Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

OpenMS

Make mass spectrometry analysis accessible to anyone
Collective - Host: opensource - https://opencollective.com/openms - Website: https://openms.org - Code: https://github.com/openms

Update black.yaml

update actions

github.com/OpenMS/autowrap - 232e1da385b0ca16ade1cd815151cd69c24ef3f2 authored almost 2 years ago by Samuel Wein <[email protected]>
Update ci-autowrap.yaml

update actions

github.com/OpenMS/autowrap - e4fd964dc4eaabbd7af4ff6e152eaed1063fb1ac authored almost 2 years ago by Samuel Wein <[email protected]>
Update release-autowrap.yaml

update actions for node 16

github.com/OpenMS/autowrap - bd7f9de2ecfa23813ba880cc842f58ba49ac7e22 authored almost 2 years ago by Samuel Wein <[email protected]>
Update pyopenms-wheels.yml

update actions

github.com/OpenMS/OpenMS - 25f20bd3442a46ef409293b8cb1bb8c6bbcb7e4a authored almost 2 years ago by Samuel Wein <[email protected]>
Update pyopenms-wheels.yml

update actions

github.com/OpenMS/OpenMS-1 - 25f20bd3442a46ef409293b8cb1bb8c6bbcb7e4a authored almost 2 years ago by Samuel Wein <[email protected]>
Update openms_clang_format_add_and_commit.yml

update actions

github.com/OpenMS/OpenMS-1 - c02074fed48f5d38b6e240888c092678c64c8bdc authored almost 2 years ago by Samuel Wein <[email protected]>
Update openms_clang_format_add_and_commit.yml

update actions

github.com/OpenMS/OpenMS - c02074fed48f5d38b6e240888c092678c64c8bdc authored almost 2 years ago by Samuel Wein <[email protected]>
Update openms_clang_format.yml

update actiona

github.com/OpenMS/OpenMS - e57db2b172e3809c8593c6f8e109e2392b7b33d8 authored almost 2 years ago by Samuel Wein <[email protected]>
Update openms_clang_format.yml

update actiona

github.com/OpenMS/OpenMS-1 - e57db2b172e3809c8593c6f8e109e2392b7b33d8 authored almost 2 years ago by Samuel Wein <[email protected]>
update fingerid test

github.com/OpenMS/OpenMS-1 - 3a86233e9c640dab066feccb8a683ed4af01cfdc authored almost 2 years ago by axelwalter <[email protected]>
update fingerid test

github.com/OpenMS/OpenMS - 3a86233e9c640dab066feccb8a683ed4af01cfdc authored almost 2 years ago by axelwalter <[email protected]>
Update openms-ci.yml

update jwlawson/actions-setup-cmake for node 16

github.com/OpenMS/OpenMS - e62e56246e1baaa2aaf3159964c7a7ae942a0664 authored almost 2 years ago by Samuel Wein <[email protected]>
Update openms-ci.yml

update jwlawson/actions-setup-cmake for node 16

github.com/OpenMS/OpenMS-1 - e62e56246e1baaa2aaf3159964c7a7ae942a0664 authored almost 2 years ago by Samuel Wein <[email protected]>
turn SIRIUS test off

local test will fail without login

github.com/OpenMS/OpenMS-1 - 5a23c04f679afbc5d51efbc8b45e012e95179db6 authored almost 2 years ago by axelwalter <[email protected]>
turn SIRIUS test off

local test will fail without login

github.com/OpenMS/OpenMS - 5a23c04f679afbc5d51efbc8b45e012e95179db6 authored almost 2 years ago by axelwalter <[email protected]>
Update dockerdeploy.yml

update actions

github.com/OpenMS/OpenMS - 3428c29de09276be47726163292325df2c6c9c02 authored almost 2 years ago by Samuel Wein <[email protected]>
Update dockerdeploy.yml

update actions

github.com/OpenMS/OpenMS-1 - 3428c29de09276be47726163292325df2c6c9c02 authored almost 2 years ago by Samuel Wein <[email protected]>
Update cppcheck.yml

update cppcheck versions

github.com/OpenMS/OpenMS-1 - 4101d32ee34eb1a3f966e6a9c9b84669bf455f20 authored almost 2 years ago by Samuel Wein <[email protected]>
Update cppcheck.yml

update cppcheck versions

github.com/OpenMS/OpenMS - 4101d32ee34eb1a3f966e6a9c9b84669bf455f20 authored almost 2 years ago by Samuel Wein <[email protected]>
Update openms-ci.yml

Bump `actions/cache` and `actions/checkout` to v3

github.com/OpenMS/OpenMS - 3465b9775e5afc2f0a720dfa2d34ddc780fbc55b authored almost 2 years ago by Samuel Wein <[email protected]>
Update openms-ci.yml

Bump `actions/cache` and `actions/checkout` to v3

github.com/OpenMS/OpenMS-1 - 3465b9775e5afc2f0a720dfa2d34ddc780fbc55b authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6393 from poshul/feature/new_cyclophosphate

[feature] enable 3' cyclophosphate as a RNA mod

github.com/OpenMS/OpenMS-1 - 348b4ad6b5c6da7026f668a3f9aac3b0e44ba342 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6393 from poshul/feature/new_cyclophosphate

[feature] enable 3' cyclophosphate as a RNA mod

github.com/OpenMS/OpenMS - 348b4ad6b5c6da7026f668a3f9aac3b0e44ba342 authored almost 2 years ago by Samuel Wein <[email protected]>
fix nightlies

github.com/OpenMS/OpenMS - 2f63f3f3418fe174d3673b6f627667f64ad7c233 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
fix nightlies

github.com/OpenMS/OpenMS-1 - 2f63f3f3418fe174d3673b6f627667f64ad7c233 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into refact_toppview

github.com/OpenMS/OpenMS-1 - d55a2dbe9d1e53053c640b14b41e275fd3cadc5b authored almost 2 years ago by Chris Bielow <[email protected]>
Merge branch 'develop' into refact_toppview

github.com/OpenMS/OpenMS - d55a2dbe9d1e53053c640b14b41e275fd3cadc5b authored almost 2 years ago by Chris Bielow <[email protected]>
Merge pull request #6396 from OpenMS/feature/count_ics

Feature/count_ics

github.com/OpenMS/OpenMS - be3cbd39d26e7d94dd21b4aef59a89feb9519403 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6396 from OpenMS/feature/count_ics

Feature/count_ics

github.com/OpenMS/OpenMS-1 - be3cbd39d26e7d94dd21b4aef59a89feb9519403 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6401 from OpenMS/fix/pyxWarnings

[FIX] fixes some signedness comparison warnings in pyx files

github.com/OpenMS/OpenMS-1 - 1b50da23dbe7ab3e81fb5c6b3e43ccd31f180829 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6401 from OpenMS/fix/pyxWarnings

[FIX] fixes some signedness comparison warnings in pyx files

github.com/OpenMS/OpenMS - 1b50da23dbe7ab3e81fb5c6b3e43ccd31f180829 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6402 from cbielow/fix_dtor

add d'tor to fix LNK2001: unresolved external symbol "public: virtual…

github.com/OpenMS/OpenMS - 350762eb38e603a33608d6604a64410576556d81 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6402 from cbielow/fix_dtor

add d'tor to fix LNK2001: unresolved external symbol "public: virtual…

github.com/OpenMS/OpenMS-1 - 350762eb38e603a33608d6604a64410576556d81 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge branch 'develop' into fix_dtor

github.com/OpenMS/OpenMS-1 - 23f13d89b03416c3d6dbdd025fcb696b0a0fe042 authored almost 2 years ago by Chris Bielow <[email protected]>
Merge branch 'develop' into fix_dtor

github.com/OpenMS/OpenMS - 23f13d89b03416c3d6dbdd025fcb696b0a0fe042 authored almost 2 years ago by Chris Bielow <[email protected]>
add d'tor to fix LNK2001: unresolved external symbol "public: virtual void * __cdecl OpenMS::MSExperiment::`scalar deleting destructor'

some code rearrangements
some docs

github.com/OpenMS/OpenMS - 961a198047ae248c0fade14fd6e1f7412bc794cb authored almost 2 years ago by bielow <[email protected]>
add d'tor to fix LNK2001: unresolved external symbol "public: virtual void * __cdecl OpenMS::MSExperiment::`scalar deleting destructor'

some code rearrangements
some docs

github.com/OpenMS/OpenMS-1 - 961a198047ae248c0fade14fd6e1f7412bc794cb authored almost 2 years ago by bielow <[email protected]>
Update src/pyOpenMS/pxds/EnzymaticDigestion.pxd

Co-authored-by: Julianus Pfeuffer <[email protected]>

github.com/OpenMS/OpenMS-1 - 5666786c16f03c75bd450af54cf58a04f4da4548 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update src/pyOpenMS/pxds/EnzymaticDigestion.pxd

Co-authored-by: Julianus Pfeuffer <[email protected]>

github.com/OpenMS/OpenMS - 5666786c16f03c75bd450af54cf58a04f4da4548 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
[nop] Removed lots of commented out code, a lot of this looks probably worthwhile to keep on a separate branch, but should not be merged

github.com/OpenMS/OpenMS - bc849f2cd70a542b052c1ab0ebd3d938b7e3b947 authored almost 2 years ago by Samuel Wein <[email protected]>
[nop] Removed lots of commented out code, a lot of this looks probably worthwhile to keep on a separate branch, but should not be merged

github.com/OpenMS/OpenMS-1 - bc849f2cd70a542b052c1ab0ebd3d938b7e3b947 authored almost 2 years ago by Samuel Wein <[email protected]>
minor C17 refresh

github.com/OpenMS/OpenMS-1 - b56ec1b38b0c084f30d92d15a9348ac6fe50f4f9 authored almost 2 years ago by bielow <[email protected]>
minor C17 refresh

github.com/OpenMS/OpenMS - b56ec1b38b0c084f30d92d15a9348ac6fe50f4f9 authored almost 2 years ago by bielow <[email protected]>
use new (colored) gradient for log-intensity

github.com/OpenMS/OpenMS - 687dc948c1374d04d0e353cd1a71f0893ed21b75 authored almost 2 years ago by bielow <[email protected]>
use new (colored) gradient for log-intensity

github.com/OpenMS/OpenMS-1 - 687dc948c1374d04d0e353cd1a71f0893ed21b75 authored almost 2 years ago by bielow <[email protected]>
unused parameters

github.com/OpenMS/OpenMS-1 - 6424eb3caeca429355b86ccf473cda719443b94e authored almost 2 years ago by bielow <[email protected]>
unused parameters

github.com/OpenMS/OpenMS - 6424eb3caeca429355b86ccf473cda719443b94e authored almost 2 years ago by bielow <[email protected]>
update parameters

empty string and -1 for not passing parameter to command need to be in valid range

github.com/OpenMS/OpenMS - 6a294ba73a30fab92fa85454d97ce8ecba8b8828 authored almost 2 years ago by axelwalter <[email protected]>
set sirius compound and tree timeouts to 100s

github.com/OpenMS/OpenMS - aa0b7468d4bc1166c05e70143d72bb43c90f8b30 authored almost 2 years ago by axelwalter <[email protected]>
use correct SIRIUS default parameters in SiriusAdapter

github.com/OpenMS/OpenMS - 652a80b66ec7bfab859c5c6b126d8526cbd8bffe authored almost 2 years ago by axelwalter <[email protected]>
CSI:FingerID name changed from fingerid to fingerprint

github.com/OpenMS/OpenMS - be6d6c92d4e17170eec01c3198ed166173ef3f48 authored almost 2 years ago by axelwalter <[email protected]>
use original sirius 5.6 parameters

write only deviating parameters to sirius CLI tool

github.com/OpenMS/OpenMS - 84250f12c6abc9d39619b53db874caa13683b10a authored almost 2 years ago by axelwalter <[email protected]>
removing obsolete FingerID parameters

github.com/OpenMS/OpenMS - 355a488eb7b7d156e69389fad0d14db2a8d6f834 authored almost 2 years ago by axelwalter <[email protected]>
add sirius:candidates parameter to tests

github.com/OpenMS/OpenMS - f715b01afc09dd437a63022a5b8385a2caf2edda authored almost 2 years ago by axelwalter <[email protected]>
move write-summaries command to the end

github.com/OpenMS/OpenMS - 54323bfda53658cc6b21b716162e6ebedc6082b2 authored almost 2 years ago by axelwalter <[email protected]>
update tests

github.com/OpenMS/OpenMS - 0973f552d502ae3da49d8b9c8fef2045a0c9a4cc authored almost 2 years ago by axelwalter <[email protected]>
adapt to changes in fingerid

- number of candidates for sirius and fingerid are the same now
- fingerid done with fingerprint ...

github.com/OpenMS/OpenMS - f92256fe9b5d2b6e5a54534eb498f5d184fcec2d authored almost 2 years ago by axelwalter <[email protected]>
update THIRDPARTY with sirius 5.6.1

github.com/OpenMS/OpenMS - 59a7615ca571a1469ad15c132bd4aaf8b6f5a283 authored almost 2 years ago by axelwalter <[email protected]>
update tests

whitelist compound with varying sum formula results

github.com/OpenMS/OpenMS - 2b2a3c1188dd69605acff67531a5c593e8871370 authored almost 2 years ago by axelwalter <[email protected]>
add flag for uncompressed sirius project space

github.com/OpenMS/OpenMS - cbdfd46c7629ab58f539040b4bf8ce8de1253d65 authored almost 2 years ago by axelwalter <[email protected]>
update THIRDPARTY with sirius 5.6.1

github.com/OpenMS/OpenMS-1 - 59a7615ca571a1469ad15c132bd4aaf8b6f5a283 authored almost 2 years ago by axelwalter <[email protected]>
update tests

github.com/OpenMS/OpenMS-1 - 0973f552d502ae3da49d8b9c8fef2045a0c9a4cc authored almost 2 years ago by axelwalter <[email protected]>
CSI:FingerID name changed from fingerid to fingerprint

github.com/OpenMS/OpenMS-1 - be6d6c92d4e17170eec01c3198ed166173ef3f48 authored almost 2 years ago by axelwalter <[email protected]>
removing obsolete FingerID parameters

github.com/OpenMS/OpenMS-1 - 355a488eb7b7d156e69389fad0d14db2a8d6f834 authored almost 2 years ago by axelwalter <[email protected]>
adapt to changes in fingerid

- number of candidates for sirius and fingerid are the same now
- fingerid done with fingerprint ...

github.com/OpenMS/OpenMS-1 - f92256fe9b5d2b6e5a54534eb498f5d184fcec2d authored almost 2 years ago by axelwalter <[email protected]>
use original sirius 5.6 parameters

write only deviating parameters to sirius CLI tool

github.com/OpenMS/OpenMS-1 - 84250f12c6abc9d39619b53db874caa13683b10a authored almost 2 years ago by axelwalter <[email protected]>
add sirius:candidates parameter to tests

github.com/OpenMS/OpenMS-1 - f715b01afc09dd437a63022a5b8385a2caf2edda authored almost 2 years ago by axelwalter <[email protected]>
update parameters

empty string and -1 for not passing parameter to command need to be in valid range

github.com/OpenMS/OpenMS-1 - 6a294ba73a30fab92fa85454d97ce8ecba8b8828 authored almost 2 years ago by axelwalter <[email protected]>
update tests

whitelist compound with varying sum formula results

github.com/OpenMS/OpenMS-1 - 2b2a3c1188dd69605acff67531a5c593e8871370 authored almost 2 years ago by axelwalter <[email protected]>
set sirius compound and tree timeouts to 100s

github.com/OpenMS/OpenMS-1 - aa0b7468d4bc1166c05e70143d72bb43c90f8b30 authored almost 2 years ago by axelwalter <[email protected]>
use correct SIRIUS default parameters in SiriusAdapter

github.com/OpenMS/OpenMS-1 - 652a80b66ec7bfab859c5c6b126d8526cbd8bffe authored almost 2 years ago by axelwalter <[email protected]>
move write-summaries command to the end

github.com/OpenMS/OpenMS-1 - 54323bfda53658cc6b21b716162e6ebedc6082b2 authored almost 2 years ago by axelwalter <[email protected]>
add flag for uncompressed sirius project space

github.com/OpenMS/OpenMS-1 - cbdfd46c7629ab58f539040b4bf8ce8de1253d65 authored almost 2 years ago by axelwalter <[email protected]>
[nop] finished reordering of imports

github.com/OpenMS/OpenMS-1 - bdef9f8ce95a6c2408e938331be704e31fd72cbb authored almost 2 years ago by Samuel Wein <[email protected]>
[nop] finished reordering of imports

github.com/OpenMS/OpenMS - bdef9f8ce95a6c2408e938331be704e31fd72cbb authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6398 from OpenMS/fix/newpyomsapi

[FIX] some fixes for reduced pyopenms API

github.com/OpenMS/OpenMS - d4bc09f7ae97d3115997ade2b05ec9defb92df93 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6398 from OpenMS/fix/newpyomsapi

[FIX] some fixes for reduced pyopenms API

github.com/OpenMS/OpenMS-1 - d4bc09f7ae97d3115997ade2b05ec9defb92df93 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
[FIX] fixes some signedness comparison warnings in pyx files

github.com/OpenMS/OpenMS-1 - 01de5285ddb27e94480af82a0bd37fda9298e2ff authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
[FIX] fixes some signedness comparison warnings in pyx files

github.com/OpenMS/OpenMS - 01de5285ddb27e94480af82a0bd37fda9298e2ff authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
[fix] patched values for DeconvolutedSpectrum_test. THIS SHOULD BE CHECKED

github.com/OpenMS/OpenMS - d01409335e996a6d61c419dcc9266a11aa345e9b authored almost 2 years ago by Samuel Wein <[email protected]>
[fix] patched values for DeconvolutedSpectrum_test. THIS SHOULD BE CHECKED

github.com/OpenMS/OpenMS-1 - d01409335e996a6d61c419dcc9266a11aa345e9b authored almost 2 years ago by Samuel Wein <[email protected]>
[nop] removed phantom parameter and added move assignment iterator

github.com/OpenMS/OpenMS-1 - 5509750086166114d51e1319b5a74de8579af665 authored almost 2 years ago by Samuel Wein <[email protected]>
[nop] removed phantom parameter and added move assignment iterator

github.com/OpenMS/OpenMS - 5509750086166114d51e1319b5a74de8579af665 authored almost 2 years ago by Samuel Wein <[email protected]>
[nop] reorder imports

github.com/OpenMS/OpenMS - 643041c0838def71974408601aad7744dadc5255 authored almost 2 years ago by Samuel Wein <[email protected]>
[nop] reorder imports

github.com/OpenMS/OpenMS-1 - 643041c0838def71974408601aad7744dadc5255 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into refact_toppview

github.com/OpenMS/OpenMS-1 - 14f962759b71c578f8845c58daf4386790c56c84 authored almost 2 years ago by bielow <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into refact_toppview

github.com/OpenMS/OpenMS - 14f962759b71c578f8845c58daf4386790c56c84 authored almost 2 years ago by bielow <[email protected]>
Merge pull request #6395 from cbielow/feat

enable unused_variable warning as error on Windows

github.com/OpenMS/OpenMS - cb20f950bbd4f2d65e231f8124227899d87c25d7 authored almost 2 years ago by Chris Bielow <[email protected]>
Merge pull request #6395 from cbielow/feat

enable unused_variable warning as error on Windows

github.com/OpenMS/OpenMS-1 - cb20f950bbd4f2d65e231f8124227899d87c25d7 authored almost 2 years ago by Chris Bielow <[email protected]>
[nop] cleanup

github.com/OpenMS/OpenMS-1 - a2e1fb16612e3603ca92fd80b38fd007738bbeb6 authored almost 2 years ago by Samuel Wein <[email protected]>
[nop] cleanup

github.com/OpenMS/OpenMS - a2e1fb16612e3603ca92fd80b38fd007738bbeb6 authored almost 2 years ago by Samuel Wein <[email protected]>
Update EnzymaticDigestion.cpp

github.com/OpenMS/OpenMS - 4ca4baba46ce30875a5f7bece3a2e83d987c4415 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update EnzymaticDigestion.cpp

github.com/OpenMS/OpenMS-1 - 4ca4baba46ce30875a5f7bece3a2e83d987c4415 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
[nop] restore more comments

github.com/OpenMS/OpenMS-1 - 2cae27226dcf3c9b87c75096567b73c28d7846ba authored almost 2 years ago by Samuel Wein <[email protected]>
[nop] restore more comments

github.com/OpenMS/OpenMS - 2cae27226dcf3c9b87c75096567b73c28d7846ba authored almost 2 years ago by Samuel Wein <[email protected]>
Merge branch 'feature/FLASHDeconvOnly' of https://github.com/JeeH-K/OpenMS into JeeH/feature/FLASHDeconvOnly

github.com/OpenMS/OpenMS - 849eaf71a96cbb5bae114643066d16924c655b4a authored almost 2 years ago by Samuel Wein <[email protected]>
Merge branch 'feature/FLASHDeconvOnly' of https://github.com/JeeH-K/OpenMS into JeeH/feature/FLASHDeconvOnly

github.com/OpenMS/OpenMS-1 - 849eaf71a96cbb5bae114643066d16924c655b4a authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #14 from axelwalter/patch-2

enable SIRIUS tests

github.com/OpenMS/build-scripts - 293a2ea0509a5b2a2c9a42bb175bb628adb94db5 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
[nop] revert some deleted comments,

github.com/OpenMS/OpenMS-1 - b5c455834c7e78693e245a7b030ed479a2901cc1 authored almost 2 years ago by Samuel Wein <[email protected]>
[nop] revert some deleted comments,

github.com/OpenMS/OpenMS - b5c455834c7e78693e245a7b030ed479a2901cc1 authored almost 2 years ago by Samuel Wein <[email protected]>