Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

OpenMS

Make mass spectrometry analysis accessible to anyone
Collective - Host: opensource - https://opencollective.com/openms - Website: https://openms.org - Code: https://github.com/openms

simple file downloader (#6564)

* simple file downloader

* fix test filename

* throw exception if file missing

Co-autho...

github.com/OpenMS/OpenMS-1 - 924d180b256805cb42eabcc707951d0236912951 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
IDRipper: prevent unneeded copies (#6594)

* prevent unneeded copies

* update tests

github.com/OpenMS/OpenMS-1 - e197db75bd4908fb4697c89a17d2465b90518656 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
IDRipper: prevent unneeded copies (#6594)

* prevent unneeded copies

* update tests

github.com/OpenMS/OpenMS - e197db75bd4908fb4697c89a17d2465b90518656 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
fix win actions

github.com/OpenMS/OpenMS - 6d749f831b03c220c187599a116e43f9db8b78ad authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
fix win actions

github.com/OpenMS/OpenMS-1 - 6d749f831b03c220c187599a116e43f9db8b78ad authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Update my.js

github.com/OpenMS/pyopenms-docs - f8a75e700f94c7600b2c6b16cd317e02c085a1fa authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
update js libs

github.com/OpenMS/pyopenms-docs - bcd4c9f7d5fdb3558bc531aa3eb6e12485b87090 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
update threejs cdns

github.com/OpenMS/pyopenms-docs - 883337020a368cea2263f3175099d296f906e934 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Update postBuild

github.com/OpenMS/pyopenms-docs - fdbc432da00bbb19d384c9bc3ceb79f93497f44b authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
remove integrated submodules from api docs

github.com/OpenMS/pyopenms-docs - 0b067e255c38010489896c8184e5439ba531fc99 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
[Feature] GH actions ccache (#6112)

* [Feature/CI] try adding ccache to GH actions

* fix ccache actions

* fix ccache install?
...

github.com/OpenMS/OpenMS - 175dbecba2dbf95fd30a0ad08ad00d5be24ec0bd authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
[Feature] GH actions ccache (#6112)

* [Feature/CI] try adding ccache to GH actions

* fix ccache actions

* fix ccache install?
...

github.com/OpenMS/OpenMS-1 - 175dbecba2dbf95fd30a0ad08ad00d5be24ec0bd authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Update postBuild

github.com/OpenMS/pyopenms-docs - ab94f10894fdb9a2a9e61b2c350a95e7a8b1c7d9 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
update theme version

fixes #324

github.com/OpenMS/pyopenms-docs - 522cf77b0873f2b4d2703ef4121c2d5a7d5d264a authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Update doc/doxygen/parameters/DefaultParamHandlerDocumenter.cpp

github.com/OpenMS/OpenMS - 6b6e33fdc7de85114c547fcc0c9e5e121a78db26 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Update doc/doxygen/parameters/DefaultParamHandlerDocumenter.cpp

github.com/OpenMS/OpenMS-1 - 6b6e33fdc7de85114c547fcc0c9e5e121a78db26 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6589 from jpfeuffer/fix/nsis

fixes a lot of stuff in NSIS

github.com/OpenMS/OpenMS-1 - 519c03ff7fb51add183273c8a53c02d00754f247 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6589 from jpfeuffer/fix/nsis

fixes a lot of stuff in NSIS

github.com/OpenMS/OpenMS - 519c03ff7fb51add183273c8a53c02d00754f247 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6592 from cbielow/fix_logMode

TOPPView: Fix log mode

github.com/OpenMS/OpenMS - 30cf49b0efb48ed767a4c07a3021466454337b6d authored almost 2 years ago by Chris Bielow <[email protected]>
Merge pull request #6592 from cbielow/fix_logMode

TOPPView: Fix log mode

github.com/OpenMS/OpenMS-1 - 30cf49b0efb48ed767a4c07a3021466454337b6d authored almost 2 years ago by Chris Bielow <[email protected]>
Merge branch 'develop' into fix_logMode

github.com/OpenMS/OpenMS-1 - 1e10c1396a187b3045935be606c9803ac8669424 authored almost 2 years ago by Chris Bielow <[email protected]>
Merge branch 'develop' into fix_logMode

github.com/OpenMS/OpenMS - 1e10c1396a187b3045935be606c9803ac8669424 authored almost 2 years ago by Chris Bielow <[email protected]>
fixes #6585

github.com/OpenMS/OpenMS - 8c7991e338bb0f357543826cd31e7e71ba211b85 authored almost 2 years ago by Chris Bielow <[email protected]>
fixes #6585

github.com/OpenMS/OpenMS-1 - 8c7991e338bb0f357543826cd31e7e71ba211b85 authored almost 2 years ago by Chris Bielow <[email protected]>
Feature/id ripper speedup2 (#6590)

* massive speedup

* finished implementation

* also consider file description when mapping
...

github.com/OpenMS/OpenMS-1 - 001ede33f8b88a045e4c3aba4910d5030d30735f authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Feature/id ripper speedup2 (#6590)

* massive speedup

* finished implementation

* also consider file description when mapping
...

github.com/OpenMS/OpenMS - 001ede33f8b88a045e4c3aba4910d5030d30735f authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into fix/nsis

github.com/OpenMS/OpenMS - 767ffcf6d94b24ba857b527d71855332a2839864 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into fix/nsis

github.com/OpenMS/OpenMS-1 - 767ffcf6d94b24ba857b527d71855332a2839864 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
More fixes

github.com/OpenMS/OpenMS-1 - 749da092218c89d3e375e02497871346879a60ea authored almost 2 years ago by jpfeuffer <[email protected]>
More fixes

github.com/OpenMS/OpenMS - 749da092218c89d3e375e02497871346879a60ea authored almost 2 years ago by jpfeuffer <[email protected]>
update clang format lint action

github.com/OpenMS/OpenMS - b159abbb911443530611bb38d0eaa6e5a469098a authored almost 2 years ago by Timo Sachsenberg <[email protected]>
update clang format lint action

github.com/OpenMS/OpenMS-1 - b159abbb911443530611bb38d0eaa6e5a469098a authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update NSIS.template.in

github.com/OpenMS/OpenMS-1 - 8df481c86a0adc19d2740159a23e199b74f85a24 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Update NSIS.template.in

github.com/OpenMS/OpenMS - 8df481c86a0adc19d2740159a23e199b74f85a24 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
fixes a lot of stuff in NSIS. Todo cleanup and uninstaller not completely working.

github.com/OpenMS/OpenMS - 205e13865c69d52ef1fbcf95fc1adaa1819531fa authored almost 2 years ago by jpfeuffer <[email protected]>
fixes a lot of stuff in NSIS. Todo cleanup and uninstaller not completely working.

github.com/OpenMS/OpenMS-1 - 205e13865c69d52ef1fbcf95fc1adaa1819531fa authored almost 2 years ago by jpfeuffer <[email protected]>
IDRipper speedup (#6584)

github.com/OpenMS/OpenMS-1 - 8b18be6a320c192792661cfce4a48fb5b2c4c115 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
IDRipper speedup (#6584)

github.com/OpenMS/OpenMS - 8b18be6a320c192792661cfce4a48fb5b2c4c115 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6578 from jcharkow/updateTsvOutput

[FEATURE] add IM output to OpenSwath tsv file

github.com/OpenMS/OpenMS - 8e61ca3c096ee2517bed5419669efb0e814dfc7e authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6578 from jcharkow/updateTsvOutput

[FEATURE] add IM output to OpenSwath tsv file

github.com/OpenMS/OpenMS-1 - 8e61ca3c096ee2517bed5419669efb0e814dfc7e authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6548 from Telomelonia/patch-1

[DOC] Rename "The OpenMS Proteomics Pipeline" to "The OpenMS PiPeline"

github.com/OpenMS/OpenMS-1 - 438e21236d8b16d986b4a3f65858180f2fe7fca7 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6548 from Telomelonia/patch-1

[DOC] Rename "The OpenMS Proteomics Pipeline" to "The OpenMS PiPeline"

github.com/OpenMS/OpenMS - 438e21236d8b16d986b4a3f65858180f2fe7fca7 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6580 from OpenMS/timosachsenberg/idmapper-much-slower-6072

Timosachsenberg/idmapper-much-slower-6072

github.com/OpenMS/OpenMS - 5f5521ca427c540416815bce05f1858c0abdb553 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6580 from OpenMS/timosachsenberg/idmapper-much-slower-6072

Timosachsenberg/idmapper-much-slower-6072

github.com/OpenMS/OpenMS-1 - 5f5521ca427c540416815bce05f1858c0abdb553 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Update src/openms/source/ANALYSIS/ID/IDMapper.cpp

github.com/OpenMS/OpenMS-1 - 70aa120a220c5a5d633866148b1821d33dc1395c authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Update src/openms/source/ANALYSIS/ID/IDMapper.cpp

github.com/OpenMS/OpenMS - 70aa120a220c5a5d633866148b1821d33dc1395c authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
use basename for mapping

github.com/OpenMS/OpenMS - 7780b7cb3cd4d252d761641bbb38ca0e33304478 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
use basename for mapping

github.com/OpenMS/OpenMS-1 - 7780b7cb3cd4d252d761641bbb38ca0e33304478 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
use basename for filename mapping

github.com/OpenMS/OpenMS-1 - c9bbf3233b98f4274508c877aee8ef6d61f6c0f5 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
use basename for filename mapping

github.com/OpenMS/OpenMS - c9bbf3233b98f4274508c877aee8ef6d61f6c0f5 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
only enforce file names for TMT case

github.com/OpenMS/OpenMS - 666bda7385435ca28a0120849334ff77fac733b5 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
only enforce file names for TMT case

github.com/OpenMS/OpenMS-1 - 666bda7385435ca28a0120849334ff77fac733b5 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
update logic

github.com/OpenMS/OpenMS-1 - eafacd8bfad87c088cd48ece6d6f7881cb8ed613 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
update logic

github.com/OpenMS/OpenMS - eafacd8bfad87c088cd48ece6d6f7881cb8ed613 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
use ID_MERGE_INDEX constant

github.com/OpenMS/OpenMS - f257ecb092d6b6bbc23b648e2d5b79ab5a09d737 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
use ID_MERGE_INDEX constant

github.com/OpenMS/OpenMS-1 - f257ecb092d6b6bbc23b648e2d5b79ab5a09d737 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
faster mapping for TMT data

github.com/OpenMS/OpenMS-1 - 8dde17b0c7a8ac975425dbd7932456f7f31bdb90 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
faster mapping for TMT data

github.com/OpenMS/OpenMS - 8dde17b0c7a8ac975425dbd7932456f7f31bdb90 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
small fix to make slow meta value comparisons last

github.com/OpenMS/OpenMS - f0fb5fbe45826b22ba85ea21d64076c7cc6619f5 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
small fix to make slow meta value comparisons last

github.com/OpenMS/OpenMS-1 - f0fb5fbe45826b22ba85ea21d64076c7cc6619f5 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
[FEATURE] add IM output to OpenSwath tsv file

Recently in https://github.com/OpenMS/OpenMS/pull/6268 added extra
output to OpenSwath .osw file...

github.com/OpenMS/OpenMS-1 - 9c72e99e33a3f8a212b2a11cd906177b319f85b2 authored almost 2 years ago by jcharkow <[email protected]>
[FEATURE] add IM output to OpenSwath tsv file

Recently in https://github.com/OpenMS/OpenMS/pull/6268 added extra
output to OpenSwath .osw file...

github.com/OpenMS/OpenMS - 9c72e99e33a3f8a212b2a11cd906177b319f85b2 authored almost 2 years ago by jcharkow <[email protected]>
Merge pull request #6575 from OpenMS/feat/singularity

[Feature] direct singularity images on ghcr.io

github.com/OpenMS/OpenMS - e1d5db34907273658e9c8c585be3557cebb1ace7 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6575 from OpenMS/feat/singularity

[Feature] direct singularity images on ghcr.io

github.com/OpenMS/OpenMS-1 - e1d5db34907273658e9c8c585be3557cebb1ace7 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
different delimiter

github.com/OpenMS/OpenMS-1 - 1cf1359593c198159640b2ed625f4e4293b4e031 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
different delimiter

github.com/OpenMS/OpenMS - 1cf1359593c198159640b2ed625f4e4293b4e031 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
wrong file

github.com/OpenMS/OpenMS - 8eb2b58cd6241dd87b8eb34b13245ac5ad4d4fdc authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
wrong file

github.com/OpenMS/OpenMS-1 - 8eb2b58cd6241dd87b8eb34b13245ac5ad4d4fdc authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
use sed to "pass" branch/tag args like in docker

github.com/OpenMS/OpenMS-1 - f4938548097b550b30499fa1601cfdca7a95e3ab authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
use sed to "pass" branch/tag args like in docker

github.com/OpenMS/OpenMS - f4938548097b550b30499fa1601cfdca7a95e3ab authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
???? login between pushes

github.com/OpenMS/OpenMS - 923f00eb4ece205ff0efcb8987f5d9f96641dee0 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
???? login between pushes

github.com/OpenMS/OpenMS-1 - 923f00eb4ece205ff0efcb8987f5d9f96641dee0 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
yet another delimiter..........

github.com/OpenMS/OpenMS-1 - 59740f795f1a1f93e734bc88cad196907636cb59 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
yet another delimiter..........

github.com/OpenMS/OpenMS - 59740f795f1a1f93e734bc88cad196907636cb59 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Update .gitpod.yml

github.com/OpenMS/OpenMS - 4053fba52107b514b8327b4023e9f6991037c0c4 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Update .gitpod.yml

github.com/OpenMS/OpenMS-1 - 4053fba52107b514b8327b4023e9f6991037c0c4 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
use different delimiter

github.com/OpenMS/OpenMS-1 - 3f34e0b2feba3d3b30bbc756f543ccde40c28610 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
use different delimiter

github.com/OpenMS/OpenMS - 3f34e0b2feba3d3b30bbc756f543ccde40c28610 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6576 from OpenMS/jpfeuffer-patch-4

fix pthreads difference with sqlitecpp

github.com/OpenMS/OpenMS - b280f3779978ab60d49d97bf2a46b28dbe0d6047 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6576 from OpenMS/jpfeuffer-patch-4

fix pthreads difference with sqlitecpp

github.com/OpenMS/OpenMS-1 - b280f3779978ab60d49d97bf2a46b28dbe0d6047 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
use localimage

github.com/OpenMS/OpenMS-1 - 95c1daa77ec9aeb8b5bb6d011604f284101921ba authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
use localimage

github.com/OpenMS/OpenMS - 95c1daa77ec9aeb8b5bb6d011604f284101921ba authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
prepare for building tools image

some sed will be necessary to build from local container

github.com/OpenMS/OpenMS - 5f349b923a1e7e0c5cd2b4c294baea7791104e64 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
prepare for building tools image

some sed will be necessary to build from local container

github.com/OpenMS/OpenMS-1 - 5f349b923a1e7e0c5cd2b4c294baea7791104e64 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
fix pthreads difference with sqlitecpp

github.com/OpenMS/OpenMS-1 - 4735dd626f0fe12969df0b0e081bc1b082164162 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
fix pthreads difference with sqlitecpp

github.com/OpenMS/OpenMS - 4735dd626f0fe12969df0b0e081bc1b082164162 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Fix doc warnings (#6573)

* avoid wrong use of @class

* Doxygen's autolink does not use namespaces. Just Class::Functio...

github.com/OpenMS/OpenMS - 84ae75526d9af20511b04f6f00a51b459e485c95 authored almost 2 years ago by Chris Bielow <[email protected]>
Fix doc warnings (#6573)

* avoid wrong use of @class

* Doxygen's autolink does not use namespaces. Just Class::Functio...

github.com/OpenMS/OpenMS-1 - 84ae75526d9af20511b04f6f00a51b459e485c95 authored almost 2 years ago by Chris Bielow <[email protected]>
do not build automatically on gitpod to be able to debug

github.com/OpenMS/OpenMS-1 - 871a608831d654223ab12a348515682c77b39031 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
do not build automatically on gitpod to be able to debug

github.com/OpenMS/OpenMS - 871a608831d654223ab12a348515682c77b39031 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
always use bash

github.com/OpenMS/OpenMS - 865a9685a5ae8ebf3c3e83cf246fc6c00f5546aa authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
always use bash

github.com/OpenMS/OpenMS-1 - 865a9685a5ae8ebf3c3e83cf246fc6c00f5546aa authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
.......

github.com/OpenMS/OpenMS-1 - 771d7e695e7179d75f51d24239671ce248f29d10 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
.......

github.com/OpenMS/OpenMS - 771d7e695e7179d75f51d24239671ce248f29d10 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
fix dependency excludes

github.com/OpenMS/OpenMS - 05d6bc83a3967d3c2f42b094eb4bca05fc40d0f8 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
fix dependency excludes

github.com/OpenMS/OpenMS-1 - 05d6bc83a3967d3c2f42b094eb4bca05fc40d0f8 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
wrong syntax

github.com/OpenMS/OpenMS-1 - 54c036cff5c5a74d88b04b579358fb501c94cdef authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
wrong syntax

github.com/OpenMS/OpenMS - 54c036cff5c5a74d88b04b579358fb501c94cdef authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
remove useless stuff from sqlitecpp

github.com/OpenMS/OpenMS - fec20baec2c71a1ca5bcd763f26b2b0f904aa9f4 authored almost 2 years ago by jpfeuffer <[email protected]>
remove useless stuff from sqlitecpp

github.com/OpenMS/OpenMS-1 - fec20baec2c71a1ca5bcd763f26b2b0f904aa9f4 authored almost 2 years ago by jpfeuffer <[email protected]>