Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

OpenMS

Make mass spectrometry analysis accessible to anyone
Collective - Host: opensource - https://opencollective.com/openms - Website: https://openms.org - Code: https://github.com/openms

reordering complete

github.com/OpenMS/OpenMS - 4c5f299a0e0a37a17f23e1006760a6ee7699d40e authored about 1 year ago by Chris Bielow <[email protected]>
revert removal of Fido files because they are used in other tests

github.com/OpenMS/OpenMS - ac85cdb0b0fbff5ccd8fa96e4e088c1ee5e16a0f authored about 1 year ago by Timo Sachsenberg <[email protected]>
Merge remote-tracking branch 'origin/develop' into release/3.1.0

github.com/OpenMS/OpenMS - 0c167784aba56132366b46402caa80c8fb8e085d authored about 1 year ago by Timo Sachsenberg <[email protected]>
minor fixes and comments

github.com/OpenMS/OpenMS - 0951cbf67930c73cd84f409d3be8c5407589d513 authored about 1 year ago by Timo Sachsenberg <[email protected]>
remove Fido leftovers

github.com/OpenMS/OpenMS - 8093dfed9ffbca867d620c33fda32d69909fd269 authored about 1 year ago by Timo Sachsenberg <[email protected]>
Read RT back in minutes in percolator in file (#7131)

* Read RT back in minutes in percolator in file

* fix RT in idXML

github.com/OpenMS/OpenMS - 0b6c4dbe9b8a651c6030fb6c9f7a2d0ac613d148 authored about 1 year ago by Timo Sachsenberg <[email protected]>
Update CHANGELOG

github.com/OpenMS/OpenMS - feb784fd65c1a3b1443bbc8754ae25215f6d80cd authored about 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #6 from axelwalter/main

Update readme with detailed instructions

github.com/OpenMS/streamlit-deployment - 72a1f2f537aa47536c6cbbfb2a7491b27b21f224 authored about 1 year ago by Timo Sachsenberg <[email protected]>
update readme

github.com/OpenMS/streamlit-deployment - c3abcd1998875eda1d510fb41d7926e5075aa7f1 authored about 1 year ago by axelwalter <[email protected]>
update submodules

github.com/OpenMS/streamlit-deployment - 820c191213be56e2e17789bd827bafe945a6bec2 authored about 1 year ago by axelwalter <[email protected]>
Merge pull request #36 from axelwalter/main

Add note to captcha to disable ad blocker

github.com/OpenMS/streamlit-template - f8b3cfa5113217add9bdc760b0cd9bf628375cce authored about 1 year ago by axelwalter <[email protected]>
add note to captcha to disable ad blocker

github.com/OpenMS/streamlit-template - fcb7436161ec64a6e0917b025103e6cd6c1aa170 authored about 1 year ago by axelwalter <[email protected]>
Merge pull request #35 from axelwalter/main

Update readme

github.com/OpenMS/streamlit-template - 1c9d7c07a2b6d6eeeae518e749874026d8af329e authored about 1 year ago by axelwalter <[email protected]>
Update README

github.com/OpenMS/streamlit-template - 722b802553313b35caedc37d484d547c48b76c1e authored about 1 year ago by axelwalter <[email protected]>
put captcha in form

github.com/OpenMS/streamlit-template - 3ff13ec0a556339e168c37b04b7b6dbbfdbd5d63 authored about 1 year ago by axelwalter <[email protected]>
highlight download for windows button

github.com/OpenMS/streamlit-template - f97359e02b00fe6dbb50836886b6aec42d29cc95 authored about 1 year ago by axelwalter <[email protected]>
Update CHANGELOG_PARAMS

github.com/OpenMS/OpenMS - d2f528a6792404697316ae66b2c8263bd09a0773 authored about 1 year ago by Timo Sachsenberg <[email protected]>
[mzIdentML] fall back to name element for DatabaseName

fixes #7099

github.com/OpenMS/OpenMS - e157a0711e7cc1ebd9fc3101730fab76bc95a4b6 authored about 1 year ago by Julianus Pfeuffer <[email protected]>
start fixing categories...

github.com/OpenMS/OpenMS - e1e2b0c96f0f76d299079150bc6f51bcedd47e77 authored about 1 year ago by Chris Bielow <[email protected]>
fix category

github.com/OpenMS/OpenMS - 1fb2ca916660c504e14384fc39a1cf53f5a3f1b2 authored about 1 year ago by Chris Bielow <[email protected]>
Update CHANGELOG

github.com/OpenMS/OpenMS - 8a4e14c72576083dddc3ae3093b252fa6456d237 authored about 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #7122 from OpenMS/poshul-patch-1

Update INIUpdater_1_noupdate.toppas to output correct version

github.com/OpenMS/OpenMS - fc0d8746ca915aed1e7b6f980bc986d378f531fc authored about 1 year ago by Samuel Wein <[email protected]>
Merge branch 'develop' into poshul-patch-1

github.com/OpenMS/OpenMS - 8a36dcd50800935aa2e3d87943e876df1ce11636 authored about 1 year ago by Samuel Wein <[email protected]>
Update CHANGELOG (#7107)

* Update CHANGELOG

* Update CHANGELOG

* Update CHANGELOG

* Update CHANGELOG

github.com/OpenMS/OpenMS - 69d650f784be7b379c186c1026f5099bf153a780 authored about 1 year ago by Timo Sachsenberg <[email protected]>
Bump contrib from `04d64c6` to `69e61f2` (#7075)

Bumps [contrib](https://github.com/OpenMS/contrib) from `04d64c6` to `69e61f2`.
- [Commits](htt...

github.com/OpenMS/OpenMS - ee4b381715c9530c30d9c58fb48e67a16b7d60f5 authored about 1 year ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
add column for area output (#7115)

Co-authored-by: timosachsenberg <[email protected]>

github.com/OpenMS/OpenMS - c30f67210930a1f31f096b4072de63732cfd2ad1 authored about 1 year ago by Timo Sachsenberg <[email protected]>
removed unstable (SVM) tests (#7121)

Co-authored-by: timosachsenberg <[email protected]>

github.com/OpenMS/OpenMS - e52b5f9584f7f25ae545b2b1dad64c8a107e7720 authored about 1 year ago by Timo Sachsenberg <[email protected]>
Update INIUpdater_1_noupdate.toppas to output correct version

github.com/OpenMS/OpenMS - c206ea178661e6b9bedd9ace6190d0c816ddf589 authored about 1 year ago by Samuel Wein <[email protected]>
remove uniqueToProt from mascot psm features (#7120)

github.com/OpenMS/OpenMS - 4e6c032817bfc05adfa4752da3a4e0cd21f8bbe6 authored about 1 year ago by Jonas Scheid <[email protected]>
Add some glossary terms (#213)

* fix some links and expand glossary

github.com/OpenMS/OpenMS-docs - 99a6ab58ed142f0c5bacbf6aacc1ee63308aee29 authored about 1 year ago by Chris Bielow <[email protected]>
Relink Developer Quickstart Guide (#212)

* relink developer quickstart guide

github.com/OpenMS/OpenMS-docs - 92940becfb087db5a8d56a4014b3b3840b26e9e1 authored about 1 year ago by Matteo Pilz <[email protected]>
Merge pull request #5 from axelwalter/main

Update ports

github.com/OpenMS/streamlit-deployment - e07af257e387e3fb538b052ea74498ba78fbbc7b authored about 1 year ago by Timo Sachsenberg <[email protected]>
update submodules

github.com/OpenMS/streamlit-deployment - 31da9b1dc3dc441a8d5b63584fd3a2be194d5ead authored about 1 year ago by axelwalter <[email protected]>
update comments in docker compose file

github.com/OpenMS/streamlit-deployment - 7d0c6b8b5694fc17ffb904e0906bdf0c3925670f authored about 1 year ago by axelwalter <[email protected]>
Merge pull request #33 from Arslan-Siraj/main

remove globally remove and restore pages

github.com/OpenMS/streamlit-template - 922e88f18491579ba518defe5efeb952761d7fdb authored about 1 year ago by axelwalter <[email protected]>
remove globally remove and restore pages

github.com/OpenMS/streamlit-template - 73dd0ade90bf26a5af9a785e34cd40fa0c1a3704 authored about 1 year ago by Arslan <[email protected]>
fix typo in readme

github.com/OpenMS/streamlit-deployment - c9dc68a2413e81732b81ca9f7b8ce672a9f74f86 authored about 1 year ago by axelwalter <[email protected]>
update ports

github.com/OpenMS/streamlit-deployment - cfe2d93a4257fa46442c1323d120595fb245b98e authored about 1 year ago by axelwalter <[email protected]>
Merge branch 'develop' into Feature/GenericFileLoad

github.com/OpenMS/OpenMS - 99a24661c0c155a72dd93b8e5c80378af80ba63e authored about 1 year ago by Samuel Wein <[email protected]>
fix return types of loadExperiment and loadFeatures for FileHandler

github.com/OpenMS/OpenMS - 5278de3e0efd9cf2a9fc7f4606a29e7c8c01b0ff authored about 1 year ago by Samuel Wein <[email protected]>
[HOTFIX][PIN files] wrong mz loading (#7114)

fixes #7111

github.com/OpenMS/OpenMS - 342f6524e76a2bab3dcb428ba2f4aa2d6bfe8483 authored about 1 year ago by Julianus Pfeuffer <[email protected]>
Merge pull request #7113 from cbielow/fix_mzData

[FIX] make mzData more robust against wrong 'length' attributes for binary data

github.com/OpenMS/OpenMS - e40731cc64f4b38e80207371906b3334cc1aedf6 authored about 1 year ago by Chris Bielow <[email protected]>
Update CHANGELOG

github.com/OpenMS/OpenMS - 0be190018d11d5d489c9c72df2c7ecf30723eb93 authored about 1 year ago by Chris Bielow <[email protected]>
Merge pull request #7109 from poshul/restore_tutorials

readded HTML tutorial parts

github.com/OpenMS/OpenMS - 67d68ba01749f9c5bea1ffa09554bb07dca8b559 authored about 1 year ago by Chris Bielow <[email protected]>
readded TOPPAS tutorial

github.com/OpenMS/OpenMS - 65b53b1e9c1d8776d30481859cd85eabb2ab3810 authored about 1 year ago by Chris Bielow <[email protected]>
streamline fileProperties

github.com/OpenMS/OpenMS - dce163c3c89df98344e22b039cf66719862dcf47 authored about 1 year ago by Samuel Wein <[email protected]>
cleaned up comments

github.com/OpenMS/OpenMS - 018226138abe3830981019de774f4dc612b7395d authored about 1 year ago by Samuel Wein <[email protected]>
Added StoreSpectrum to match LoadSpectrum, filled in typenamebindings for all file types that we have

github.com/OpenMS/OpenMS - 9bb40a3af02182111ed828b60f5f25b0aecc83f7 authored about 1 year ago by Samuel Wein <[email protected]>
make mzData more robust against wrong 'length' attributes for binary data

github.com/OpenMS/OpenMS - dbfe4c15c9bc1331d95fe911c79566afaeca6734 authored about 1 year ago by Chris Bielow <[email protected]>
improve fileType testing, reformt Exception

github.com/OpenMS/OpenMS - c66eabb54cf5514b7c37ba9857568f9feb602dd6 authored about 1 year ago by Samuel Wein <[email protected]>
Merge branch 'develop' into Feature/GenericFileLoad

github.com/OpenMS/OpenMS - 9d881caf2e6d1c8106a8002b1fc4ac97940e7604 authored about 1 year ago by Samuel Wein <[email protected]>
fixed a couple of suggestions

github.com/OpenMS/OpenMS - a2d8bb68ef31d5b28ee8a46066d33633f42be1dc authored about 1 year ago by Samuel Wein <[email protected]>
update changelog helper to ignore TOPP/UTIL distinction (#7110)

Add FLASHDeconvWizard to the list of GUI apps to ignore

Set the LD_LIBRARY_PATH automatically...

github.com/OpenMS/OpenMS - b18b52e0b8219830bef780b5c67a1035b70aeb91 authored about 1 year ago by Michael R. Crusoe <[email protected]>
Merge pull request #4 from axelwalter/main

Update submodules with new cron job feature

github.com/OpenMS/streamlit-deployment - e2609fa329786cefcc90258ecb7016b7fbf0762e authored about 1 year ago by Timo Sachsenberg <[email protected]>
update submodules

github.com/OpenMS/streamlit-deployment - e17365a9bb5b1e574f8be10c58f54cab2a236524 authored about 1 year ago by axelwalter <[email protected]>
Merge pull request #32 from axelwalter/main

Add cron job to clean-up workspaces

github.com/OpenMS/streamlit-template - 8ff57a818e38d232239b337b518b8197642ec506 authored about 1 year ago by axelwalter <[email protected]>
Merge branch 'main' into main

github.com/OpenMS/streamlit-template - 1e700b2d2948cc3eaa03c48e0587f10fc216aa1e authored about 1 year ago by axelwalter <[email protected]>
fix workspace path in clean-up script

github.com/OpenMS/streamlit-template - 81c8eba36fdf12e44b800f2c5305372bed5cf0c4 authored about 1 year ago by axelwalter <[email protected]>
a couple of fixes

github.com/OpenMS/OpenMS - f5e4630626c6685fc7cd07b29cafd8413d3685e5 authored about 1 year ago by Samuel Wein <[email protected]>
clean up from code suggestions

github.com/OpenMS/OpenMS - 5137fd107697e46dcbc2cd46793edda13956221c authored about 1 year ago by Samuel Wein <[email protected]>
Apply suggestions from code review

Co-authored-by: Chris Bielow <[email protected]>

github.com/OpenMS/OpenMS - bbe2ae52ef74144961d71c190f2a12cd9e2728b5 authored about 1 year ago by Samuel Wein <[email protected]>
run cron job once per day

github.com/OpenMS/streamlit-template - 5543c2684ac2a1eafe51a4c1161fef1632aac0e1 authored about 1 year ago by axelwalter <[email protected]>
add cronjob to clean-up workspaces

github.com/OpenMS/streamlit-template - f462b6b0ac8c8199bb2a0833f295749bbfd94bea authored about 1 year ago by axelwalter <[email protected]>
Merge branch 'develop' into Feature/GenericFileLoad

github.com/OpenMS/OpenMS - 0e6b275a82814f976f22b75b13ba1214ffbd6aa8 authored about 1 year ago by Samuel Wein <[email protected]>
Merge remote-tracking branch 'upstream/develop' into Feature/GenericFileLoad

github.com/OpenMS/OpenMS - c374077f3f098fa2d2a1e9b5d555e8453497bb59 authored about 1 year ago by Samuel Wein <[email protected]>
Merge branch 'develop' into restore_tutorials

github.com/OpenMS/OpenMS - 02397a37ac18163e0f8bf79dd99e8678d13f072d authored about 1 year ago by Samuel Wein <[email protected]>
Deisotope Fragment Tolerance Exception (#7101)

* added deisotoper tolerance exception

* moved tolerance exception before isopeaks (argument ...

github.com/OpenMS/OpenMS - 19f33d5bedf25cde427e35d931806c8a5e03d749 authored about 1 year ago by Matteo Pilz <[email protected]>
add option to extract decoy features in FFID, filter by feature score in ProteomicsLFQ (#7103)

* add option to extract decoy features

* minor refactoring

* add SVM feature scoring

* ...

github.com/OpenMS/OpenMS - c2cf86b32c05dce46dbac9ae85c647f883f62359 authored about 1 year ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into restore_tutorials

github.com/OpenMS/OpenMS - e22bc79bdf688823604ee027f6bc15d30b59224a authored about 1 year ago by Samuel Wein <[email protected]>
renamed OpenMS_tutorial to developer_tutorial

github.com/OpenMS/OpenMS - 6b3cc475b03818281f4e3a5db51f32027c396a42 authored about 1 year ago by Samuel Wein <[email protected]>
SPDXify licenses, change alignment of tutorial on Doxygen

github.com/OpenMS/OpenMS - 9a5986a438f17659f2d26ad37236424c77a570a3 authored about 1 year ago by Samuel Wein <[email protected]>
Merge pull request #7108 from OpenMS/simde_0.7.7_20231002

Update SIMDe to 2023-10-02 snapshot of 0.7.7

github.com/OpenMS/OpenMS - f9307502f2b0b0cc66a5617d1d95a5f35d072d17 authored about 1 year ago by Michael R. Crusoe <[email protected]>
readded HTML tutorial parts

github.com/OpenMS/OpenMS - 2d01bd9ac633351914c0761e7aabda36f60faf57 authored about 1 year ago by Samuel Wein <[email protected]>
Merge pull request #28 from Arslan-Siraj/streamlit_help

add subprocess example and some helper functions

github.com/OpenMS/streamlit-template - c653febcfa92ff9db7aca34dc735c68a6bcc10db authored about 1 year ago by axelwalter <[email protected]>
Update SIMDE to 2023-10-02 snapshot of 0.7.7

https://github.com/simd-everywhere/simde-no-tests/commit/64f94c681949ece73d1cda7f99b283cf2ee7489...

github.com/OpenMS/OpenMS - 2c13492e50874c16687cf7c2c22fea305991e324 authored about 1 year ago by Michael R. Crusoe <[email protected]>
run subprocess as seperate page

github.com/OpenMS/streamlit-template - b0dcb585786bfb324fdbd3db46d001d15ddf3713 authored about 1 year ago by Arslan <[email protected]>
add pages as order in pages folder

github.com/OpenMS/streamlit-template - 38f94a5c129e8dba6d392ac02440eecfb07e54c2 authored about 1 year ago by Arslan <[email protected]>
resolve conflict

github.com/OpenMS/streamlit-template - f684ef3261a2ef4174bf660ea00e37da1fe884e4 authored about 1 year ago by Arslan <[email protected]>
Merge pull request #7105 from OpenMS/jpfeuffer-patch-5

[FIX][SageAdapter] Use `restrict: null`

github.com/OpenMS/OpenMS - df07ac2220ede565d0ac79bc5c4b857344a822fd authored about 1 year ago by Julianus Pfeuffer <[email protected]>
[FIX][SageAdapter] Use `restrict: null`

github.com/OpenMS/OpenMS - 70f33c3fd47b034fa95824a1311d890c738a21cb authored about 1 year ago by Julianus Pfeuffer <[email protected]>
Merge pull request #3 from axelwalter/main

Use docker volumes for workspace data

github.com/OpenMS/streamlit-deployment - 1d52ebdebb473e50efe6a7649a467f3d7e5a538b authored about 1 year ago by Timo Sachsenberg <[email protected]>
update README

github.com/OpenMS/streamlit-deployment - 6c1da50d8c8d1bb516aa1147d61d0482e19371cc authored about 1 year ago by axelwalter <[email protected]>
pass Github token to download windows executables

github.com/OpenMS/streamlit-deployment - 15ddfe21acff7d0fab9ebb2c5cd8b6efbf7af4a0 authored about 1 year ago by axelwalter <[email protected]>
workspaces location

github.com/OpenMS/streamlit-deployment - 680cc8e16b162c3c9cd8ed9f5f32caa6f28a24aa authored about 1 year ago by axelwalter <[email protected]>
update README

github.com/OpenMS/streamlit-deployment - b82a7d0cec7dafb103d79bbee4396dfd10b33496 authored about 1 year ago by axelwalter <[email protected]>
update submodule streamlit-template

github.com/OpenMS/streamlit-deployment - eb2d07d53e9b27a7ea06f1b1df16a7de840be708 authored about 1 year ago by axelwalter <[email protected]>
update submodule umetaflow-gui

github.com/OpenMS/streamlit-deployment - c6d6f1feeac52fc7fa47ceb8e49282212eb95ef8 authored about 1 year ago by axelwalter <[email protected]>
Merge branch 'OpenMS:main' into main

github.com/OpenMS/streamlit-deployment - 15a9733fad952f91b480a93f0bb8c11122003c26 authored about 1 year ago by axelwalter <[email protected]>
Merge pull request #31 from axelwalter/main

Remove mzML files from parameter items after deletion

github.com/OpenMS/streamlit-template - c461bdd20574c3cca73a3230be120e1842f2a893 authored about 1 year ago by axelwalter <[email protected]>
Merge branch 'OpenMS:main' into main

github.com/OpenMS/streamlit-template - 99139f2aa121506b0c18b736d8600a9ea9fea58b authored about 1 year ago by axelwalter <[email protected]>
remove mzML files from parameter items after deletion

github.com/OpenMS/streamlit-template - 564fcd12383889c7b879b4b9d8c9583d033157a0 authored about 1 year ago by axelwalter <[email protected]>
Merge pull request #30 from axelwalter/main

Complex workflow with mzML files

github.com/OpenMS/streamlit-template - bb692710cef9cc153a5844e89a58bad6e749266b authored about 1 year ago by axelwalter <[email protected]>
add new pages to captcha control

github.com/OpenMS/streamlit-template - 0c739dedd1986cf1aee4fca2be25bfa024cd1166 authored about 1 year ago by axelwalter <[email protected]>
define mzML directory in remove functions

github.com/OpenMS/streamlit-template - 4449ccaf237eee0fea922f1ed6e1e8d00a1efaf5 authored about 1 year ago by axelwalter <[email protected]>
complex workflow with mzML files

github.com/OpenMS/streamlit-template - 720cc4b33a4d5750b77bacf7b5b97d90bb8d7c7e authored about 1 year ago by axelwalter <[email protected]>
SageAdapter option to keep json as debug output (#7102)

github.com/OpenMS/OpenMS - 2eaf4de970ab33b970051356359ddb34bc62b46e authored about 1 year ago by Timo Sachsenberg <[email protected]>
use docker volumes for workspaces

github.com/OpenMS/streamlit-deployment - 23f707a280ef0b4cd8d6116ce086cb10e057cead authored about 1 year ago by axelwalter <[email protected]>
Merge pull request #2 from axelwalter/main

Add emtpy workspace directories

github.com/OpenMS/streamlit-deployment - 10457e4f05f05ef123278383ec810731a7ac06e3 authored about 1 year ago by Timo Sachsenberg <[email protected]>
add emtpy workspace directories

github.com/OpenMS/streamlit-deployment - 3e73a241af2c3fc9689562ce3cc69d568bce9db9 authored about 1 year ago by axelwalter <[email protected]>
Update SageAdapter.cpp (#7100)

github.com/OpenMS/OpenMS - de6682436952fbfa9c3fae613bbf23e91dabfa45 authored about 1 year ago by Timo Sachsenberg <[email protected]>