Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

OpenMS

Make mass spectrometry analysis accessible to anyone
Collective - Host: opensource - https://opencollective.com/openms - Website: https://openms.org - Code: https://github.com/openms

added module docstring

github.com/OpenMS/OpenMS-1 - e75d8e1075bc895d875b72efc783cca8f878a997 authored over 1 year ago by matteopilz <[email protected]>
Merge branch 'OpenMS:main' into main

github.com/OpenMS/OpenMS-website - c1fae810414692c36c2b90ab2b67858bc8dbe357 authored over 1 year ago by Matteo Pilz <[email protected]>
Merge branch 'OpenMS:develop' into develop

github.com/OpenMS/OpenMS-1 - 3e1dcf73a593e765166214b1ee23a09c4b9a1676 authored over 1 year ago by Matteo Pilz <[email protected]>
Merge branch 'OpenMS:develop' into develop

github.com/OpenMS/OpenMS - 3e1dcf73a593e765166214b1ee23a09c4b9a1676 authored over 1 year ago by Matteo Pilz <[email protected]>
[pyOpenMS] simple helper to update scores from a previously exported dataframe (#6613)

* pyopenms update scores from dataframe e.g. for ML

* update tests

* fix tests

* Update...

github.com/OpenMS/OpenMS - 1f3aeb409997b009936e75e49683a8e0c5dfb1bc authored over 1 year ago by Timo Sachsenberg <[email protected]>
[pyOpenMS] simple helper to update scores from a previously exported dataframe (#6613)

* pyopenms update scores from dataframe e.g. for ML

* update tests

* fix tests

* Update...

github.com/OpenMS/OpenMS-1 - 1f3aeb409997b009936e75e49683a8e0c5dfb1bc authored over 1 year ago by Timo Sachsenberg <[email protected]>
fixes #6614

github.com/OpenMS/OpenMS-1 - 23bfae5b70ff389a4281f8132deb1b83de7214d4 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
fixes #6614

github.com/OpenMS/OpenMS - 23bfae5b70ff389a4281f8132deb1b83de7214d4 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into develop

github.com/OpenMS/OpenMS - e2000939d6a71c15e66feeb678ceb0cc6ef7e08c authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into develop

github.com/OpenMS/OpenMS-1 - e2000939d6a71c15e66feeb678ceb0cc6ef7e08c authored over 1 year ago by Timo Sachsenberg <[email protected]>
disable some scores not used for MS1 transitions; set max iterations … (#6608)

* disable some scores not used for MS1 transitions; set max iterations for faster EMG fits

* ...

github.com/OpenMS/OpenMS-1 - f57a12e1103af6a94b4999e797a5306c1da55940 authored over 1 year ago by Timo Sachsenberg <[email protected]>
disable some scores not used for MS1 transitions; set max iterations … (#6608)

* disable some scores not used for MS1 transitions; set max iterations for faster EMG fits

* ...

github.com/OpenMS/OpenMS - f57a12e1103af6a94b4999e797a5306c1da55940 authored over 1 year ago by Timo Sachsenberg <[email protected]>
[FEATURE] Add a filter class that can filter FeatureMaps on overlaps

github.com/OpenMS/OpenMS - ddfdebfeb3feb298f492f294481e0da84166c53d authored over 1 year ago by jpfeuffer <[email protected]>
[FEATURE] Add a filter class that can filter FeatureMaps on overlaps

github.com/OpenMS/OpenMS-1 - ddfdebfeb3feb298f492f294481e0da84166c53d authored over 1 year ago by jpfeuffer <[email protected]>
Merge pull request #325 from matteopilz/master

Updated plotting tutorials and images

github.com/OpenMS/pyopenms-docs - 232c1e253cdf41f597c1be1fdd234060fad33237 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into fix/revertTransformWrapping

github.com/OpenMS/OpenMS-1 - 13d13a5bddb8ed131d43b9c9229b4ae2bab934f1 authored over 1 year ago by Samuel Wein <[email protected]>
Merge branch 'develop' into fix/revertTransformWrapping

github.com/OpenMS/OpenMS - 13d13a5bddb8ed131d43b9c9229b4ae2bab934f1 authored over 1 year ago by Samuel Wein <[email protected]>
added cross-references

github.com/OpenMS/pyopenms-docs - 0d19d2caa29493b05d030c8f7a0c89513a90cca4 authored over 1 year ago by matteopilz <[email protected]>
Merge remote-tracking branch 'origin/master'

github.com/OpenMS/pyopenms-docs - fd793f4a8783cacc6d933edd4b67aa62d4de0528 authored over 1 year ago by matteopilz <[email protected]>
added print outputs

github.com/OpenMS/pyopenms-docs - c5faa0d0aacef960e4deabae79f83a663e4d9e09 authored over 1 year ago by matteopilz <[email protected]>
Merge pull request #124 from OpenMS/poshul-patch-1

Remove set-output from actions

github.com/OpenMS/contrib - 8a2bd3af2268057ed870476c7fabb9611b13f057 authored almost 2 years ago by Samuel Wein <[email protected]>
Update deploy-manylinux-docker.yml

github.com/OpenMS/contrib - c356fc193f50e53284d0a9485bb915c394074575 authored almost 2 years ago by Samuel Wein <[email protected]>
Update deploydocker.yml

github.com/OpenMS/contrib - 8d0fe961a82dc5060db2c417af2df855af8b3828 authored almost 2 years ago by Samuel Wein <[email protected]>
Update deploydocker.yml

github.com/OpenMS/contrib - 96fac7c811a573c4132db1cda437f84264ad38bb authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #178 from OpenMS/jpfeuffer-patch-1

fixes #177

github.com/OpenMS/autowrap - 39fc41859b2519afaf0651ab69fb576fa0ceda48 authored almost 2 years ago by Samuel Wein <[email protected]>
Publishing Site OpenMS/openms.de at 2f40876c5e7ee432ef1f36cc956e2c4424d46b8f on Thu Jan 19 18:02:47 UTC 2023

github.com/OpenMS/openms.github.io - 3a8e4b900c907bc669e906905a7900b70e9e70d5 authored almost 2 years ago by timosachsenberg <[email protected]>
Merge pull request #68 from tjeerdijk/patch-1

Update news.md

github.com/OpenMS/OpenMS-website - 2f40876c5e7ee432ef1f36cc956e2c4424d46b8f authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'master' into master

github.com/OpenMS/pyopenms-docs - 9f38f28b7cb98c5a9c590ecce44fc0aa253aefb9 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Update news.md

Added news items on new OPenMS manual, new OPenMS web site and 2023 developers meeting. correcte...

github.com/OpenMS/OpenMS-website - 9d30465ce6bbed1df47060a9b6ec62931ba776bf authored almost 2 years ago by Tjeerd Dijkstra <[email protected]>
Update .gitpod.yml

github.com/OpenMS/pyopenms-docs - 565bb139d49906f199a5715ef7a1fe4836a690e4 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Update .gitpod.yml

github.com/OpenMS/pyopenms-docs - e94456593c903b475d3c96af8c4b91f5d3a5aca3 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
use nightly pypi

github.com/OpenMS/pyopenms-docs - 6a6ba16c5f7515148dac36a8454392b716bfea00 authored almost 2 years ago by jpfeuffer <[email protected]>
use nightly pypi

github.com/OpenMS/pyopenms-docs - a2cf44fcba7857caafb92b3dd402742cff194f9a authored almost 2 years ago by jpfeuffer <[email protected]>
completely wrong gitpod init

github.com/OpenMS/pyopenms-docs - 608bdc6da041a111baa04068e876657fe0fd8dde authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Publishing Site OpenMS/openms.de at b2d3858ee2c23b760d272ce55b3f277c4c437671 on Thu Jan 19 13:28:17 UTC 2023

github.com/OpenMS/openms.github.io - 1f2ab01e024139c06cf90556c628f4aa8f959a7a authored almost 2 years ago by poshul <[email protected]>
typo

github.com/OpenMS/autowrap - 417a1f46a85170975e78c0ce0ba12b583cabf3d1 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
updated plotting tutorials and images

github.com/OpenMS/pyopenms-docs - f59eec9da470288200a5aaa05c66e71f31f20e94 authored almost 2 years ago by matteopilz <[email protected]>
Update gh-pages.yml

bump setup-python version

github.com/OpenMS/OpenMS-website - b2d3858ee2c23b760d272ce55b3f277c4c437671 authored almost 2 years ago by Samuel Wein <[email protected]>
fixes #177

github.com/OpenMS/autowrap - ceb5876992b096a7f5b3a42daba655ef699689ad authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
updated plotting tutorials and images

github.com/OpenMS/pyopenms-docs - 9c8a8cf6b1f932cc5b26ea3d95d7a59fc4e02b99 authored almost 2 years ago by matteopilz <[email protected]>
Merge remote-tracking branch 'origin/master'

github.com/OpenMS/pyopenms-docs - c29a79fa8653afee39e6efb5e1e7e94a2e4b6cb9 authored almost 2 years ago by matteopilz <[email protected]>
moved to usage_plots repo

github.com/OpenMS/dockerfiles - 03e18cc107dc0aeceb67899b03e5898f16bd01db authored almost 2 years ago by Timo Sachsenberg <[email protected]>
moved to usage_plots repository

github.com/OpenMS/dockerfiles - 436b581adc2925630b7d89144e035c0435a04fae authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update Dockerfile

github.com/OpenMS/usage_plots - fdb64c6ff316a840f26dc57eb7994981fa65ccdd authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update README.md

github.com/OpenMS/usage_plots - 785fc4c3ad73e7c6a090fc8ad46b755fecfb18c2 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
disable update check on gh actions

github.com/OpenMS/OpenMS - f60393791f05f4e9dc6d8bc1035aa9a7882ff873 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
disable update check on gh actions

github.com/OpenMS/OpenMS-1 - f60393791f05f4e9dc6d8bc1035aa9a7882ff873 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'OpenMS:master' into master

github.com/OpenMS/pyopenms-docs - 8d60f807eaaccfc3092c0006409e74647e047c80 authored almost 2 years ago by Matteo Pilz <[email protected]>
updated plotting tutorials and images

github.com/OpenMS/pyopenms-docs - 621f3ca8f457862feb1cab05f94d43738ab67008 authored almost 2 years ago by matteopilz <[email protected]>
updated plotting tutorials and images

github.com/OpenMS/pyopenms-docs - a438bba49b1ee4adf0a11ca2b7febfd99a96d1f3 authored almost 2 years ago by matteopilz <[email protected]>
Merge pull request #319 from greengypsy/new_background

New background

github.com/OpenMS/pyopenms-docs - d0f464a9e299afa527a23ab99b2aa88506131eda authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge remote-tracking branch 'origin/master'

# Conflicts:
# requirements.txt

github.com/OpenMS/pyopenms-docs - a3643ead6e80e3dea34f4136f64d1dd536b2ae6b authored almost 2 years ago by matteopilz <[email protected]>
tried to use prefix sphinx to render tooltips

github.com/OpenMS/pyopenms-docs - eac27128cf307af3df33ed04c6a6c45fa1bf1415 authored almost 2 years ago by greengypsy <[email protected]>
trying to fix tooltips and sort glossary

github.com/OpenMS/pyopenms-docs - fdd569ba07c903c02070b9b9eac084bc048881ca authored almost 2 years ago by greengypsy <[email protected]>
made some minor adjustments to the glossary links

github.com/OpenMS/pyopenms-docs - d7f9f86d566929af542abb85398479350ed322de authored almost 2 years ago by greengypsy <[email protected]>
edited orbitrap image and added a line about pyopenms specific loading of tooltips style

github.com/OpenMS/pyopenms-docs - 7bb8fcd1eb1cc96fd2c61549788e8142fac21c58 authored almost 2 years ago by greengypsy <[email protected]>
trying to render glossary and tooltips

github.com/OpenMS/pyopenms-docs - d198bc1a95c7cc948a1fd260c52621f7f81ea56a authored almost 2 years ago by greengypsy <[email protected]>
tidied up glossary links

github.com/OpenMS/pyopenms-docs - 16f42432f83aa9b77e0d50fbb7c8418e9f168ab9 authored almost 2 years ago by greengypsy <[email protected]>
added orbitrap diagram

github.com/OpenMS/pyopenms-docs - 60242897dafe297ad5ac2f7641322fcebf3ddf3a authored almost 2 years ago by greengypsy <[email protected]>
fixed images from markdown to rst. Made one adjustment to glossary sorted flag (indentation)

github.com/OpenMS/pyopenms-docs - 850643379e2b79e414f5e53945127b85f31ccf6f authored almost 2 years ago by greengypsy <[email protected]>
added a full stop to chromatogram definition

github.com/OpenMS/pyopenms-docs - 8a886961913584c3374ec30a80a42c48044a87cf authored almost 2 years ago by greengypsy <[email protected]>
bullet points edited

github.com/OpenMS/pyopenms-docs - 51e27e2e0a256d39761e95de605113577951e8e2 authored almost 2 years ago by greengypsy <[email protected]>
change headings, add admonitions

github.com/OpenMS/pyopenms-docs - 9ce87816b931eee68ba985d629b7c57f9c50824b authored almost 2 years ago by greengypsy <[email protected]>
added glossary to index

github.com/OpenMS/pyopenms-docs - 1a60ecb6afcce3eb32f84c102f6e2b098eb77f49 authored almost 2 years ago by greengypsy <[email protected]>
changed admonition code and fixed image directive

github.com/OpenMS/pyopenms-docs - b4a3e5a3752ca82451c44b826058c5b1bba64d13 authored almost 2 years ago by greengypsy <[email protected]>
add maths and fix video admonition

github.com/OpenMS/pyopenms-docs - 0ac0bd919c809c80b28c63a756d2ed6a1f100c08 authored almost 2 years ago by greengypsy <[email protected]>
added glossary

github.com/OpenMS/pyopenms-docs - 0a72b56572e0450a91a7f362c259ab11295df1a8 authored almost 2 years ago by greengypsy <[email protected]>
changed css to change appearance of admonitions. Fixed math equation

github.com/OpenMS/pyopenms-docs - b1a491a83b2cab7305518ec56fe7c36883b9f301 authored almost 2 years ago by greengypsy <[email protected]>
Merge branch 'new_background'

github.com/OpenMS/pyopenms-docs - e032a6d89f82e1ed60e5ae5bea8533be0ce76fbf authored almost 2 years ago by greengypsy <[email protected]>
New background (#179)

* added css including video image

* added extended background

* added equation for time of...

github.com/OpenMS/OpenMS-docs - ba85a32b6b0ab2adb69b738ee6df1775dbe74266 authored almost 2 years ago by greengypsy <[email protected]>
Update plotting.py

removed leftover #

github.com/OpenMS/OpenMS - 6793e7f44d9001917585e3ab9c343b221816b1a1 authored almost 2 years ago by Matteo Pilz <[email protected]>
Update plotting.py

removed leftover #

github.com/OpenMS/OpenMS-1 - 6793e7f44d9001917585e3ab9c343b221816b1a1 authored almost 2 years ago by Matteo Pilz <[email protected]>
updated plotting tutorials and images

github.com/OpenMS/pyopenms-docs - 1a0ad9828ebb85ab2307aa2bdd084a47ab7f1368 authored almost 2 years ago by matteopilz <[email protected]>
Merge branch 'OpenMS:develop' into develop

github.com/OpenMS/OpenMS-1 - 65beb0527d18663dacfa944b364ba7c67de644ca authored almost 2 years ago by Matteo Pilz <[email protected]>
Merge branch 'OpenMS:develop' into develop

github.com/OpenMS/OpenMS - 65beb0527d18663dacfa944b364ba7c67de644ca authored almost 2 years ago by Matteo Pilz <[email protected]>
updated plotting tutorials and images

github.com/OpenMS/pyopenms-docs - db98ede2e1f259da94ea4076944d3b0db3bfdd78 authored almost 2 years ago by matteopilz <[email protected]>
alignment parameter - top & bottom spectrum needed to be switched

github.com/OpenMS/OpenMS-1 - df419b59823346e739ccf60f1f1a89256fa702fe authored almost 2 years ago by matteopilz <[email protected]>
alignment parameter - top & bottom spectrum needed to be switched

github.com/OpenMS/OpenMS - df419b59823346e739ccf60f1f1a89256fa702fe authored almost 2 years ago by matteopilz <[email protected]>
Update main.yml

github.com/OpenMS/OpenMS-docs - e23a8f2411ff53d3f7f546b8c8dfa7aa0097941e authored almost 2 years ago by Samuel Wein <[email protected]>
explicitly state python version

github.com/OpenMS/OpenMS-docs - d6d0c6fa991f2ed1dda7e931127902af13a45928 authored almost 2 years ago by Samuel Wein <[email protected]>
bump setup-python version

github.com/OpenMS/OpenMS-docs - 254feb45ab1c62ad687328a0313ba27de1fbbcfc authored almost 2 years ago by Samuel Wein <[email protected]>
TOPPView: Remove unsupported flag and fix some warnings (#6597)

* fix redundant inheritance via dominance warnings

* fix uninitialized member warnings

* r...

github.com/OpenMS/OpenMS - 6a957643f994078472c3f7e54f65163243bd0c4e authored almost 2 years ago by Chris Bielow <[email protected]>
TOPPView: Remove unsupported flag and fix some warnings (#6597)

* fix redundant inheritance via dominance warnings

* fix uninitialized member warnings

* r...

github.com/OpenMS/OpenMS-1 - 6a957643f994078472c3f7e54f65163243bd0c4e authored almost 2 years ago by Chris Bielow <[email protected]>
Merge pull request #6599 from bernt-matthias/bump-3rdpty-msgfplus

bump THIRDPARTY

github.com/OpenMS/OpenMS-1 - 941374b2b019e9e33e1027a482600f38329c21a3 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6599 from bernt-matthias/bump-3rdpty-msgfplus

bump THIRDPARTY

github.com/OpenMS/OpenMS - 941374b2b019e9e33e1027a482600f38329c21a3 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
uppercase FROM

github.com/OpenMS/dockerfiles - b90dbfa09e481714986edd58bdef6bfcc47d978c authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
add libpng to usage_stats dockerfile

github.com/OpenMS/dockerfiles - 8faf35b01dbc57130c9030cda2fabfc77bac3b29 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
fix test file

github.com/OpenMS/OpenMS-1 - fa9eb23a5a6f9b3e1c22a16d9a5d684e25aa2c8a authored almost 2 years ago by Timo Sachsenberg <[email protected]>
fix test file

github.com/OpenMS/OpenMS - fa9eb23a5a6f9b3e1c22a16d9a5d684e25aa2c8a authored almost 2 years ago by Timo Sachsenberg <[email protected]>
forgot one occurrence of dockerdeploy

github.com/OpenMS/.github - ae64812170448c259e49a06124b6a9bee17cb9c2 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
moved dockerdeploy to containerdeploy action

github.com/OpenMS/.github - 2824497bef11dbe34c8cce24b907927fb7e65cdb authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
bump THIRPARTY

to include latest MSGF+ https://github.com/OpenMS/THIRDPARTY/pull/91

github.com/OpenMS/OpenMS-1 - 190d34b36b2ed4803b48391c83d3b574989d75f3 authored almost 2 years ago by Matthias Bernt <[email protected]>
bump THIRPARTY

to include latest MSGF+ https://github.com/OpenMS/THIRDPARTY/pull/91

github.com/OpenMS/OpenMS - 190d34b36b2ed4803b48391c83d3b574989d75f3 authored almost 2 years ago by Matthias Bernt <[email protected]>
Merge pull request #91 from bernt-matthias/bump-msgfplus

Update MSGF+ to v20230112

github.com/OpenMS/THIRDPARTY - 6d5a007fa32e558ddc7c31375ad661f62a8f2dd5 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #92 from OpenMS/poshul-patch-1

Update vcredist2010

github.com/OpenMS/THIRDPARTY - 20a248812b10debf3c2c4a9fdc7cd0edfc057602 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Update vcredist2010

github.com/OpenMS/THIRDPARTY - b1f5c75a4dbd75f21eba59ea1431f9676bf5f788 authored almost 2 years ago by Samuel Wein <[email protected]>
Update MSGF+ to v20230112

github.com/OpenMS/THIRDPARTY - 6fb7d0bec87e70736058b1c6c0523d75506591df authored almost 2 years ago by Matthias Bernt <[email protected]>
remove add_decoys option in MSGF+ (#6557)

* remove add_decoys option in MSGF+

* remove tda parameter

* remove parameter from test fi...

github.com/OpenMS/OpenMS - 1d46061cfdc2261d7754654043b5955d985bf857 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
remove add_decoys option in MSGF+ (#6557)

* remove add_decoys option in MSGF+

* remove tda parameter

* remove parameter from test fi...

github.com/OpenMS/OpenMS-1 - 1d46061cfdc2261d7754654043b5955d985bf857 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
simple file downloader (#6564)

* simple file downloader

* fix test filename

* throw exception if file missing

Co-autho...

github.com/OpenMS/OpenMS-1 - 924d180b256805cb42eabcc707951d0236912951 authored almost 2 years ago by Timo Sachsenberg <[email protected]>