

github.com/OpenMS/pyopenms-docs - wkindschuh opened this issue over 1 year ago

Sage MS

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request over 1 year ago

Update wrapping_workflows_new_classes.rst

github.com/OpenMS/pyopenms-docs - Ayesha-Feroz opened this pull request over 1 year ago

Verbosity level

github.com/OpenMS/pyopenms-docs - PierreSnell opened this issue over 1 year ago

Feature: Get variance from different experiements.

github.com/OpenMS/pyopenms-docs - PierreSnell opened this issue over 1 year ago

Fix redirects

github.com/OpenMS/OpenMS-website - rahul799 opened this pull request over 1 year ago

Pytorch

github.com/OpenMS/OpenMS - Arslan-Siraj opened this pull request over 1 year ago

Modified PeakPickerHiRes to address issue #5687

github.com/OpenMS/OpenMS - alhigaylan opened this pull request over 1 year ago

[FIX] comment parsing once and for all

github.com/OpenMS/autowrap - jpfeuffer opened this pull request over 1 year ago

genericized file loader where possible

github.com/OpenMS/OpenMS - poshul opened this pull request over 1 year ago

Sign NSIS package (windows installer)

github.com/OpenMS/OpenMS - timosachsenberg opened this issue over 1 year ago

Update ranges if spectra/experiments are read from file

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request over 1 year ago

CDASH certificate error

github.com/OpenMS/OpenMS - timosachsenberg opened this issue over 1 year ago

[FEATURE][PYOMS] try adding some wrapnogil

github.com/OpenMS/OpenMS - jpfeuffer opened this pull request over 1 year ago

Potential useful information to review and add to the readthedocs page - from learning unit 11

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue over 1 year ago

Potential useful information to review and add to the readthedocs page - from learning unit 10

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue over 1 year ago

Potential useful information to review and add to the readthedocs page - from learning unit 9

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue over 1 year ago

Potential useful information to review and add to the readthedocs page - from learning unit 7

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue over 1 year ago

Potential useful information to review and add to the readthedocs page - from learning unit 6

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue over 1 year ago

Potential useful information to review and add to the readthedocs page - from learning unit 5

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue over 1 year ago

Potential useful information to review and add to the readthedocs page - from learning unit 4

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue over 1 year ago

Potential useful information to review and add to the readthedocs page - from learning unit 3

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue over 1 year ago

Potential useful information to review and add to the readthedocs page - from learning unit 2

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue over 1 year ago

https://openms.readthedocs.io/en/latest/develop-with-openms/openms-core-cplusplus-library.html is empty

github.com/OpenMS/OpenMS-docs - timosachsenberg opened this issue over 1 year ago

Timosachsenberg patch 2

github.com/OpenMS/contrib - timosachsenberg opened this pull request over 1 year ago

Fix/deploy docker

github.com/OpenMS/contrib - timosachsenberg opened this pull request over 1 year ago

Fix/deploy docker

github.com/OpenMS/contrib - timosachsenberg opened this pull request over 1 year ago

Add information on hyperscore from one of our past lectures

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue over 1 year ago

Opening an issue should also give possibility to do a feature request / ask for additional documentation.

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue over 1 year ago

checkout repo to get context

github.com/OpenMS/contrib - timosachsenberg opened this pull request over 1 year ago

Docker actions broken after moving dockerfiles

github.com/OpenMS/contrib - jpfeuffer opened this issue over 1 year ago

Name issue nightly pypi

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this issue over 1 year ago

Update _redirects

github.com/OpenMS/OpenMS-website - poshul opened this pull request over 1 year ago

Automatically adapt information at website build time or display time

github.com/OpenMS/OpenMS-website - jpfeuffer opened this issue over 1 year ago

[ByGHAction] Updated OpenMS package version numbers

github.com/OpenMS/OpenMS - github-actions[bot] opened this pull request over 1 year ago

Update comet executable to 2023 version

github.com/OpenMS/THIRDPARTY - jonasscheid opened this pull request over 1 year ago

Update comet.exe

github.com/OpenMS/THIRDPARTY - jonasscheid opened this issue over 1 year ago

Softwipe results -- with action items for everybody who wants to fix stuff

github.com/OpenMS/OpenMS - cbielow opened this issue over 1 year ago

formula notation not correct

github.com/OpenMS/pyopenms-docs - timosachsenberg opened this issue over 1 year ago

Error opening stream: HTTP 404: Not Found (Kernel does not exist:

github.com/OpenMS/cling-notebooks - tapaswenipathak opened this issue over 1 year ago

Add base for c++ xeus-cling notebooks to run google collab, mybinder.org

github.com/OpenMS/cling-notebooks - tapaswenipathak opened this pull request over 1 year ago

Try making pandas and matplotlib optional

github.com/OpenMS/OpenMS - jpfeuffer opened this pull request over 1 year ago

:py:class: references look weird in ipynb notebooks

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this issue over 1 year ago

Re-organize quick start guide locations

github.com/OpenMS/OpenMS-docs - axelwalter opened this pull request over 1 year ago

OpenSwathAssayGenerator check for duplicate transitions

github.com/OpenMS/OpenMS - jcharkow opened this issue over 1 year ago

Overhaul archive

github.com/OpenMS/OpenMS - jpfeuffer opened this issue over 1 year ago

remove OpenMS checkout from contrib

github.com/OpenMS/contrib - timosachsenberg opened this pull request over 1 year ago

Create new logo

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this issue over 1 year ago

Feat/hdf5-blosc

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request over 1 year ago

[FEATURE] First try with pydata theme

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this pull request over 1 year ago

Generate ipynb on-the-fly with postBuild

github.com/OpenMS/pyopenms-docs - jpfeuffer opened this issue over 1 year ago

remove from dockerfile repo

github.com/OpenMS/dockerfiles - timosachsenberg opened this pull request over 1 year ago

update manylinux action

github.com/OpenMS/contrib - timosachsenberg opened this pull request over 1 year ago

re-added requirements processing

github.com/OpenMS/pyopenms-docs - poshul opened this pull request over 1 year ago

have versioned docs. I.e. a nice visible drop-down on the web interface such that people can switch from nightly to release

github.com/OpenMS/pyopenms-docs - poshul opened this issue over 1 year ago

Surround USB Stick specific parts with tabs in User tutorial

github.com/OpenMS/OpenMS-docs - jpfeuffer opened this issue over 1 year ago

Rewrite file paths in User tutorial

github.com/OpenMS/OpenMS-docs - jpfeuffer opened this issue over 1 year ago