Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

OpenMS

Make mass spectrometry analysis accessible to anyone
Collective - Host: opensource - https://opencollective.com/openms - Website: https://openms.org - Code: https://github.com/openms

bump KNIME version

github.com/OpenMS/OpenMS-docs - ea322ab680c364c289597d1eecc9d81338b27275 authored 9 months ago by Samuel Wein <[email protected]>
Update executables.cmake (#7322)

github.com/OpenMS/OpenMS - 0df52d41e2ab20720fe6335d311d54b212e8be53 authored 9 months ago by Timo Sachsenberg <[email protected]>
fix warning

github.com/OpenMS/OpenMS - 3a1cd959d1462a536d7e69e107766bc9765e35ae authored 9 months ago by Chris Bielow <[email protected]>
update developer FAQ

github.com/OpenMS/OpenMS - efe231105f482c8cbd955bb388c5d063cfd80d57 authored 9 months ago by Chris Bielow <[email protected]>
updated coding conventions to reflect C++17

github.com/OpenMS/OpenMS - 132dd1536a77c4d6ca9e856e8c24925d1a1a7713 authored 9 months ago by Chris Bielow <[email protected]>
Merge pull request #7320 from cbielow/more_doc

More flexible handling of doxygen warnings

github.com/OpenMS/OpenMS - 70c303bc46d5804ed470a46b71211a2a94955abc authored 9 months ago by Chris Bielow <[email protected]>
[DOC] fix groups

github.com/OpenMS/OpenMS - f2a877c4c0b8ec4f589978b139705201019ed822 authored 9 months ago by Chris Bielow <[email protected]>
allow certain warnings in Doxygen_Warning_Checker;

reduce graphs back to 50 nodes max in DOT

github.com/OpenMS/OpenMS - 526c10184b5c7966bbbf78234200738d2150cad6 authored 9 months ago by Chris Bielow <[email protected]>
docker: install specific cmake version from github release

github.com/OpenMS/contrib - 987e365823fcf3470f7d71687df89b9e984303b8 authored 9 months ago by Radu Suciu <[email protected]>
trim build dependencies in docker container

github.com/OpenMS/contrib - 9349a5626c369c0dec273f781eaefb39f1fda842 authored 9 months ago by Radu Suciu <[email protected]>
Merge pull request #7315 from OpenMS/dependabot/submodules/src/pyOpenMS/pyopenms-docs-6a0aab2

Bump src/pyOpenMS/pyopenms-docs from `229a171` to `6a0aab2`

github.com/OpenMS/OpenMS - a093a955f04e7c29a325b898a1cf08049d280b83 authored 9 months ago by Samuel Wein <[email protected]>
Merge branch 'develop' into dependabot/submodules/src/pyOpenMS/pyopenms-docs-6a0aab2

github.com/OpenMS/OpenMS - 287a2bae557a3a6aac8e81ca34df2af0d9c502c6 authored 9 months ago by Samuel Wein <[email protected]>
Merge pull request #7317 from OpenMS/update-actions-for-node-20

Update GitHub Actions to Latest Versions in CI Workflow

github.com/OpenMS/OpenMS - 4872b33fcc43f96e8f469a312459f86637bcab80 authored 9 months ago by Samuel Wein <[email protected]>
Bump versions of actions that use Node-16

github.com/OpenMS/OpenMS - 961d188dc0b011cd0c3f3140eba688ad390a04c4 authored 9 months ago by Samuel Wein <[email protected]>
Merge branch 'develop' into release/2.9.1-action

github.com/OpenMS/OpenMS - 99809aa3b46edd18f8fd34db7aba280aff32ee3f authored 9 months ago by Samuel Wein <[email protected]>
Update update_nightly.yml

github.com/OpenMS/OpenMS - 359580928ce62c70ec5fcdb4bdbe036a427cfb3d authored 9 months ago by Samuel Wein <[email protected]>
finish parameter section

github.com/OpenMS/streamlit-template - 2937bbdb96ab14f10478d557ffd57edf98b387ab authored 9 months ago by axelwalter <[email protected]>
Merge pull request #24 from eseiler/patch-11

Update seqan_versions.txt

github.com/OpenMS/usage_plots - 64939bcd965b0f938c956cb79b7ed0d7ccd49c94 authored 9 months ago by Svenja Mehringer <[email protected]>
Update seqan_versions.txt

github.com/OpenMS/usage_plots - 370aa1392a1dd4f6ae839e6437ac9ffe3e544132 authored 9 months ago by Enrico Seiler <[email protected]>
Merge pull request #7313 from cbielow/fix_ddocs

Enhancements in Documentation and Code Readability

github.com/OpenMS/OpenMS - 97a6e847cd73728955d8468285a86fabe66571ac authored 9 months ago by Chris Bielow <[email protected]>
Update src/topp/PeptideIndexer.cpp

github.com/OpenMS/OpenMS - 8b9ba18b1ae5996dd2375b42e8d4b49ece66f16a authored 9 months ago by Timo Sachsenberg <[email protected]>
workflows with parallel processes and continous log

github.com/OpenMS/streamlit-template - 6b30c126018085ea184addf66e04c53c975a95c8 authored 9 months ago by axelwalter <[email protected]>
Bump src/pyOpenMS/pyopenms-docs from `229a171` to `6a0aab2`

Bumps [src/pyOpenMS/pyopenms-docs](https://github.com/OpenMS/pyopenms-docs) from `229a171` to `6...

github.com/OpenMS/OpenMS - bcb3ff2ffe9efc43c5149af68e2cd3a0bf0f3fa9 authored 9 months ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Merge pull request #429 from OpenMS/dependabot/pip/docs/readthedocs-sphinx-search-0.3.2

Bump readthedocs-sphinx-search from 0.3.1 to 0.3.2 in /docs

github.com/OpenMS/pyopenms-docs - 6a0aab29763f4ca9cb90625b2671857595342114 authored 9 months ago by Samuel Wein <[email protected]>
Merge branch 'develop' into fix_devdocs

github.com/OpenMS/OpenMS - f520fba00cbe42da7d30944102132be4cd189ef5 authored 9 months ago by Chris Bielow <[email protected]>
add package to output

github.com/OpenMS/OpenMS - 7ac16cf88bfcb5779fec7fbb818acb28994d8d4a authored 9 months ago by Chris Bielow <[email protected]>
add package type, so it does not get lost when re-writing the CmakeCache.txt in https://github.com/OpenMS/OpenMS/blob/develop/tools/ci/cibuild.cmake#L139

github.com/OpenMS/OpenMS - 76d03617cced6ebf078e2db1a6933f480d6e112f authored 9 months ago by Chris Bielow <[email protected]>
Merge branch 'master' into dependabot/pip/docs/readthedocs-sphinx-search-0.3.2

github.com/OpenMS/pyopenms-docs - 1a4a84a337f4db62a8bd13a4c6467091ceb5d4cd authored 9 months ago by Samuel Wein <[email protected]>
debug

github.com/OpenMS/OpenMS - cc070bafab6e8c5c0b541d1f8866b74803c6bcb5 authored 9 months ago by Chris Bielow <[email protected]>
better error message for missing NSIS

github.com/OpenMS/OpenMS - bdc35894cffa21c1e594cff4316491ff3624f064 authored 9 months ago by Chris Bielow <[email protected]>
Bump src/pyOpenMS/pyopenms-docs from `64016e7` to `229a171` (#7311)

Bumps [src/pyOpenMS/pyopenms-docs](https://github.com/OpenMS/pyopenms-docs) from `64016e7` to `2...

github.com/OpenMS/OpenMS - 9c12a4e9700544c788777164b239a17df454a5c6 authored 9 months ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
turns out checking out the repo IS necessary

github.com/OpenMS/contrib - abcea4922cbe0cd397c0e0c72b2797faf4c55f8c authored 9 months ago by Radu Suciu <[email protected]>
fix spelling mistake

github.com/OpenMS/contrib - ce722ad16216f9883826b47ead5c21efa4871fa7 authored 9 months ago by Radu Suciu <[email protected]>
add buildx setup action

github.com/OpenMS/contrib - 0bd99c2bb6ec17e9605bbd7d18e6edaf5edf0a9a authored 9 months ago by Radu Suciu <[email protected]>
add dockerignore

just ignoring workflows for now. Ignoring .git might be a good idea but I think some users of th...

github.com/OpenMS/contrib - 7524587209aa5a41123023d8aecfd0ee3bb01824 authored 9 months ago by Radu Suciu <[email protected]>
pass in version as build arg so we can label the image

github.com/OpenMS/contrib - 4b656dc472ef1218e5dd62d65066b67a913c87aa authored 9 months ago by Radu Suciu <[email protected]>
remove unused build args

github.com/OpenMS/contrib - ececde580ae0b28d0cfd748c20d33656d5997dec authored 9 months ago by Radu Suciu <[email protected]>
cache docker build via GHA

github.com/OpenMS/contrib - c5b93b3efbe9619527fe97544a96b93e41da2e4e authored 9 months ago by Radu Suciu <[email protected]>
remove unnecessary checkout step

the docker-push-action should handle this for us

github.com/OpenMS/contrib - 31b6c0598f9fc03219c58e0f5b04bc301a3c9a11 authored 9 months ago by Radu Suciu <[email protected]>
update action versions

github.com/OpenMS/contrib - 273d4c320ac2ad8adacf329d773af3e59d200334 authored 9 months ago by Radu Suciu <[email protected]>
set build dir using argument

for consistency with Dockerfile in main repo PR

github.com/OpenMS/contrib - bf4ff49e37dc042519fc2772e22fae348a70164d authored 9 months ago by Radu Suciu <[email protected]>
Update update_nightly.yml

Update fetch-depth to fetch all changes.

github.com/OpenMS/OpenMS - 80a4e524defe9e44a9cb3390c6363332afd9a99a authored 9 months ago by Samuel Wein <[email protected]>
Update plotting tutorials (#427)

* updated plotting tutorials

* updated plotting tutorials

* increased plot resolution

*...

github.com/OpenMS/pyopenms-docs - 229a171523406f1895e3fac8573030fccd7e87ea authored 9 months ago by Matteo Pilz <[email protected]>
Merge branch 'develop' into fix_devdocs

github.com/OpenMS/OpenMS - 0328f9b23e3ec5c02d9f209447eb292130bf539a authored 9 months ago by Chris Bielow <[email protected]>
Create devmeeting2024.md (#126)

* Create devmeeting2024.md

news item for the 2024 OpenMS developer's conference

* Update c...

github.com/OpenMS/OpenMS-website - bc13ab37adec300bc25db4bf6b28a8c0ecbffb74 authored 9 months ago by Tjeerd Dijkstra <[email protected]>
removed application backup file because it triggered errors (#127)

github.com/OpenMS/OpenMS-website - 18591658f27bee713d015ed9d0b5aadc576f1023 authored 9 months ago by Timo Sachsenberg <[email protected]>
fix some more

github.com/OpenMS/OpenMS - cee266367d320ce3be036cd26413daedaedd65c2 authored 9 months ago by Chris Bielow <[email protected]>
Update update_nightly.yml (#7307)

* Update update_nightly.yml

Fix version number for action

* Update update_nightly.yml

r...

github.com/OpenMS/OpenMS - d9c17f85b8afc13fffec557f3b90b1d7f5298c56 authored 9 months ago by Samuel Wein <[email protected]>
Add action to replace Jenkins at updating the nightly branch every night (#7306)

github.com/OpenMS/OpenMS - cd5183f295bd97ae5e7b8198c9b2adc3b2da03b3 authored 9 months ago by Samuel Wein <[email protected]>
disable doc dependency -- CI seems to choke on it

github.com/OpenMS/OpenMS - 3dc886db036000d4e23c2103e1715f7bd4a23112 authored 9 months ago by Chris Bielow <[email protected]>
try to attach the doxygen-error.log to CDash

github.com/OpenMS/OpenMS - e38abd96fec71718c4769e42b819176ce28aefec authored 9 months ago by Chris Bielow <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into fix_devdocs

# Conflicts:
# doc/doxygen/parameters/DefaultParamHandlerDocumenter.cpp

github.com/OpenMS/OpenMS - cbe8a107ce8906a9f1919f4cb3afb4994386623f authored 9 months ago by Chris Bielow <[email protected]>
add DOXYGEN_VERSION to know which version was used in CI (may explain why it differs from local results)

github.com/OpenMS/OpenMS - 768f06e1b371b0ceb5b1c63ef692f0b638532ea8 authored 9 months ago by Chris Bielow <[email protected]>
fix more warnings only known to certain doxygen versions

github.com/OpenMS/OpenMS - 537688ece6cd44cc0a336d638f2a1f56f5a0310f authored 9 months ago by Chris Bielow <[email protected]>
Merge pull request #7305 from OpenMS/fix_DefaultParamHandlerDocumenter

fix compiler issue

github.com/OpenMS/OpenMS - d44f5d19425e219366bbbd084911aab241f6baa9 authored 9 months ago by Samuel Wein <[email protected]>
Merge branch 'develop' into fix_DefaultParamHandlerDocumenter

github.com/OpenMS/OpenMS - 376c8f5c86b432629e9dbbe7e9578ac08db0b5d0 authored 9 months ago by Samuel Wein <[email protected]>
fix compiler issue

github.com/OpenMS/OpenMS - f9207426905f46d41ffbdfdb99d446b92598bfe7 authored 9 months ago by Samuel Wein <[email protected]>
fix compiler issue with taking the address of RValue

github.com/OpenMS/OpenMS - ce88b09cd0ffd768d2341c6cefa89fb84517ab5b authored 9 months ago by Samuel Wein <[email protected]>
avoid doxygen warnings on the console

github.com/OpenMS/OpenMS - 42d32de8a0624dbcfca632475e3200a56861814f authored 9 months ago by Chris Bielow <[email protected]>
update dependencies

github.com/OpenMS/OpenMS - ea210dcf639a77e00b99c34f4ff2c2602d8e53cb authored 9 months ago by Chris Bielow <[email protected]>
fix more warnings

github.com/OpenMS/OpenMS - a678c5ade402a0a0e8ad00c81eadbc11a900bd23 authored 9 months ago by Chris Bielow <[email protected]>
Merge branch 'develop' into fix_devdocs

github.com/OpenMS/OpenMS - fe0f13f28739f0722064853f9bfe723445b98d75 authored 9 months ago by Chris Bielow <[email protected]>
better readability of output

github.com/OpenMS/OpenMS - ced905f741cd853110ef8216eb977501550baad5 authored 9 months ago by Chris Bielow <[email protected]>
fix more doxzgen warnings

github.com/OpenMS/OpenMS - 1018a02e677334dc9b39719f4beebfd76b7e8fd2 authored 9 months ago by Chris Bielow <[email protected]>
[NOOP] reorder

github.com/OpenMS/OpenMS - 9cccf23ad193a866d6144fbc07c01d1618b7c173 authored 9 months ago by Chris Bielow <[email protected]>
increase max nodes. if this is too much, we need to filter warnings like 'Included by graph for 'PeptideIdentification.h' not generated, too many nodes (68), threshold is 50. Consider increasing DOT_GRAPH_MAX_NODES.' in our Doxygen_warning_checker.cpp

github.com/OpenMS/OpenMS - f9c78817a1b764eceadaa0f3067a2e2f0dad8c03 authored 9 months ago by Chris Bielow <[email protected]>
remove class (oversight from last cleanup), yet doxygen generates warnings for it

github.com/OpenMS/OpenMS - 618f581fe7a1898fc59efb5c7f44fe903a3195bc authored 9 months ago by Chris Bielow <[email protected]>
Update codium-pr-agent.yml

github.com/OpenMS/OpenMS - 090909d71f9f017b822e8dd5e8d0d0d3e06a8d56 authored 9 months ago by Timo Sachsenberg <[email protected]>
move pr ai reviewer to workflows

github.com/OpenMS/OpenMS - 8a6d4edb5bf9497a42ae8677cff6a761ec6741ae authored 9 months ago by Timo Sachsenberg <[email protected]>
Rename codium-pr-agent to codium-pr-agent.yml

github.com/OpenMS/OpenMS - 8dc398bf7940efc8d185e3de5178c606bc4ecfe8 authored 9 months ago by Timo Sachsenberg <[email protected]>
Create codium-pr-agent (#7304)

github.com/OpenMS/OpenMS - 418a0fe93babe080227783872fb140463355c83b authored 9 months ago by Timo Sachsenberg <[email protected]>
add a test which checks for doxygen warnings

github.com/OpenMS/OpenMS - 9ff2a0362a0ae2354ed6f435257048948a09d06d authored 9 months ago by Chris Bielow <[email protected]>
fix doxygen warnings

github.com/OpenMS/OpenMS - 37f261148cb2fa9568823c05cabc19e278c93597 authored 9 months ago by Chris Bielow <[email protected]>
Bump readthedocs-sphinx-search from 0.3.1 to 0.3.2 in /docs

Bumps [readthedocs-sphinx-search](https://github.com/readthedocs/readthedocs-sphinx-search) from...

github.com/OpenMS/pyopenms-docs - e7cb45ba0207442ed9922c48970d444e73e08058 authored 9 months ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Merge branch 'fix_devdocs' of https://github.com/cbielow/OpenMS into fix_devdocs

github.com/OpenMS/OpenMS - 90e48a4e7494b58d624f2889bc1ec88daf4cdf18 authored 9 months ago by Chris Bielow <[email protected]>
try enabling doxygen on GHA-Ubuntu per default (not only for packaging)

github.com/OpenMS/OpenMS - 6bb2ad65894d38fcd25cc8bb8d35d740426ebd3c authored 9 months ago by Chris Bielow <[email protected]>
proper block display

github.com/OpenMS/OpenMS - 41bfb7f09c97d65aa85caf8b12e7e86ea1a280b4 authored 9 months ago by Chris Bielow <[email protected]>
Merge branch 'develop' into fix_devdocs

github.com/OpenMS/OpenMS - 30d839b5589ca10adf0600f27294b40d6faaf001 authored 9 months ago by Chris Bielow <[email protected]>
fix compile errors

github.com/OpenMS/OpenMS - 3a8373f3103ea11cebc44d14534d7d74e6f6c44e authored 9 months ago by Chris Bielow <[email protected]>
fix oversight

github.com/OpenMS/OpenMS - 499854080a0e4303adf024a3038aecc621acc59b authored 9 months ago by Chris Bielow <[email protected]>
Merge pull request #7301 from OpenMS/poshul-patch-1

Update README

github.com/OpenMS/OpenMS - 04646126b6c1aa11e83b4a9c3c9745ea99939aaf authored 9 months ago by Timo Sachsenberg <[email protected]>
Update README

Remove old ref to svn

github.com/OpenMS/OpenMS - dd23a811af786dd89911e693823985c718d86d5c authored 9 months ago by Samuel Wein <[email protected]>
clone all submodules via https

github.com/OpenMS/streamlit-deployment - 5e77397bd47875d064cb104bb3bd74def4fd0835 authored 9 months ago by axelwalter <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into fix_devdocs

# Conflicts:
# src/topp/PeakPickerHiRes.cpp
# src/topp/PeptideIndexer.cpp
# src/topp/ProteinQuan...

github.com/OpenMS/OpenMS - 4e787d78af306004abd6f66a1f212553804f9d75 authored 9 months ago by Chris Bielow <[email protected]>
enable WARN_AS_ERROR in doxygen

github.com/OpenMS/OpenMS - 25c6a13188f7c0519294aaa438827f326bedf2bb authored 9 months ago by Chris Bielow <[email protected]>
leave one error in

github.com/OpenMS/OpenMS - e8d0b01d352e3354368a27320f6b768bf8bc46c4 authored 9 months ago by Chris Bielow <[email protected]>
fix remaining doxygen warnings

github.com/OpenMS/OpenMS - a779f32c9eb2f12a2877a8c29efef0d2488a71dd authored 9 months ago by Chris Bielow <[email protected]>
Add FLASHViewer submodule and service (#19)

Co-authored-by: Andrew Almaguer <[email protected]>

github.com/OpenMS/streamlit-deployment - 14e259f43aa2482fdded9819ae81f33046725bd0 authored 9 months ago by Jihyung Kim <[email protected]>
Spectramerger sprint (#426)

* Spectra Merging part has been added. How to list parameters is added in Parameter Handling sec...

github.com/OpenMS/pyopenms-docs - 27dfc2ad071fd16d27d57bbc631efda90b5e6b69 authored 9 months ago by KyowonJeong <[email protected]>
install dependencies in one step and copy code in as last step

github.com/OpenMS/contrib - 798c0702a7449c346d0c64aa19b5f1c1549cf58c authored 9 months ago by Radu Suciu <[email protected]>
install eigen and coinor from apt instead of building from source

github.com/OpenMS/contrib - 1df325b146184b272d962bcb12166173ab8fd8ab authored 9 months ago by Radu Suciu <[email protected]>
docs and better/faster implementation

github.com/OpenMS/OpenMS - 9d9f6c585ccb879839bfe9f6ca77b238f0e52f16 authored 9 months ago by Chris Bielow <[email protected]>
remove useless critical section

github.com/OpenMS/OpenMS - e1536e4ce25abee3c4be831e07df5c7b44b7afd6 authored 9 months ago by Chris Bielow <[email protected]>
Bump tj-actions/changed-files from 35 to 41 in /.github/workflows (#428)

Bumps [tj-actions/changed-files](https://github.com/tj-actions/changed-files) from 35 to 41.
- ...

github.com/OpenMS/pyopenms-docs - e40c469dbd7114193fca70a883fb45be810d55ae authored 9 months ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
doygen warning fixes

github.com/OpenMS/OpenMS - 53b9b6b3eee6c21cc7e7042ab673be1f1da27536 authored 9 months ago by Chris Bielow <[email protected]>
prepare for markdown support in doxygen (indents are problematic)

github.com/OpenMS/OpenMS - 2da05f50fa77b6da9c3800e4f04b7450c8c2df42 authored 9 months ago by Chris Bielow <[email protected]>
a lot more doxygen fixes

github.com/OpenMS/OpenMS - 4eb9aa2d2d4e862a08da8458c647371f3b8a3d06 authored 9 months ago by Chris Bielow <[email protected]>
fix doxygen warnings

github.com/OpenMS/OpenMS - 1cd7dbe723840fbefa4d7f97d83e875fd005245b authored 9 months ago by Chris Bielow <[email protected]>
fix more doxygen warnings

github.com/OpenMS/OpenMS - df8f43c6503468a3597ae9a922c96f3fd1783372 authored 9 months ago by Chris Bielow <[email protected]>
a first brush over developer tutorial; readding conding conventions from Wiki

github.com/OpenMS/OpenMS - 2f6ea25d3e996c5ce79fd172cc7e3636bb15f3d2 authored 9 months ago by Chris Bielow <[email protected]>