Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

OpenMS

Make mass spectrometry analysis accessible to anyone
Collective - Host: opensource - https://opencollective.com/openms - Website: https://openms.org - Code: https://github.com/openms

Publishing Site OpenMS/openms.de at 7179aea600f2daaf7fe6e83884e322f76a39f39c on Mon Jun 20 07:34:00 UTC 2022

github.com/OpenMS/openms.github.io - 667e60f98a29837bdf85337326a34cde13ee45d3 authored over 2 years ago by rahul799 <[email protected]>
Update README.md

github.com/OpenMS/OpenMS-website - 7179aea600f2daaf7fe6e83884e322f76a39f39c authored over 2 years ago by Rahul Agrawal <[email protected]>
Merge pull request #1 from tapaswenipathak/patch-1

https://discord.gg/wcWETcAkvS

github.com/OpenMS/.github - cedead76b8ac9619d1ee0c16191856852e8e1fc4 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
link CODE_OF_CONDUCT file

https://github.com/OpenMS/OpenMS/blob/develop/CODE_OF_CONDUCT.md

github.com/OpenMS/.github - 6b395b5be562529658e3657184c9c8d7387c7a6e authored over 2 years ago by Tapasweni Pathak <[email protected]>
https://discord.gg/wcWETcAkvS

replace w/ never expiring invite link

github.com/OpenMS/.github - 4017b5814d5a67c2e85f48c31888428b9606ce11 authored over 2 years ago by Tapasweni Pathak <[email protected]>
Create codeql-analysis.yml

github.com/OpenMS/OpenMS-docs - b8641b6a395fc2ec8aa4136da3214b63537b1843 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Update GNPS_export.rst

Download aligned mzML files.

github.com/OpenMS/pyopenms-docs - d0c856354c8eab261daf3db647ed9dca0405b151 authored over 2 years ago by axelwalter <[email protected]>
Update metabolomics_preprocessing.rst

Load aligned experiments from file for ID mapping.

github.com/OpenMS/pyopenms-docs - d3d7e1f9d6decccc253cd408f54f636e2f382990 authored over 2 years ago by axelwalter <[email protected]>
Merge remote-tracking branch 'upstream/develop' into feature/FLASHDeconv

github.com/OpenMS/OpenMS-1 - f8eab28b3ada5d570d4cebfafdf646be2711d2e9 authored over 2 years ago by JeeH-K <[email protected]>
Merge remote-tracking branch 'upstream/develop' into feature/FLASHDeconv

github.com/OpenMS/OpenMS - f8eab28b3ada5d570d4cebfafdf646be2711d2e9 authored over 2 years ago by JeeH-K <[email protected]>
Merge pull request #6182 from OpenMS/new_doc_categories_for_tools

Update TOPP.doxygen

github.com/OpenMS/OpenMS - 851f10050549407512a42c1b87f90d9d8c49f83e authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6182 from OpenMS/new_doc_categories_for_tools

Update TOPP.doxygen

github.com/OpenMS/OpenMS-1 - 851f10050549407512a42c1b87f90d9d8c49f83e authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into delete-dups

github.com/OpenMS/OpenMS-1 - ce984968136806f59ae86f35426923a66e82d561 authored over 2 years ago by Tapasweni Pathak <[email protected]>
Merge branch 'develop' into delete-dups

github.com/OpenMS/OpenMS - ce984968136806f59ae86f35426923a66e82d561 authored over 2 years ago by Tapasweni Pathak <[email protected]>
fix a grammatical error

Co-authored-by: Julianus Pfeuffer <[email protected]>

github.com/OpenMS/OpenMS - f14a897e31e76008c86e55384f4b72efd491e62c authored over 2 years ago by Tapasweni Pathak <[email protected]>
fix a grammatical error

Co-authored-by: Julianus Pfeuffer <[email protected]>

github.com/OpenMS/OpenMS-1 - f14a897e31e76008c86e55384f4b72efd491e62c authored over 2 years ago by Tapasweni Pathak <[email protected]>
Merge pull request #6186 from greengypsy/fix_indentation_developer_faq

fixed indentation in developer-faq.doxygen by adding closing ul tag

github.com/OpenMS/OpenMS-1 - 7a84a045758b2704b60122a08614c7b4a2d40bdc authored over 2 years ago by greengypsy <[email protected]>
Merge pull request #6186 from greengypsy/fix_indentation_developer_faq

fixed indentation in developer-faq.doxygen by adding closing ul tag

github.com/OpenMS/OpenMS - 7a84a045758b2704b60122a08614c7b4a2d40bdc authored over 2 years ago by greengypsy <[email protected]>
https://openms.readthedocs.io/en/develop

github.com/OpenMS/OpenMS-docs - 609cdb6959644308eccd3c867cfcbaa6808fc960 authored over 2 years ago by Tapasweni Pathak <[email protected]>
fixed indentation in developer-faq.doxygen by adding closing ul tag

github.com/OpenMS/OpenMS - 4b71662e88ee048adbd6912e6ca664e02346604f authored over 2 years ago by greengypsy <[email protected]>
fixed indentation in developer-faq.doxygen by adding closing ul tag

github.com/OpenMS/OpenMS-1 - 4b71662e88ee048adbd6912e6ca664e02346604f authored over 2 years ago by greengypsy <[email protected]>
Apply suggestions from code review

Co-authored-by: Julianus Pfeuffer <[email protected]>

github.com/OpenMS/OpenMS-1 - 8adb0d587092f8c2aba89c854b15c60a6fb09ad9 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Apply suggestions from code review

Co-authored-by: Julianus Pfeuffer <[email protected]>

github.com/OpenMS/OpenMS - 8adb0d587092f8c2aba89c854b15c60a6fb09ad9 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Publishing Site OpenMS/openms.de at 055a475db9af1afa35b0d50c2c1f18a234de4b4e on Wed Jun 15 12:41:02 UTC 2022

github.com/OpenMS/openms.github.io - 296f1459dd650690af13a44e58792e664e8754fa authored over 2 years ago by rahul799 <[email protected]>
Publishing Site OpenMS/openms.de at 0635ed17803fb34b4e5d2780dac638e586e3a609 on Wed Jun 15 12:36:20 UTC 2022

github.com/OpenMS/openms.github.io - 43a7e5877632ebb4d1d5e3f7ecfb5e44325e551e authored over 2 years ago by rahul799 <[email protected]>
( submenu + help request ) added

github.com/OpenMS/OpenMS-website - 0635ed17803fb34b4e5d2780dac638e586e3a609 authored over 2 years ago by rahul799 <[email protected]>
fixing typo

github.com/OpenMS/OpenMS-1 - 9d13c7cd1e50fd7ccb943470f816ff6038f2ae54 authored over 2 years ago by JeeH-K <[email protected]>
fixing typo

github.com/OpenMS/OpenMS - 9d13c7cd1e50fd7ccb943470f816ff6038f2ae54 authored over 2 years ago by JeeH-K <[email protected]>
Update TOPP.doxygen

github.com/OpenMS/OpenMS - 738509fb1243d9f4907efa8fae19f9e3b02b6877 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Update TOPP.doxygen

github.com/OpenMS/OpenMS-1 - 738509fb1243d9f4907efa8fae19f9e3b02b6877 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6180 from bertrandboudaud/fix/unknown_feature_counter

fixed compilation error unknown_feature_counter unused variable

github.com/OpenMS/OpenMS-1 - 381879df9c4d94865746a0655fe8a11072897b01 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6180 from bertrandboudaud/fix/unknown_feature_counter

fixed compilation error unknown_feature_counter unused variable

github.com/OpenMS/OpenMS - 381879df9c4d94865746a0655fe8a11072897b01 authored over 2 years ago by Timo Sachsenberg <[email protected]>
fixed compilation error unknown_feature_counter unused variable

github.com/OpenMS/OpenMS - 0fbf19089bf92fb03967cd848f02fcb9f9010188 authored over 2 years ago by bertrandboudaud <[email protected]>
fixed compilation error unknown_feature_counter unused variable

github.com/OpenMS/OpenMS-1 - 0fbf19089bf92fb03967cd848f02fcb9f9010188 authored over 2 years ago by bertrandboudaud <[email protected]>
fixing typo

github.com/OpenMS/OpenMS-1 - 730c626bb25c5df4919f5d86e08185f20e60f42c authored over 2 years ago by JeeH-K <[email protected]>
fixing typo

github.com/OpenMS/OpenMS - 730c626bb25c5df4919f5d86e08185f20e60f42c authored over 2 years ago by JeeH-K <[email protected]>
Merge branch 'feature/FLASHDeconv' into feature/FLASHDeconvOnly

github.com/OpenMS/OpenMS - d02f74aed47ae2510cb52aab8a82963b490aa148 authored over 2 years ago by JeeH-K <[email protected]>
Merge branch 'feature/FLASHDeconv' into feature/FLASHDeconvOnly

github.com/OpenMS/OpenMS-1 - d02f74aed47ae2510cb52aab8a82963b490aa148 authored over 2 years ago by JeeH-K <[email protected]>
Merge remote-tracking branch 'upstream/develop' into feature/FLASHDeconvOnly

github.com/OpenMS/OpenMS-1 - a24a02457c8da8614477ccaf74775cd895c5393d authored over 2 years ago by JeeH-K <[email protected]>
Merge remote-tracking branch 'upstream/develop' into feature/FLASHDeconvOnly

github.com/OpenMS/OpenMS - a24a02457c8da8614477ccaf74775cd895c5393d authored over 2 years ago by JeeH-K <[email protected]>
polishing codes to remove warnings

github.com/OpenMS/OpenMS - be4647695b6b21c9f146748d33991ccfe31d1eb4 authored over 2 years ago by JeeH-K <[email protected]>
polishing codes to remove warnings

github.com/OpenMS/OpenMS-1 - be4647695b6b21c9f146748d33991ccfe31d1eb4 authored over 2 years ago by JeeH-K <[email protected]>
Merge branch 'develop' into fix/psmpepfdr_plfq

github.com/OpenMS/OpenMS-1 - 68bf5b52c0b934cbeb8d4fdf0b40b5a18deb318f authored over 2 years ago by jpfeuffer <[email protected]>
Merge branch 'develop' into fix/psmpepfdr_plfq

github.com/OpenMS/OpenMS - 68bf5b52c0b934cbeb8d4fdf0b40b5a18deb318f authored over 2 years ago by jpfeuffer <[email protected]>
[FIX] Some docu changes. Always keep all PSMs also with Bayes.

github.com/OpenMS/OpenMS - 35f4a7b709d8042e9801975f2198f495992ab2ca authored over 2 years ago by jpfeuffer <[email protected]>
[FIX] Some docu changes. Always keep all PSMs also with Bayes.

github.com/OpenMS/OpenMS-1 - 35f4a7b709d8042e9801975f2198f495992ab2ca authored over 2 years ago by jpfeuffer <[email protected]>
Update metabolomics_preprocessing.rst

fix issue with code block

github.com/OpenMS/pyopenms-docs - e0f4fcd559f826dc362f48d85dddc12b323d1dcd authored over 2 years ago by axelwalter <[email protected]>
Merge pull request #6174 from OpenMS/fix/better_error_message

Update XMLHandler.cpp

github.com/OpenMS/OpenMS-1 - 97d7742022572cd9f1eeae92e9b440ae7dc9e843 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6174 from OpenMS/fix/better_error_message

Update XMLHandler.cpp

github.com/OpenMS/OpenMS - 97d7742022572cd9f1eeae92e9b440ae7dc9e843 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #286 from axelwalter/feature/GNPSExport-tutorial

[Feature] GNPS and untargeted metabolomics tutorials

github.com/OpenMS/pyopenms-docs - 8b72f4a6b937eaf9bc7d0fd4f0f9e4a99e5ca87b authored over 2 years ago by axelwalter <[email protected]>
add GNPS and untargeted metabolomics

github.com/OpenMS/pyopenms-docs - d2d1637274f274e0b65bae9a30c981535373921e authored over 2 years ago by axelwalter <[email protected]>
Merge branch 'develop' into feature/FLASHDeconv

github.com/OpenMS/OpenMS - d0b3123cb8666a8f56a6b83391f0694bf07ad29b authored over 2 years ago by JeeH-K <[email protected]>
Merge branch 'develop' into feature/FLASHDeconv

github.com/OpenMS/OpenMS-1 - d0b3123cb8666a8f56a6b83391f0694bf07ad29b authored over 2 years ago by JeeH-K <[email protected]>
fixing bugs for ctests

github.com/OpenMS/OpenMS-1 - ff484ed189480c27a2047e9b5676502b5b65b1cf authored over 2 years ago by JeeH-K <[email protected]>
fixing bugs for ctests

github.com/OpenMS/OpenMS - ff484ed189480c27a2047e9b5676502b5b65b1cf authored over 2 years ago by JeeH-K <[email protected]>
Merge pull request #6106 from bertrandboudaud/feature/searchSpectrum_extended

Feature/search spectrum extended

github.com/OpenMS/OpenMS - 1d4f5c9f50346e5bffa344977acf2e28e6c0d797 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6106 from bertrandboudaud/feature/searchSpectrum_extended

Feature/search spectrum extended

github.com/OpenMS/OpenMS-1 - 1d4f5c9f50346e5bffa344977acf2e28e6c0d797 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Update XMLHandler.cpp

better error message if run identifiers are not unique

github.com/OpenMS/OpenMS-1 - e5d7f19e6ac2d3e21e6bf11300f540095fca1f90 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Update XMLHandler.cpp

better error message if run identifiers are not unique

github.com/OpenMS/OpenMS - e5d7f19e6ac2d3e21e6bf11300f540095fca1f90 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Cleaned up some comments

github.com/OpenMS/OpenMS - ea3a6f945c59625224e142124bb4ac90aaccb669 authored over 2 years ago by Virginia Rossow <[email protected]>
Cleaned up some comments

github.com/OpenMS/OpenMS-1 - ea3a6f945c59625224e142124bb4ac90aaccb669 authored over 2 years ago by Virginia Rossow <[email protected]>
Merge pull request #6145 from greengypsy/convert_to_doxygen

Add OpenMS wiki pages to OpenMS API reference Doxygen documentation

github.com/OpenMS/OpenMS - 831ee90f501f53c9d5496a100b3b869b1d2acf15 authored over 2 years ago by greengypsy <[email protected]>
Merge pull request #6145 from greengypsy/convert_to_doxygen

Add OpenMS wiki pages to OpenMS API reference Doxygen documentation

github.com/OpenMS/OpenMS-1 - 831ee90f501f53c9d5496a100b3b869b1d2acf15 authored over 2 years ago by greengypsy <[email protected]>
Merge branch 'fix/psmpepfdr_plfq' of https://github.com/OpenMS/OpenMS into fix/psmpepfdr_plfq

github.com/OpenMS/OpenMS-1 - 3b27b3db423d5110c71fff5522b11e9ea0d16a19 authored over 2 years ago by jpfeuffer <[email protected]>
Merge branch 'fix/psmpepfdr_plfq' of https://github.com/OpenMS/OpenMS into fix/psmpepfdr_plfq

github.com/OpenMS/OpenMS - 3b27b3db423d5110c71fff5522b11e9ea0d16a19 authored over 2 years ago by jpfeuffer <[email protected]>
[FIX] FDR applyBasic. Add pepFDR to PLFQ.

github.com/OpenMS/OpenMS - 0072ee36622dcb3befcca2c956f04c8b32a443b6 authored over 2 years ago by jpfeuffer <[email protected]>
[FIX] FDR applyBasic. Add pepFDR to PLFQ.

github.com/OpenMS/OpenMS-1 - 0072ee36622dcb3befcca2c956f04c8b32a443b6 authored over 2 years ago by jpfeuffer <[email protected]>
[FIX] FDR applyBasic. Add pepFDR to PLFQ.

github.com/OpenMS/OpenMS-1 - 56345ff458983139d29a8cf4985233239a5746cb authored over 2 years ago by jpfeuffer <[email protected]>
[FIX] FDR applyBasic. Add pepFDR to PLFQ.

github.com/OpenMS/OpenMS - 56345ff458983139d29a8cf4985233239a5746cb authored over 2 years ago by jpfeuffer <[email protected]>
[FEATURE] Add iBAQ to ProteinQuantifier (#6107)

* update

* added iBAQ to ProteinQuantifier

* removed outdated iBAQQuantitation.cpp

* re...

github.com/OpenMS/OpenMS - ab260e1aad2b23c81ea50a62f3ebf69b6b7a6a13 authored over 2 years ago by Matteo Pilz <[email protected]>
[FEATURE] Add iBAQ to ProteinQuantifier (#6107)

* update

* added iBAQ to ProteinQuantifier

* removed outdated iBAQQuantitation.cpp

* re...

github.com/OpenMS/OpenMS-1 - ab260e1aad2b23c81ea50a62f3ebf69b6b7a6a13 authored over 2 years ago by Matteo Pilz <[email protected]>
infra-fix: don't lint deleted files (#6172)

github.com/OpenMS/OpenMS-1 - 3af93c27d4b96291498e41cb24aaf3b9b81cbe0b authored over 2 years ago by Simon Gene Gottlieb <[email protected]>
infra-fix: don't lint deleted files (#6172)

github.com/OpenMS/OpenMS - 3af93c27d4b96291498e41cb24aaf3b9b81cbe0b authored over 2 years ago by Simon Gene Gottlieb <[email protected]>
Merge pull request #6171 from SGSSGene/fix/github-workflow

Fix/GitHub workflow

github.com/OpenMS/OpenMS - 9cea4b51096f54e6823545d185a047676f89eb51 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6171 from SGSSGene/fix/github-workflow

Fix/GitHub workflow

github.com/OpenMS/OpenMS-1 - 9cea4b51096f54e6823545d185a047676f89eb51 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
admonition indent

github.com/OpenMS/OpenMS-docs - f17bfdaa3e668ba4d8da2aecadb3c0b1c40c3867 authored over 2 years ago by Tapasweni Pathak <[email protected]>
Address review comments by @matchy233, @pranavich18, and @axelwalter. (#84)

* Address review comments by @matchy233, @pranavich18, and @axelwalter.

Ref https://github.co...

github.com/OpenMS/OpenMS-docs - fde80240e8fcbae2bb69d1bb534d1df37dc79d66 authored over 2 years ago by Tapasweni Pathak <[email protected]>
a few fixes here and there for staging to main merge (#87)

* Address review comments by @greengypsy

Ref: https://github.com/OpenMS/OpenMS-docs/pull/65.
...

github.com/OpenMS/OpenMS-docs - 61abe5ac1917f84fd2aeda8a4da1dc7ed900f4c9 authored over 2 years ago by Tapasweni Pathak <[email protected]>
update: github workflow uses tj-actions and DoozyX

github.com/OpenMS/OpenMS-1 - 005a0fbb958dc7926f96f53561d28245bb4b4dda authored over 2 years ago by Simon Gene Gottlieb <[email protected]>
update: github workflow uses tj-actions and DoozyX

github.com/OpenMS/OpenMS - 005a0fbb958dc7926f96f53561d28245bb4b4dda authored over 2 years ago by Simon Gene Gottlieb <[email protected]>
infra-fix: don't lint deleted files

github.com/OpenMS/OpenMS - ea6a0f18f06b851c5b85a85782ac4425abba57ee authored over 2 years ago by Simon Gene Gottlieb <[email protected]>
infra-fix: don't lint deleted files

github.com/OpenMS/OpenMS-1 - ea6a0f18f06b851c5b85a85782ac4425abba57ee authored over 2 years ago by Simon Gene Gottlieb <[email protected]>
add: remaining toppview-introduction content

Closes https://github.com/OpenMS/OpenMS-docs/issues/76.

github.com/OpenMS/OpenMS-docs - dccf2841504c3745c6fe32ef41a9f37d7afd2a37 authored over 2 years ago by Tapasweni Pathak <[email protected]>
fixed indentation and replaced {cpp} and {sh} with {.cpp} and {.sh} as discussed

github.com/OpenMS/OpenMS-1 - 4c030a2659c9ac2176c93e38d91bc903b892ea6c authored over 2 years ago by greengypsy <[email protected]>
fixed indentation and replaced {cpp} and {sh} with {.cpp} and {.sh} as discussed

github.com/OpenMS/OpenMS - 4c030a2659c9ac2176c93e38d91bc903b892ea6c authored over 2 years ago by greengypsy <[email protected]>
add peptide level fdr/q-values (#6132)

* add peptide level fdr/q-values

* use emplace

* add option to enable/disable FDR calcuati...

github.com/OpenMS/OpenMS - 5f93c53c7201a8a84d5475354a8b27a50a006655 authored over 2 years ago by Timo Sachsenberg <[email protected]>
add peptide level fdr/q-values (#6132)

* add peptide level fdr/q-values

* use emplace

* add option to enable/disable FDR calcuati...

github.com/OpenMS/OpenMS-1 - 5f93c53c7201a8a84d5475354a8b27a50a006655 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6169 from axelwalter/fix/GNPS-meta-values-from-consensusmap

[Fix] GNPSMetaValueFile get mzML file names from ConsensusMap

github.com/OpenMS/OpenMS-1 - 8e4aae3815c7a0dcd8ba6a03143af5b07f56cbe0 authored over 2 years ago by axelwalter <[email protected]>
Merge pull request #6169 from axelwalter/fix/GNPS-meta-values-from-consensusmap

[Fix] GNPSMetaValueFile get mzML file names from ConsensusMap

github.com/OpenMS/OpenMS - 8e4aae3815c7a0dcd8ba6a03143af5b07f56cbe0 authored over 2 years ago by axelwalter <[email protected]>
Merge branch 'develop' into feature/searchSpectrum_extended

github.com/OpenMS/OpenMS - 25837556a8b3ef717a93d88a81eb198a5b2c18f2 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into feature/searchSpectrum_extended

github.com/OpenMS/OpenMS-1 - 25837556a8b3ef717a93d88a81eb198a5b2c18f2 authored over 2 years ago by Timo Sachsenberg <[email protected]>
alternative method to get mzML file paths

github.com/OpenMS/OpenMS-1 - 1181dd2e6c422fb34033d7441d1c9133f013d796 authored over 2 years ago by axelwalter <[email protected]>
alternative method to get mzML file paths

github.com/OpenMS/OpenMS - 1181dd2e6c422fb34033d7441d1c9133f013d796 authored over 2 years ago by axelwalter <[email protected]>
update tests

github.com/OpenMS/OpenMS - 1154c77a2ef8d1e332bfd1897116fb4d576fd0ed authored over 2 years ago by axelwalter <[email protected]>
update tests

github.com/OpenMS/OpenMS-1 - 1154c77a2ef8d1e332bfd1897116fb4d576fd0ed authored over 2 years ago by axelwalter <[email protected]>
use ConsensusMap as input for GNPSMetaValueFile

github.com/OpenMS/OpenMS-1 - 654dee6b85e9b8664112c5bcfecd412afafb1e5b authored over 2 years ago by axelwalter <[email protected]>
use ConsensusMap as input for GNPSMetaValueFile

github.com/OpenMS/OpenMS - 654dee6b85e9b8664112c5bcfecd412afafb1e5b authored over 2 years ago by axelwalter <[email protected]>