Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

OpenMS

Make mass spectrometry analysis accessible to anyone
Collective - Host: opensource - https://opencollective.com/openms - Website: https://openms.org - Code: https://github.com/openms

Merge branch 'develop' into GHA-full-fixes

github.com/OpenMS/OpenMS - 04e7cfdb1ae05aa793ffd1cb7fae14715a464f53 authored 11 months ago by Samuel Wein <[email protected]>
Disable building docs on windows and Mac (temporarily)

github.com/OpenMS/OpenMS - 728679254c63d313aa1c1fe4a99b39dc8f509a78 authored 11 months ago by Samuel Wein <[email protected]>
Bump umetaflow-gui from `9e84685` to `6cc740f`

Bumps [umetaflow-gui](https://github.com/axelwalter/umetaflow-gui) from `9e84685` to `6cc740f`.
...

github.com/OpenMS/streamlit-deployment - 319a1ae9ef83165077947c40b5362f44127bd55a authored 11 months ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Merge pull request #10 from OpenMS/dependabot/submodules/openms-streamlit-template-3ffba89

Bump openms-streamlit-template from `f8b3cfa` to `3ffba89`

github.com/OpenMS/streamlit-deployment - aa784c3ca72cca3336105ac4e115d69d77fd85d9 authored 11 months ago by axelwalter <[email protected]>
Merge pull request #7207 from OpenMS/upstream/develop

Upstream/develop

github.com/OpenMS/OpenMS - 95fad425be87ce36d4387038fd9f936ccf784cef authored 11 months ago by Samuel Wein <[email protected]>
Merge branch 'develop' into upstream/develop

github.com/OpenMS/OpenMS - 53ed385cde0dac837a677063d45efc733e49a964 authored 11 months ago by Samuel Wein <[email protected]>
[fix] add licenses for tool_description_lib

github.com/OpenMS/OpenMS - 3310fc361bb5015f70f4850e92d6d6fa3a246863 authored 11 months ago by Samuel Wein <[email protected]>
handle coinor from brew as well

github.com/OpenMS/OpenMS - 9866e1bae2b35fced7618fcd45218571098e6268 authored 11 months ago by julianuspfeuffer <[email protected]>
Bump nuxl-app from `9038a47` to `c85f1b9`

Bumps [nuxl-app](https://github.com/Arslan-Siraj/nuxl-app) from `9038a47` to `c85f1b9`.
- [Commi...

github.com/OpenMS/streamlit-deployment - 421490de2805ef65ecaf718d931910ca22c084f4 authored 11 months ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bump openms-streamlit-template from `f8b3cfa` to `3ffba89`

Bumps [openms-streamlit-template](https://github.com/OpenMS/streamlit-template) from `f8b3cfa` t...

github.com/OpenMS/streamlit-deployment - c3414e7d5218ec437adaae51149739c0efd50cb0 authored 11 months ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Merge pull request #9 from axelwalter/main

Add dependabot to check for changes in submodules

github.com/OpenMS/streamlit-deployment - 7aa1bcdc8bb0f09192a4c05c61e3556354b7c57f authored 11 months ago by axelwalter <[email protected]>
Remove the rest of ERPairFinder (#7197)

github.com/OpenMS/OpenMS - 7a8bea61b57190a966c74683976bc8d6f29d2909 authored 11 months ago by Samuel Wein <[email protected]>
Merge branch 'develop' into ERPairDocFix

github.com/OpenMS/OpenMS - 2ec16f61675de2f6f19fc89ff20c7fd90117c6f2 authored 11 months ago by Samuel Wein <[email protected]>
Remove the rest of ERPairFinder

github.com/OpenMS/OpenMS - 8205ea78dfd2d331a8ab7839ccda99dddbdc323d authored 11 months ago by Samuel Wein <[email protected]>
Update charge_isotope_deconvolution.rst

Fix unescaped %

github.com/OpenMS/pyopenms-docs - a852d88040b6ccadef9b5fbd698a0d3234cb9a4f authored 11 months ago by Samuel Wein <[email protected]>
Update chemistry.rst

fix typo

github.com/OpenMS/pyopenms-docs - ea2d0a9558be318f91c363cbe674984f7033eae2 authored 11 months ago by Samuel Wein <[email protected]>
Update quantitative_data.rst

Remove reference to outdated page

github.com/OpenMS/pyopenms-docs - 16607afc4ee38415cd98203b09cceb3baab4b94c authored 11 months ago by Samuel Wein <[email protected]>
Merge pull request #122 from JeeH-K/fix_redirect_FD

fix link to FLASHDeconv

github.com/OpenMS/OpenMS-website - c3740c4532acfef798e9c0b3e4611d5f7f75b29e authored 11 months ago by Julianus Pfeuffer <[email protected]>
Merge pull request #7186 from OpenMS/refactor_remove_wavelet

[CLEANUP] remove unused and outdated wavelet code

github.com/OpenMS/OpenMS - 0f8167889949b27dc72608e475ece19d6c8b47b2 authored 11 months ago by Samuel Wein <[email protected]>
test doxygen

github.com/OpenMS/OpenMS - f537498f9cd4d03ca93f3de632d955d6b091d5c5 authored 11 months ago by Julianus Pfeuffer <[email protected]>
fix link to FLASHDeconv

github.com/OpenMS/OpenMS-website - 8658d375ab6e531b5d318eb7641bb421fa766464 authored 11 months ago by JeeH-K <[email protected]>
Patch/use tdl new take (#6156)

* feature: add CWL export

- Extends the ParamCWLFile class to export CWL description files

...

github.com/OpenMS/OpenMS - 0cb6985052e29db5a5f0f6d77410538a6b4335ba authored 11 months ago by Simon Gene Gottlieb <[email protected]>
Update openms_ci_matrix_full.yml

revert tutorial change

github.com/OpenMS/OpenMS - 9feee9ed147e8a657e53323ecd435ef2ee313096 authored 11 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

Enable tutorial building update path to download docs artifiact

github.com/OpenMS/OpenMS - c16a424dda51f9dccf8f278fa8042e697698d744 authored 11 months ago by Samuel Wein <[email protected]>
Merge pull request #419 from axelwalter/adduct-detection-tutorial

Adduct detection tutorial

github.com/OpenMS/pyopenms-docs - 1d810aeeac69f36d3faac2a07ecdd6418debb5d7 authored 11 months ago by axelwalter <[email protected]>
Update dependabot.yml

github.com/OpenMS/streamlit-deployment - 14ce52e3c50bf69c9a643b8ce607eee17f5bd394 authored 11 months ago by axelwalter <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - 757fa38914fe69e1a151610bc9f43fae124e4695 authored 11 months ago by Samuel Wein <[email protected]>
add adduct detection tutorial

github.com/OpenMS/pyopenms-docs - 6e9bba53feec73eb07227416b0f68795819c0b1f authored 11 months ago by axelwalter <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - a46fd83b7521e6eb4752123e7062c2d139c4d7db authored 11 months ago by Samuel Wein <[email protected]>
Update .github/workflows/openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - c09b16cf1a9c76a46cf006fbbc6e87742f6aef15 authored 11 months ago by Julianus Pfeuffer <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - 8e893e06d5e15acb8a1c81d80278238a9df4e216 authored 11 months ago by Samuel Wein <[email protected]>
Update .github/workflows/openms_ci_matrix_full.yml

Co-authored-by: Julianus Pfeuffer <[email protected]>

github.com/OpenMS/OpenMS - e4d3d91dc9a41de754ee21579d49ceacb5a4c0ca authored 11 months ago by Samuel Wein <[email protected]>
Merge branch 'develop' into GHA-full-fixes

github.com/OpenMS/OpenMS - 905551da42659da02c6e8274ab6db83b638fb745 authored 11 months ago by Samuel Wein <[email protected]>
Merge pull request #7194 from OpenMS/NSIS-fix-fix

Overwrite 1k NSIS without prompt

github.com/OpenMS/OpenMS - cdd723be7fe6bf6dae42ac43569d55ca5adcce04 authored 11 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

Fixes from suggestions

github.com/OpenMS/OpenMS - b103f45c60cdb04231a785110fab4250f52ce74a authored 11 months ago by Samuel Wein <[email protected]>
Overwrite 1k NSIS without prompt

Fix bug where Windows CI failed after 7z refused to overwrite NSIS files.

github.com/OpenMS/OpenMS - 3327a883f7070a2e3bbff291674f464bc344d182 authored 11 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

try to upload documentation

github.com/OpenMS/OpenMS - dd1c5eab81e4373053ccdda4e1b41d256c6d6405 authored 11 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - b716cd64dd571619c4c1c91aac24dd6561a25180 authored 11 months ago by Samuel Wein <[email protected]>
Feature/includes (#7191)

* [FIX] Qt include fixes

* [FIX] include fixes

github.com/OpenMS/OpenMS - 9a9cd68bee74358fa57d836315c43c383d9a347c authored 11 months ago by Hannes Roest <[email protected]>
Win installer: check for correct NSIS version (#7192)

* [GHA] use custom NSIS for Windows installer

* check for correct NSIS version before packaging

github.com/OpenMS/OpenMS - 1b5e049caf3b2427cb4c665ff2d588204fcc99ea authored 11 months ago by Chris Bielow <[email protected]>
[GHA] use custom NSIS for Windows installer (#7190)

github.com/OpenMS/OpenMS - f7f43aa2d3a74a68ed37f4cd173f8b88e67482e3 authored 11 months ago by Chris Bielow <[email protected]>
Merge pull request #7189 from cbielow/fix_win_installer

Fix win installer

github.com/OpenMS/OpenMS - fd9af40e9a2428924d98c5576891f6c807279686 authored 11 months ago by Chris Bielow <[email protected]>
remove installation of .NET and VS runtimes as dependency of proteowizard (msconvert): the current pwiz ships all vc-runtimes in its ./bin folder and requires a .NET runtime which is by default installed on every Win10 anyway (see https://learn.microsoft.com/en-us/archive/blogs/astebner/mailbag-what-version-of-the-net-framework-is-included-in-what-version-of-the-os)

github.com/OpenMS/OpenMS - 302b69fc7d3c0bf802640c78ac435531baff6432 authored 11 months ago by Chris Bielow <[email protected]>
add dependabot to update submodules

github.com/OpenMS/streamlit-deployment - 12b9c5e94077fd4fd4fce113e1e388900cb76d77 authored 11 months ago by axelwalter <[email protected]>
switch to shipping vc redist files inside our ./bin directory (avoid use of shipping and calling vc-redist.exe on the target machine)

github.com/OpenMS/OpenMS - 541a759ffa81f725ab141f263beafeeb16c85cbf authored 11 months ago by Chris Bielow <[email protected]>
[DOC] include FLASHDeconv wizard in the list of GUI tools

github.com/OpenMS/OpenMS - 867c7e957d920933da2ec3e00c10e734e3af4bf4 authored 11 months ago by Chris Bielow <[email protected]>
check for Qt5.15 to make sure Qt finds its plugins when we run GUI tools after installation on the target machine

github.com/OpenMS/OpenMS - f4823ac7a20c694617e44724cdf25ac3ff228385 authored 11 months ago by Chris Bielow <[email protected]>
Update CHANGELOG

github.com/OpenMS/OpenMS - 4dd4e7b174a993d4259710cc4670c70a78a7e1d8 authored 12 months ago by Timo Sachsenberg <[email protected]>
reinserted openms banner

github.com/OpenMS/OpenMS-website - 38415b653f0f380d300af5c3f77ed7534a25472d authored 12 months ago by matteopilz <[email protected]>
fixed quick facts

github.com/OpenMS/OpenMS-website - 63f7e86c64daf3456aeebcd90eb95011549a6b88 authored 12 months ago by matteopilz <[email protected]>
Merge remote-tracking branch 'origin/refactor_remove_wavelet' into refactor_remove_wavelet

github.com/OpenMS/OpenMS - e8795149ce8f475417f86731d3cef24e90971b3d authored 12 months ago by timosachsenberg <[email protected]>
update changelog

github.com/OpenMS/OpenMS - da2243c5cddd8c9af18d5f574d3aed67d781b063 authored 12 months ago by timosachsenberg <[email protected]>
Update tutorial.md (#216)

* Update tutorial.md

* Update tutorial.md

* Update tutorial.md

Remove refs to OMSSA sin...

github.com/OpenMS/OpenMS-docs - adb4f212efbdd1884a0e72313fd1a507f6073871 authored 12 months ago by Samuel Wein <[email protected]>
Merge branch 'develop' into refactor_remove_wavelet

github.com/OpenMS/OpenMS - cb265c5033211a6c44889834ee360742754c0f7b authored 12 months ago by Timo Sachsenberg <[email protected]>
rename peakpcikermrm to peakpickerchromatogram (#7185)

github.com/OpenMS/OpenMS - d2ba17623bca3bae6344cb53a55fb6ee2168e399 authored 12 months ago by Timo Sachsenberg <[email protected]>
forgot

github.com/OpenMS/OpenMS - e8f4ef5e56205ba0436a4bbd0f9e7a41ad70cac4 authored 12 months ago by timosachsenberg <[email protected]>
removed some remaining terms in docs

github.com/OpenMS/OpenMS - 1ce58a94b87a2a0b0ef69a435d7df22a6b93d155 authored 12 months ago by timosachsenberg <[email protected]>
remove unused and outdated wavelet code

github.com/OpenMS/OpenMS - 9c99b829aa38279b5bb36e8a4bdc4717433501bb authored 12 months ago by timosachsenberg <[email protected]>
[FIX] comment parsing once and for all (#179)

* [test] add more comment parsing tests

* more tests

* whitespace

* test fixes

* err...

github.com/OpenMS/autowrap - 570a6f4788e6520d022959a4f40e3299ee1e7c12 authored 12 months ago by Julianus Pfeuffer <[email protected]>
Update Knime versions and plugins

Update to KNIME 5

github.com/OpenMS/OpenMS-docs - 671efdeef6f894b7b0ec86dabf7af77fe83dc23c authored 12 months ago by Samuel Wein <[email protected]>
Increase Lychee timeout (#214)

Increase Lychee timeout

github.com/OpenMS/OpenMS-docs - c7cc5a1596c83a71bbacf8a92dffc11693427f06 authored 12 months ago by Samuel Wein <[email protected]>
Update downloads.md (#188)

* Update downloads.md

* cleaned up

* removed releases section

* fix broken link

* fi...

github.com/OpenMS/OpenMS-docs - 2b851d896846ff02238765ff96c49b142a330472 authored 12 months ago by Samuel Wein <[email protected]>
fix some compile warnings and add sage citation (#7184)

github.com/OpenMS/OpenMS - 1294a3ffec2be605801284959f7b77f50db100da authored 12 months ago by Timo Sachsenberg <[email protected]>
Update CHANGELOG

github.com/OpenMS/OpenMS - d944c3af40959e7201fc0c4e8aaa1e5e5c45fd69 authored 12 months ago by Chris Bielow <[email protected]>
Merge pull request #7183 from cbielow/fix_mzidentml

[DOC] Annotate SpectraMower tools

github.com/OpenMS/OpenMS - e660473da8462725f798e0ab3cd13e218ce3c18c authored 12 months ago by Chris Bielow <[email protected]>
clean up SpectraFilter tools

-- remove MarkerMower, since it does absolutely NOTHING
-- add docs for all the others

github.com/OpenMS/OpenMS - d208b1d87738e29fa2f2903cdfd873cb26a38c71 authored 12 months ago by Chris Bielow <[email protected]>
Merge pull request #7180 from JeeH-K/fixing_wizard

[FIX] ParamEditor: Move getting-tags-part to avoid error from a node (subsection param)

github.com/OpenMS/OpenMS - e3ecff60d0e13b74f659b94bc8305e915d1f157a authored 12 months ago by Chris Bielow <[email protected]>
added a Changelog of fixing the bug on ParamEditor (#7180)

github.com/OpenMS/OpenMS - 5b86cc122582ca4be1bd2ceebc89cbbada03e92b authored 12 months ago by JeeH-K <[email protected]>
move getting-tags-part to avoid error from a node (subsection param)

github.com/OpenMS/OpenMS - 0fe11339af1ec6472877a241e0ec32c3af803004 authored 12 months ago by JeeH-K <[email protected]>
Bump src/pyOpenMS/pyopenms-docs from `4bc75aa` to `64016e7` (#7179)

Bumps [src/pyOpenMS/pyopenms-docs](https://github.com/OpenMS/pyopenms-docs) from `4bc75aa` to `6...

github.com/OpenMS/OpenMS - f097269669ba508ef28d72ae283606ff15c0491a authored 12 months ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
changed packages_dir to packages-dir (#7175)

github.com/OpenMS/OpenMS - dacb404aaf46bf6c9c4dee37938fe6546d0f30c2 authored 12 months ago by Matteo Pilz <[email protected]>
use trapezoid integration (#7177)

Co-authored-by: timosachsenberg <[email protected]>

github.com/OpenMS/OpenMS - 02f4818467f39d019a7d601600d46291831f1f29 authored 12 months ago by Timo Sachsenberg <[email protected]>
[FIX] make FileConverter more robust (#7176)

* [FIX] make FileConverter more robust against misuse (i.e. incompatible in/out) to avoid produc...

github.com/OpenMS/OpenMS - a2a75fb2b95d113a8de1457206cb8e9dbfd2f1c2 authored 12 months ago by Chris Bielow <[email protected]>
augment CHANGELOG

github.com/OpenMS/OpenMS - 1e52378b9eb98304f1a21af3b88c91c252002d1d authored 12 months ago by Chris Bielow <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into fix_mzidentml

github.com/OpenMS/OpenMS - 19c724331ea4d76a87161dc83221f15647e52ef6 authored 12 months ago by Chris Bielow <[email protected]>
[FIX] make FileConverter more robust against misuse (i.e. incompatible in/out) to avoid producing empty output containers (metadata makes it non-empty) or even no output file.

github.com/OpenMS/OpenMS - 752a440bb103272220c0e53fb1299dc5dca81cff authored 12 months ago by Chris Bielow <[email protected]>
choose binder instance able to run our notebooks

github.com/OpenMS/pyopenms-docs - 64016e743486c6986d52efc1b2140a49df6ec420 authored 12 months ago by Timo Sachsenberg <[email protected]>
Bump src/pyOpenMS/pyopenms-docs from `b44adfe` to `4bc75aa` (#7173)

Bumps [src/pyOpenMS/pyopenms-docs](https://github.com/OpenMS/pyopenms-docs) from `b44adfe` to `4...

github.com/OpenMS/OpenMS - eed11154aa30d4c7bcb9dc4b873d2da699b4c0bc authored 12 months ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
update test file (#7170)

github.com/OpenMS/OpenMS - e0d185ff7855ce47c40ec45156b6f833e40358aa authored 12 months ago by Timo Sachsenberg <[email protected]>
Update build-push-notebooks.yaml

Doing this daily means that mybinder needs to rebuild the image every day. Commenting this out f...

github.com/OpenMS/pyopenms-docs - 4bc75aa6485de06868035c460783db35efa497c3 authored 12 months ago by Samuel Wein <[email protected]>
Update requirements.txt

Use release pyOpenMS package

github.com/OpenMS/pyopenms-docs - c004193c9b7286eb51432bd717eb856885032247 authored 12 months ago by Samuel Wein <[email protected]>
Merge pull request #7172 from cbielow/fix_clang

fix compile error in MzQCFile.cpp for clang11(linux)

github.com/OpenMS/OpenMS - 24e0cd14628def9e2d4978d14428e77ea2931670 authored 12 months ago by Chris Bielow <[email protected]>
fix compile error in MzQCFile.cpp for clang11(linux)

github.com/OpenMS/OpenMS - 2998adf0ae12062b61f364ce1e8b6974e8b432fd authored 12 months ago by Chris Bielow <[email protected]>
Only load MS1 in EICExtractor (#7169)

github.com/OpenMS/OpenMS - 95f98eeb169081c09b06630d02782cbf732282fb authored 12 months ago by Timo Sachsenberg <[email protected]>
Bump THIRDPARTY from `e492568` to `947b56a` (#7167)

Bumps [THIRDPARTY](https://github.com/OpenMS/THIRDPARTY) from `e492568` to `947b56a`.
- [Releas...

github.com/OpenMS/OpenMS - bdef32704d6111e96bdd9f2976efd0a807957ea2 authored 12 months ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bump contrib from `3d8710c` to `69e61f2` (#7166)

Bumps [contrib](https://github.com/OpenMS/contrib) from `3d8710c` to `69e61f2`.
- [Commits](htt...

github.com/OpenMS/OpenMS - 0b5888f23af3aa2c339a584d5b45964b78c4fc33 authored 12 months ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Merge pull request #39 from axelwalter/main

Add CI

github.com/OpenMS/streamlit-template - 3ffba89e5048b25fae5efa649caee85ea3750abe authored 12 months ago by axelwalter <[email protected]>
Merge pull request #7163 from cbielow/fix_clang

Fix some bugs and warnings

github.com/OpenMS/OpenMS - 15bc66986055b812545a07c448db61fcd73691de authored 12 months ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into fix_clang

github.com/OpenMS/OpenMS - 17fd9e49c7e6082601c739d438fc1ec1fa73c309 authored 12 months ago by Chris Bielow <[email protected]>
fix error in concatenation

github.com/OpenMS/OpenMS - 57282835baf9f6a7f456d8807527155c809d8190 authored 12 months ago by Chris Bielow <[email protected]>
Merge pull request #7153 from cbielow/fix_mzidentml

[FIX] mzIdentML improvements (cvParam parsing and more)

github.com/OpenMS/OpenMS - 254ea4f8ee832f4cad48f0143a51a2880c607050 authored 12 months ago by Chris Bielow <[email protected]>
Merge branch 'develop' into fix_mzidentml

github.com/OpenMS/OpenMS - fd4155a0a22706011297f94aa73803cf0dc7ebec authored 12 months ago by Chris Bielow <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into develop

github.com/OpenMS/OpenMS - 66aea004130e32900801f8374bb730d7b2361eaf authored 12 months ago by Chris Bielow <[email protected]>
fix clang warnings

github.com/OpenMS/OpenMS - ce2b1339749f9c0e128ce8424ddd6c752687c7fd authored 12 months ago by Chris Bielow <[email protected]>
and install pytest

github.com/OpenMS/streamlit-template - 6e65ed60c17dd8bef11f401b94b1359341b83a19 authored 12 months ago by axelwalter <[email protected]>
install all dependencies for unit tests

github.com/OpenMS/streamlit-template - a6436da2eab27b78bf2b4481653ad9768372445d authored 12 months ago by axelwalter <[email protected]>
pycache content to .gitignore

github.com/OpenMS/streamlit-template - 3424f43125008adaa92ae0a558bb8431fcfd9e2a authored 12 months ago by axelwalter <[email protected]>
Merge pull request #7161 from matteopilz/fix-ubuntu-wheels-test

Fix ubuntu wheels test

github.com/OpenMS/OpenMS - 996f4fb128bebd7bd554b83bc61581e5cfd92fc8 authored 12 months ago by Samuel Wein <[email protected]>
update sage to 0.14.4 (#105)

github.com/OpenMS/THIRDPARTY - 947b56a8ba16cb46105ab2b41ed0d8f5cf9a45f4 authored 12 months ago by Timo Sachsenberg <[email protected]>