Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

OpenMS

Make mass spectrometry analysis accessible to anyone
Collective - Host: opensource - https://opencollective.com/openms - Website: https://openms.org - Code: https://github.com/openms

some preps for upcoming GUI PR

github.com/OpenMS/OpenMS - f00d103293359325e18ff849043a5c15af592753 authored over 2 years ago by bielow <[email protected]>
some preps for upcoming GUI PR

github.com/OpenMS/OpenMS-1 - f00d103293359325e18ff849043a5c15af592753 authored over 2 years ago by bielow <[email protected]>
Use correct admonitions (#36)

* added one note to installation on gnu linux md file

* added one note to installation on gnu...

github.com/OpenMS/OpenMS-docs - 55f743c8454d50b9e277edebfaf2fc2f499bba52 authored over 2 years ago by greengypsy <[email protected]>
some small changes

github.com/OpenMS/OpenMS-1 - fa4a6e170f2a0eb477a88773d7a92f3ce6c788dd authored over 2 years ago by beschorneh32 <[email protected]>
some small changes

github.com/OpenMS/OpenMS - fa4a6e170f2a0eb477a88773d7a92f3ce6c788dd authored over 2 years ago by beschorneh32 <[email protected]>
Added keyboard syntax plus other minor changes (#35)

* added keyboard syntax plus other minor changes such as adding full stops to sentences

* add...

github.com/OpenMS/OpenMS-docs - cb4c0e5f5235e0bb373c55d373e344271d0e8339 authored over 2 years ago by greengypsy <[email protected]>
Merge branch 'maxquant-output' of https://github.com/vrossow/OpenMS into maxquant-output

github.com/OpenMS/OpenMS - a9b0a23255ea15e0f9e00978432a9c039ab48394 authored over 2 years ago by beschorneh32 <[email protected]>
Merge branch 'maxquant-output' of https://github.com/vrossow/OpenMS into maxquant-output

github.com/OpenMS/OpenMS-1 - a9b0a23255ea15e0f9e00978432a9c039ab48394 authored over 2 years ago by beschorneh32 <[email protected]>
MQEvidence completely uses MQExporterHelper

github.com/OpenMS/OpenMS-1 - 2918d8a06ac709f73b15e32fb59e4dede7e55020 authored over 2 years ago by beschorneh32 <[email protected]>
MQEvidence completely uses MQExporterHelper

github.com/OpenMS/OpenMS - 2918d8a06ac709f73b15e32fb59e4dede7e55020 authored over 2 years ago by beschorneh32 <[email protected]>
Publishing Site OpenMS/openms.de at 8afe9c46959084f8d5c6c4ef0c8761da93f64b3f on Wed May 25 07:51:42 UTC 2022

github.com/OpenMS/openms.github.io - 683a93a0e01d4e917cdec6edbc2b0597b5e6fe1a authored over 2 years ago by rahul799 <[email protected]>
improvement

github.com/OpenMS/OpenMS-website - 8afe9c46959084f8d5c6c4ef0c8761da93f64b3f authored over 2 years ago by rahul799 <[email protected]>
Fixes: review comments by @greengypsy (#34)

* Fixes: review comments by @greengypsy

* review fixes

and add a few links to tutorials

github.com/OpenMS/OpenMS-docs - f8db1833412d35464e3d9b129aff866112c6cc3c authored over 2 years ago by Tapasweni Pathak <[email protected]>
Fix (EnzymaticDigestion): exact match for SPEC_FULL and no_cleavage onlyh when allow_random_asp_pro_cleavage is false

github.com/OpenMS/OpenMS-1 - 4e929a2092b0ecaed1da149648ea49294a72686f authored over 2 years ago by zhuchcn <[email protected]>
Fix (EnzymaticDigestion): exact match for SPEC_FULL and no_cleavage onlyh when allow_random_asp_pro_cleavage is false

github.com/OpenMS/OpenMS - 4e929a2092b0ecaed1da149648ea49294a72686f authored over 2 years ago by zhuchcn <[email protected]>
added option to remove hulls

github.com/OpenMS/OpenMS - 8f6165f5f2f203acada107b32c5721a243d5202a authored over 2 years ago by Timo Sachsenberg <[email protected]>
added option to remove hulls

github.com/OpenMS/OpenMS-1 - 8f6165f5f2f203acada107b32c5721a243d5202a authored over 2 years ago by Timo Sachsenberg <[email protected]>
lots of fixes

github.com/OpenMS/OpenMS-1 - b6bec7806be31c07346a40b69636cb3a4164d87d authored over 2 years ago by bielow <[email protected]>
lots of fixes

github.com/OpenMS/OpenMS - b6bec7806be31c07346a40b69636cb3a4164d87d authored over 2 years ago by bielow <[email protected]>
lots of fixes...

github.com/OpenMS/OpenMS - d586cbf770b8a7d2d8f06cdf9e202aa8b86536e1 authored over 2 years ago by bielow <[email protected]>
lots of fixes...

github.com/OpenMS/OpenMS-1 - d586cbf770b8a7d2d8f06cdf9e202aa8b86536e1 authored over 2 years ago by bielow <[email protected]>
Changed format to backticks for code and bold for tools and UI elements (#33)

* made changes to several files

* formatted text with backticks and bold

* add internal li...

github.com/OpenMS/OpenMS-docs - 852e48a707a6b39a4390d1556ff6b31f6b458212 authored over 2 years ago by greengypsy <[email protected]>
Test function + a few documentation needed

github.com/OpenMS/OpenMS-1 - f9eb425b7125515e2a0ae5513513f67f63d507fa authored over 2 years ago by kyowonjeong <[email protected]>
Test function + a few documentation needed

github.com/OpenMS/OpenMS - f9eb425b7125515e2a0ae5513513f67f63d507fa authored over 2 years ago by kyowonjeong <[email protected]>
Msms should work now.

github.com/OpenMS/OpenMS - 287f947cb574349ec93703e31cd48e5fd2dee674 authored over 2 years ago by Virginia Rossow <[email protected]>
Msms should work now.

github.com/OpenMS/OpenMS-1 - 287f947cb574349ec93703e31cd48e5fd2dee674 authored over 2 years ago by Virginia Rossow <[email protected]>
Merge branch 'maxquant-output' of https://github.com/vrossow/OpenMS into maxquant-output

github.com/OpenMS/OpenMS-1 - dd6d4b6a8e1f5462ed40f9b92e4271df4c17fffc authored over 2 years ago by Virginia Rossow <[email protected]>
Merge branch 'maxquant-output' of https://github.com/vrossow/OpenMS into maxquant-output

github.com/OpenMS/OpenMS - dd6d4b6a8e1f5462ed40f9b92e4271df4c17fffc authored over 2 years ago by Virginia Rossow <[email protected]>
fixed the TOPP_QualityContorl_1 test, by adding the new input fasta_file

github.com/OpenMS/OpenMS - c03dade94f7a5d725b8faa5dfba2128754cd6827 authored over 2 years ago by lennykovac <[email protected]>
fixed the TOPP_QualityContorl_1 test, by adding the new input fasta_file

github.com/OpenMS/OpenMS-1 - c03dade94f7a5d725b8faa5dfba2128754cd6827 authored over 2 years ago by lennykovac <[email protected]>
Test function + a few documentation needed

github.com/OpenMS/OpenMS-1 - 92b7295e739519dd32ade9b1dad2289c54f85e4d authored over 2 years ago by kyowonjeong <[email protected]>
Test function + a few documentation needed

github.com/OpenMS/OpenMS - 92b7295e739519dd32ade9b1dad2289c54f85e4d authored over 2 years ago by kyowonjeong <[email protected]>
Merge branch 'maxquant-output' of https://github.com/vrossow/OpenMS into maxquant-output

github.com/OpenMS/OpenMS - 836a67a821000a6dd5117cae30591182acb5e871 authored over 2 years ago by Virginia Rossow <[email protected]>
Merge branch 'maxquant-output' of https://github.com/vrossow/OpenMS into maxquant-output

github.com/OpenMS/OpenMS-1 - 836a67a821000a6dd5117cae30591182acb5e871 authored over 2 years ago by Virginia Rossow <[email protected]>
change log updated for "no cleavage" of CometAdapter & XTandemAdapter

github.com/OpenMS/OpenMS-1 - 91691164ba3fb41d5bbb8702ec4528da7244282d authored over 2 years ago by zhuchcn <[email protected]>
change log updated for "no cleavage" of CometAdapter & XTandemAdapter

github.com/OpenMS/OpenMS - 91691164ba3fb41d5bbb8702ec4528da7244282d authored over 2 years ago by zhuchcn <[email protected]>
[FIX] DatabaseSuitability Tests only executed when CometAdapter is found (#6134)

* additional CMake variable for finding CometAdapter

* forget 'endif()'

* reverting accide...

github.com/OpenMS/OpenMS - 586fdefb965f2108d8f96803eb1e57fea7d46786 authored over 2 years ago by TomW <[email protected]>
[FIX] DatabaseSuitability Tests only executed when CometAdapter is found (#6134)

* additional CMake variable for finding CometAdapter

* forget 'endif()'

* reverting accide...

github.com/OpenMS/OpenMS-1 - 586fdefb965f2108d8f96803eb1e57fea7d46786 authored over 2 years ago by TomW <[email protected]>
Metavalue number of datapoints (#6128)

* initial change to get the new metavalue number_of_datapoints

* found a very stupid mistake ...

github.com/OpenMS/OpenMS-1 - d4a5b32e04c565bc1c0d012994cea12697e2e1be authored over 2 years ago by Virginia Rossow <[email protected]>
Metavalue number of datapoints (#6128)

* initial change to get the new metavalue number_of_datapoints

* found a very stupid mistake ...

github.com/OpenMS/OpenMS - d4a5b32e04c565bc1c0d012994cea12697e2e1be authored over 2 years ago by Virginia Rossow <[email protected]>
getting 1d layers to work

github.com/OpenMS/OpenMS - 0381e04bd15252f3d90a5291c2105bed4e8964e7 authored over 2 years ago by bielow <[email protected]>
getting 1d layers to work

github.com/OpenMS/OpenMS-1 - 0381e04bd15252f3d90a5291c2105bed4e8964e7 authored over 2 years ago by bielow <[email protected]>
Addressed Chris's comment : move file write parts to FORMAT.

github.com/OpenMS/OpenMS-1 - 9d8971f4edf6738f1f891cdd82d1d1aaa86c56a9 authored over 2 years ago by kyowonjeong <[email protected]>
Addressed Chris's comment : move file write parts to FORMAT.

github.com/OpenMS/OpenMS - 9d8971f4edf6738f1f891cdd82d1d1aaa86c56a9 authored over 2 years ago by kyowonjeong <[email protected]>
Addressed Chris's comment : move file write parts to FORMAT.

github.com/OpenMS/OpenMS - 39acc2e27cb3fb41f0001100308e6e7f3d7e3845 authored over 2 years ago by kyowonjeong <[email protected]>
Addressed Chris's comment : move file write parts to FORMAT.

github.com/OpenMS/OpenMS-1 - 39acc2e27cb3fb41f0001100308e6e7f3d7e3845 authored over 2 years ago by kyowonjeong <[email protected]>
fixed some errors with MQExporterHelper

github.com/OpenMS/OpenMS-1 - b84a6b93003cf729acc3d539123565b5ac77ab01 authored over 2 years ago by beschorneh32 <[email protected]>
fixed some errors with MQExporterHelper

github.com/OpenMS/OpenMS - b84a6b93003cf729acc3d539123565b5ac77ab01 authored over 2 years ago by beschorneh32 <[email protected]>
Merge pull request #6091 from jpfeuffer/feat/specAnnotationSirius

[FEATURE] Export annotated spectra from Sirius as mzml

github.com/OpenMS/OpenMS - 9b5a8e0de00c1a257d84c0cd9a01a42b6ef1fa2b authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6091 from jpfeuffer/feat/specAnnotationSirius

[FEATURE] Export annotated spectra from Sirius as mzml

github.com/OpenMS/OpenMS-1 - 9b5a8e0de00c1a257d84c0cd9a01a42b6ef1fa2b authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into feat/specAnnotationSirius

github.com/OpenMS/OpenMS-1 - b4ba11b797e3773449b6e799a22720c0e091ca11 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into feat/specAnnotationSirius

github.com/OpenMS/OpenMS - b4ba11b797e3773449b6e799a22720c0e091ca11 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
fix: added precursor mz comparison for annotateSpectra

github.com/OpenMS/OpenMS - 3b9eb35e6b90ab34431d39a84fd65a5ef4aba85b authored over 2 years ago by dmccloskey <[email protected]>
fix: added precursor mz comparison for annotateSpectra

github.com/OpenMS/OpenMS-1 - 3b9eb35e6b90ab34431d39a84fd65a5ef4aba85b authored over 2 years ago by dmccloskey <[email protected]>
Use bold for drop-down menu navigation (#27)

* changed drop down menu navigation style to File > Open example file

* changed drop-down men...

github.com/OpenMS/OpenMS-docs - 28012148582f242f1f21c3e9c82afc8e906aeaf4 authored over 2 years ago by greengypsy <[email protected]>
Merge remote-tracking branch 'upstream/develop' into uclacds-develop

github.com/OpenMS/OpenMS-1 - 3f8466d0f6a2b0690e46b4af793abbe5f1059340 authored over 2 years ago by zhuchcn <[email protected]>
Merge remote-tracking branch 'upstream/develop' into uclacds-develop

github.com/OpenMS/OpenMS - 3f8466d0f6a2b0690e46b4af793abbe5f1059340 authored over 2 years ago by zhuchcn <[email protected]>
pyopenms

github.com/OpenMS/OpenMS - e8aad846b74b6b998288725329b640c82937ca72 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
pyopenms

github.com/OpenMS/OpenMS-1 - e8aad846b74b6b998288725329b640c82937ca72 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Update README.md

github.com/OpenMS/workflows - 1c4d59ffbf1c32ef76fadbb350c04a2874edf73f authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Update README.md

github.com/OpenMS/workflows - 329ec296937facc326643daef003fef7323d294e authored over 2 years ago by Julianus Pfeuffer <[email protected]>
add 1DChromLayer

github.com/OpenMS/OpenMS-1 - 57192a0fe83df487e34edd94c2a2a7507ba542ff authored over 2 years ago by bielow <[email protected]>
add 1DChromLayer

github.com/OpenMS/OpenMS - 57192a0fe83df487e34edd94c2a2a7507ba542ff authored over 2 years ago by bielow <[email protected]>
Addressed Chris's comment : move file write parts to FORMAT.

github.com/OpenMS/OpenMS - 3cb7cf591e9f09c1050389a17774aa880e8cc2c1 authored over 2 years ago by kyowonjeong <[email protected]>
Addressed Chris's comment : move file write parts to FORMAT.

github.com/OpenMS/OpenMS-1 - 3cb7cf591e9f09c1050389a17774aa880e8cc2c1 authored over 2 years ago by kyowonjeong <[email protected]>
Merge branch 'maxquant-output' of https://github.com/vrossow/OpenMS into maxquant-output

github.com/OpenMS/OpenMS-1 - 69e554fbb8ec105eea8b3d4e42e5bd83100fc3a4 authored over 2 years ago by Virginia Rossow <[email protected]>
Merge branch 'maxquant-output' of https://github.com/vrossow/OpenMS into maxquant-output

github.com/OpenMS/OpenMS - 69e554fbb8ec105eea8b3d4e42e5bd83100fc3a4 authored over 2 years ago by Virginia Rossow <[email protected]>
Disable indeterministic tests on other platforms.

github.com/OpenMS/OpenMS - 14c6c6be0537ad82407865a1573164377497e26b authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Disable indeterministic tests on other platforms.

github.com/OpenMS/OpenMS-1 - 14c6c6be0537ad82407865a1573164377497e26b authored over 2 years ago by Julianus Pfeuffer <[email protected]>
some work on helpers and started using the helper in MQEvidenceExporter

github.com/OpenMS/OpenMS-1 - ab94d434e8aacd5ce05bc20ead586591d28be3f7 authored over 2 years ago by beschorneh32 <[email protected]>
some work on helpers and started using the helper in MQEvidenceExporter

github.com/OpenMS/OpenMS - ab94d434e8aacd5ce05bc20ead586591d28be3f7 authored over 2 years ago by beschorneh32 <[email protected]>
changed msms further

github.com/OpenMS/OpenMS - 85e57b86664a90320114a90da540170052b860c4 authored over 2 years ago by Virginia Rossow <[email protected]>
changed msms further

github.com/OpenMS/OpenMS-1 - 85e57b86664a90320114a90da540170052b860c4 authored over 2 years ago by Virginia Rossow <[email protected]>
Add tests and refactor user param names

github.com/OpenMS/OpenMS-1 - 181e36f14fe9ec11aff9531b71bd4aacc414361f authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Add tests and refactor user param names

github.com/OpenMS/OpenMS - 181e36f14fe9ec11aff9531b71bd4aacc414361f authored over 2 years ago by Julianus Pfeuffer <[email protected]>
rename

github.com/OpenMS/OpenMS - fc8b7c061ab5f06e02981cfba962500187eb6242 authored over 2 years ago by bielow <[email protected]>
rename

github.com/OpenMS/OpenMS-1 - fc8b7c061ab5f06e02981cfba962500187eb6242 authored over 2 years ago by bielow <[email protected]>
move code for projections into Layer

github.com/OpenMS/OpenMS-1 - 12735be2cd10ce7a80aa6f5d21d02f67d9923bf3 authored over 2 years ago by bielow <[email protected]>
move code for projections into Layer

github.com/OpenMS/OpenMS - 12735be2cd10ce7a80aa6f5d21d02f67d9923bf3 authored over 2 years ago by bielow <[email protected]>
working evidence & quality controll, need to addapt the tests

github.com/OpenMS/OpenMS - 47e7137df5d7190eed3501a00d1e11c7369682c1 authored over 2 years ago by lennykovac <[email protected]>
working evidence & quality controll, need to addapt the tests

github.com/OpenMS/OpenMS-1 - 47e7137df5d7190eed3501a00d1e11c7369682c1 authored over 2 years ago by lennykovac <[email protected]>
Merge remote-tracking branch 'origin/feature/FLASHDeconv' into feature/FLASHDeconv

# Conflicts:
# src/openms/include/OpenMS/FORMAT/sources.cmake

github.com/OpenMS/OpenMS-1 - acc2f1f8ad064c6dafbc20080f8303d2b350328a authored over 2 years ago by kyowonjeong <[email protected]>
Merge remote-tracking branch 'origin/feature/FLASHDeconv' into feature/FLASHDeconv

# Conflicts:
# src/openms/include/OpenMS/FORMAT/sources.cmake

github.com/OpenMS/OpenMS - acc2f1f8ad064c6dafbc20080f8303d2b350328a authored over 2 years ago by kyowonjeong <[email protected]>
SpectraMerger: recover lost codes from FLASHDeconv branch during merge

github.com/OpenMS/OpenMS - 201e842f86443780c26e14f907611bdc405a3bda authored over 2 years ago by JeeH-K <[email protected]>
SpectraMerger: recover lost codes from FLASHDeconv branch during merge

github.com/OpenMS/OpenMS-1 - 201e842f86443780c26e14f907611bdc405a3bda authored over 2 years ago by JeeH-K <[email protected]>
Merge branch 'staging' of github.com:OpenMS/OpenMS-docs into staging

github.com/OpenMS/OpenMS-docs - b5865eaf557d0d523baeafc8803129608fe557b8 authored over 2 years ago by Tapasweni Pathak <[email protected]>
Include user quickstart guide and a few fixes in templates

github.com/OpenMS/OpenMS-docs - 9fddbe3164a3ee5cf90001e781506bf6539a083a authored over 2 years ago by Tapasweni Pathak <[email protected]>
Merge pull request #22 from OpenMS/jpfeuffer-patch-1

Try lexer

github.com/OpenMS/OpenMS-docs - df4ba4cb5d828ce19f57dcf41ae950669cc70f2e authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Update installation-on-gnu-linux.md

github.com/OpenMS/OpenMS-docs - c64859c3d5c68d12c93d58267dd105eb0ebf5195 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Delete test github user account

github.com/OpenMS/OpenMS-docs - bd2f6ab0f1150e13af683653396be3f5d779c90f authored over 2 years ago by Tapasweni Pathak <[email protected]>
Fix openms documentation staging readthedocs link

github.com/OpenMS/OpenMS-docs - f9c8f2d0af87b02b872021a03baacbe01195c99d authored over 2 years ago by Tapasweni Pathak <[email protected]>
Fix images path

github.com/OpenMS/OpenMS-docs - aace40066b046213af86837a0f5011d294ba59b2 authored over 2 years ago by Tapasweni Pathak <[email protected]>
Add relative link for contributing guidelines file

github.com/OpenMS/OpenMS-docs - 54b18cfb9dfaa8c5e836f0ff5d8c642347f7c563 authored over 2 years ago by Tapasweni Pathak <[email protected]>
Include tutorials and TOPP tools introduction in index

github.com/OpenMS/OpenMS-docs - 972f6c51865185132b4b6dc6e600d62442a96640 authored over 2 years ago by Tapasweni Pathak <[email protected]>
Fix failing build

github.com/OpenMS/OpenMS-docs - e086c0ed8a68cb8cc732d95bc5222dddc5c34b65 authored over 2 years ago by Tapasweni Pathak <[email protected]>
Fix URLs not clickable

Fixes https://github.com/OpenMS/OpenMS-docs/issues/18.

github.com/OpenMS/OpenMS-docs - 4bbc02a0e677f9fed401baca03e4c5689218e886 authored over 2 years ago by Tapasweni Pathak <[email protected]>
Add logo

Partially fixes https://github.com/OpenMS/OpenMS-docs/issues/20.

github.com/OpenMS/OpenMS-docs - 81550589b115afc1bce5d6f73ecca4bec52e135f authored over 2 years ago by Tapasweni Pathak <[email protected]>
Replace MacOS with macOS

Fixes https://github.com/OpenMS/OpenMS-docs/issues/21.

github.com/OpenMS/OpenMS-docs - 3607a5ef1af3500902cce92e89b83c373e2270a3 authored over 2 years ago by Tapasweni Pathak <[email protected]>
Move FLASHDeconv file outputs under FORMAT

github.com/OpenMS/OpenMS-1 - 7a709caed8c79c4bd4fa5d050192aecf2d2f819d authored over 2 years ago by kyowonjeong <[email protected]>
Move FLASHDeconv file outputs under FORMAT

github.com/OpenMS/OpenMS - 7a709caed8c79c4bd4fa5d050192aecf2d2f819d authored over 2 years ago by kyowonjeong <[email protected]>