OpenMS issues | Ecosyste.ms: OpenCollective

update UmetaFlow

github.com/OpenMS/streamlit-deployment - axelwalter opened this pull request 4 days ago

Update quick-facts.html with new version

github.com/OpenMS/OpenMS-website - poshul opened this pull request 4 days ago

Update UmetaFlow submodule

github.com/OpenMS/streamlit-deployment - axelwalter opened this pull request 4 days ago

Bump umetaflow-gui from `313168a` to `a6ccc18`

github.com/OpenMS/streamlit-deployment - dependabot[bot] opened this pull request 5 days ago

Bump openms-streamlit-template from `a540f6b` to `fa63757`

github.com/OpenMS/streamlit-deployment - dependabot[bot] opened this pull request 5 days ago

Bump openms-streamlit-template from `a540f6b` to `a1652f0`

github.com/OpenMS/streamlit-deployment - dependabot[bot] opened this pull request 8 days ago

Bump openms-streamlit-template from `a540f6b` to `c7b7689`

github.com/OpenMS/streamlit-deployment - dependabot[bot] opened this pull request 9 days ago

fix for CI on mac x86

github.com/OpenMS/OpenMS - poshul opened this pull request 9 days ago

expose eigen downstream

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request 9 days ago

make setup.py check for AVX support

github.com/OpenMS/OpenMS - poshul opened this pull request 9 days ago

Fix remove old pyds

github.com/OpenMS/OpenMS - poshul opened this pull request 10 days ago

Update pyopenms-wheels.yml

github.com/OpenMS/OpenMS - poshul opened this pull request 10 days ago

PyOpenMS 3.2.0 build fails on bioconda due to Eigen3 not found

github.com/OpenMS/OpenMS - jonasscheid opened this issue 10 days ago

Spectrum plot optimization

github.com/OpenMS/pyopenms_viz - axelwalter opened this pull request 10 days ago

Bokeh LinePlot linewidth not being set properly

github.com/OpenMS/pyopenms_viz - jcharkow opened this issue 10 days ago

FLASHDeconv msAlign Export

github.com/OpenMS/OpenMS - jgpavek opened this issue 10 days ago

feature: compute peak apex

github.com/OpenMS/pyopenms_viz - jcharkow opened this pull request 10 days ago

Decoy phosho added to unimod.xml

github.com/OpenMS/OpenMS - ypriverol opened this pull request 10 days ago

Applied bug fixes, full workflow runs through now

github.com/OpenMS/streamlit-deployment - JohannesvKL opened this pull request 10 days ago

Release/3.2.0

github.com/OpenMS/OpenMS - poshul opened this pull request 10 days ago

Updates unimod and adds back custom mods

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request 11 days ago

better variable names

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request 11 days ago

Wheel action tries to delete wrong libraries

github.com/OpenMS/OpenMS - jpfeuffer opened this issue 11 days ago

Python wheels still/again packaging dlls for multiple versions

github.com/OpenMS/OpenMS - jpfeuffer opened this issue 11 days ago

Update unimod.xml and unimod.obo to "12:08:2024 11:33"

github.com/OpenMS/OpenMS - fcyu opened this pull request 11 days ago

merge back changes from release branch

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request 11 days ago

Docs: Add Spyogenes multiplot

github.com/OpenMS/pyopenms_viz - jcharkow opened this pull request 11 days ago

Retention Time Correction

github.com/OpenMS/OpenMS - LeonSaal opened this issue 11 days ago

Untargeted Metabolomics for Direct Injection

github.com/OpenMS/OpenMS - felipe-mansoldo opened this issue 14 days ago

Updated for loop

github.com/OpenMS/OpenMS - sa-shaheer-ali opened this pull request 14 days ago

add isobaric correction defaults for tmt6plex and 11plex

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request 14 days ago

Deployment produced new bugs, fixed now

github.com/OpenMS/streamlit-deployment - JohannesvKL opened this pull request 15 days ago

Adding plt.show()

github.com/OpenMS/pyopenms-docs - r-sayar opened this pull request 15 days ago

Updated PTMScanner, connection works locally now + minor cosmetic changes to pages

github.com/OpenMS/streamlit-deployment - JohannesvKL opened this pull request 15 days ago

Dockerfile updated, connection now possible + minor issue fixed

github.com/OpenMS/streamlit-template - JohannesvKL opened this pull request 15 days ago

Error when loading pyOpenMS libraries!

github.com/OpenMS/pyopenms-docs - LCLazari opened this issue 16 days ago

Bump PTMScanner from `ab2f177` to `7e239bc`

github.com/OpenMS/streamlit-deployment - dependabot[bot] opened this pull request 17 days ago

bump FV and template

github.com/OpenMS/streamlit-deployment - t0mdavid-m opened this pull request 17 days ago

bump FV and template

github.com/OpenMS/streamlit-deployment - t0mdavid-m opened this pull request 17 days ago

ImportError with pyOpenMS version 3.2.0 on Windows when PyArrow was imported

github.com/OpenMS/OpenMS - RalfG opened this issue 17 days ago

Switch from Mambaforge to Miniforge

github.com/OpenMS/streamlit-template - t0mdavid-m opened this pull request 17 days ago

fix scan number extraction for merged spectra

github.com/OpenMS/OpenMS - t0mdavid-m opened this pull request 18 days ago

Adding PTMScanner to the repository

github.com/OpenMS/streamlit-deployment - JohannesvKL opened this pull request 18 days ago

Add annotation labels for 3D plots

github.com/OpenMS/pyopenms_viz - t0mdavid-m opened this pull request 20 days ago

Patch/html annotation bug

github.com/OpenMS/pyopenms_viz - singjc opened this pull request 21 days ago

Add Carousel to the webapps section

github.com/OpenMS/OpenMS-website - hjn0415a opened this pull request 21 days ago

Support import/export of configurations for Workflows

github.com/OpenMS/streamlit-template - t0mdavid-m opened this issue 21 days ago

Add Carousel to the webapps section

github.com/OpenMS/OpenMS-website - hjn0415a opened this pull request 22 days ago

update FV

github.com/OpenMS/streamlit-deployment - t0mdavid-m opened this pull request 22 days ago

Add wildcard redirect for webapps

github.com/OpenMS/OpenMS-website - t0mdavid-m opened this pull request 22 days ago

Major Code Refactor: Clean Up Parameters

github.com/OpenMS/pyopenms_viz - jcharkow opened this pull request 22 days ago

Add Tests for plotting

github.com/OpenMS/pyopenms_viz - jcharkow opened this pull request 22 days ago

DONT MERGE Pr 7577

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request 22 days ago

updating CometAdapter with new parameters

github.com/OpenMS/OpenMS - MaLLLiYA opened this pull request 23 days ago

Bump openms-streamlit-template from `353e039` to `28e4fbe`

github.com/OpenMS/streamlit-deployment - dependabot[bot] opened this pull request 24 days ago

How to extract isotope EIC when using FeatureFinder () ?

github.com/OpenMS/pyopenms-docs - grimace9527 opened this issue 24 days ago

Can't store peptide identification with spectrum to mzml file using pyopenms 3.1.0

github.com/OpenMS/OpenMS - grimace9527 opened this issue 24 days ago

Patch/warn ungroupped new

github.com/OpenMS/pyopenms_viz - jcharkow opened this pull request 24 days ago

PLOTLY Spectrum Annotations not rendering properly

github.com/OpenMS/pyopenms_viz - jcharkow opened this issue 24 days ago

Patch/warn ungroupped

github.com/OpenMS/pyopenms_viz - jcharkow opened this pull request 24 days ago

Revert "Feature: Add option to aggregate dataframe before plotting"

github.com/OpenMS/pyopenms_viz - jcharkow opened this pull request 24 days ago

add redirects for WebApps

github.com/OpenMS/OpenMS-website - t0mdavid-m opened this pull request 24 days ago

Show and highlight web apps on OpenMS website

github.com/OpenMS/OpenMS-website - JKVISION1101 opened this pull request 25 days ago

remove explcit TOC

github.com/OpenMS/pyopenms_viz - jcharkow opened this pull request 25 days ago

Patch/annotations with select nans

github.com/OpenMS/pyopenms_viz - singjc opened this pull request 25 days ago

Docs first version

github.com/OpenMS/pyopenms_viz - jcharkow opened this pull request 25 days ago

Update FeatureMap.pxd

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request 25 days ago

Sequence plot

github.com/OpenMS/pyopenms_viz - jcharkow opened this pull request 25 days ago

Plot peptide sequence with matched fragments indicated

github.com/OpenMS/pyopenms_viz - bittremieux opened this pull request 26 days ago

FeatureFinderMetabo: param to toggle reporting smoothed intensities

github.com/OpenMS/OpenMS - rickhelmus opened this pull request 27 days ago

Bump src/pyOpenMS/pyopenms-docs from `9875a9e` to `63fdab2`

github.com/OpenMS/OpenMS - dependabot[bot] opened this pull request 28 days ago

Create release3.2.md

github.com/OpenMS/OpenMS-website - poshul opened this pull request 29 days ago

Bump umetaflow-gui from `092d0e9` to `313168a`

github.com/OpenMS/streamlit-deployment - dependabot[bot] opened this pull request 30 days ago

Update COMET to the latest version

github.com/OpenMS/OpenMS - MaLLLiYA opened this issue 30 days ago

OpenMS 3.2 Dockerfiles

github.com/OpenMS/OpenMS - prvst opened this issue about 1 month ago

update citation info to OpenMS 3 for GUI apps

github.com/OpenMS/OpenMS - cbielow opened this pull request about 1 month ago

Merge latest release into develop

github.com/OpenMS/OpenMS - github-actions[bot] opened this pull request about 1 month ago

Release announcement for 3.2

github.com/OpenMS/OpenMS-website - openmsgithubapp[bot] opened this pull request about 1 month ago

DRAFT - Add Documentation

github.com/OpenMS/pyopenms_viz - jcharkow opened this pull request about 1 month ago

[ByGHAction] Updated OpenMS package version numbers

github.com/OpenMS/OpenMS - github-actions[bot] opened this pull request about 1 month ago

Add Documentation

github.com/OpenMS/pyopenms_viz - jcharkow opened this pull request about 1 month ago

make copyright year dynamic

github.com/OpenMS/pyopenms-docs - jcharkow opened this pull request about 1 month ago

Update/OpenSwathWorkflow IonMobilityScoring Mobilogram Datastructure

github.com/OpenMS/OpenMS - singjc opened this pull request about 1 month ago

Bump THIRDPARTY from `d6594eb` to `6c4aff6`

github.com/OpenMS/OpenMS - dependabot[bot] opened this pull request about 1 month ago

TOPPView: open idXML in same layer as underlying data, if raw mzML is detected …

github.com/OpenMS/OpenMS - cbielow opened this pull request about 1 month ago

Updating Sage Binaries

github.com/OpenMS/THIRDPARTY - JohannesvKL opened this pull request about 1 month ago

Defining more enzymes in OpenMS Comet and SAGE adaptor

github.com/OpenMS/OpenMS - MaLLLiYA opened this pull request about 1 month ago

Bump nuxl-app from `3154286` to `0834b7a`

github.com/OpenMS/streamlit-deployment - dependabot[bot] opened this pull request about 1 month ago

FragmentIndex search engine

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request about 1 month ago

remove: python 3.9 from project toml

github.com/OpenMS/pyopenms_viz - singjc opened this pull request about 1 month ago

Error loading ms_matplotlib backend with python 3.9

github.com/OpenMS/pyopenms_viz - huhehaotecrystal opened this issue about 1 month ago

Feature: Add option to aggregate dataframe before plotting

github.com/OpenMS/pyopenms_viz - jcharkow opened this pull request about 1 month ago

FR: report non-smoothed intensities with FFM

github.com/OpenMS/OpenMS - rickhelmus opened this issue about 1 month ago

Bottom up fiid [do not merge]

github.com/OpenMS/OpenMS - timosachsenberg opened this pull request about 1 month ago

Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - poshul opened this pull request about 1 month ago

Parse IM in CometAdapter

github.com/OpenMS/OpenMS - jonasscheid opened this issue about 1 month ago

change binning aggregation from "mean" to "sum"

github.com/OpenMS/pyopenms_viz - jcharkow opened this pull request about 1 month ago

Bump src/pyOpenMS/pyopenms-docs from `7628c88` to `63fdab2`

github.com/OpenMS/OpenMS - dependabot[bot] opened this pull request about 1 month ago

Updating SageAdapter with new functionality + compatibility with new Sage versions

github.com/OpenMS/OpenMS - JohannesvKL opened this pull request about 1 month ago

Tutorials

github.com/OpenMS/pyopenms_viz - singjc opened this pull request about 1 month ago