Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

OpenMS

Make mass spectrometry analysis accessible to anyone
Collective - Host: opensource - https://opencollective.com/openms - Website: https://openms.org - Code: https://github.com/openms

Merge pull request #6671 from axelwalter/fix/gnpsexport-negative-mode

[Fix] GNPSExport negative mode issues

github.com/OpenMS/OpenMS - e727fc362f3e7b2ec17e825d2dfc00856130e0bd authored over 1 year ago by axelwalter <[email protected]>
'master' branch name has been modified into 'develop'

github.com/OpenMS/contrib - e0445da524f1ad4b503c27416fc1af92b26f83bf authored over 1 year ago by KyowonJeong <[email protected]>
Merge pull request #6708 from cbielow/fix_doccmake

Fix Min Cmake version

github.com/OpenMS/OpenMS - 4c4b0139d22985ddc3317cb21868068d7d23ba61 authored over 1 year ago by Chris Bielow <[email protected]>
split example from Note

github.com/OpenMS/OpenMS - 58423720443f1288b5e0e7b17b0cbae17ddee503 authored over 1 year ago by Chris Bielow <[email protected]>
update Cmake version

github.com/OpenMS/OpenMS - e041fb6182b8cf5d801b9a07b1c224b0d50a8868 authored over 1 year ago by Chris Bielow <[email protected]>
Merge pull request #6703 from cbielow/TV_fix_ctrlw

TOPPView: fix Ctrl-w and Ctrl-a not working and support recent dir for File->Open

github.com/OpenMS/OpenMS - 2fec799ac03c12c72b162046d1d72aeaaf8916c1 authored over 1 year ago by Chris Bielow <[email protected]>
Merge pull request #340 from OpenMS/pypi_local

Pypi local

github.com/OpenMS/pyopenms-docs - 951bf731cd87d5b5ecd395d2c821054f0883af70 authored over 1 year ago by Samuel Wein <[email protected]>
Merge branch 'master' into master

github.com/OpenMS/pyopenms-docs - f123040e7a67175252a60256511dce9be340f4c6 authored over 1 year ago by JihyungKim <[email protected]>
elaborating information about fragments

github.com/OpenMS/pyopenms-docs - eb6ca0c05b7d47473e66c1f30795d7b6a3793221 authored over 1 year ago by JeeH-K <[email protected]>
Merge branch 'develop' into TV_fix_ctrlw

github.com/OpenMS/OpenMS - c2749f4262118d569da5675f5d53d37b306d08d3 authored over 1 year ago by Chris Bielow <[email protected]>
avoid passing '0' to openFileDialog. This enables the 'open recent path' feature again.

github.com/OpenMS/OpenMS - 175900d4c48d0ca79802ffc9ddfa57c4d44e4da8 authored over 1 year ago by Chris Bielow <[email protected]>
remove useless code

github.com/OpenMS/OpenMS - bc7aa1047f830d7e4bdafd1ef82e69e813662adf authored over 1 year ago by Chris Bielow <[email protected]>
Merge pull request #6702 from cbielow/develop

update contrib for XERCES-ICU fix on Windows

github.com/OpenMS/OpenMS - 1731019a6d1877f24c0839c27a0cf824bb354c57 authored over 1 year ago by Chris Bielow <[email protected]>
fix keyboard shortcut (#191)

fix keyboard shortcut (amends
https://github.com/OpenMS/OpenMS/pull/6703)

github.com/OpenMS/OpenMS-docs - c2af13b2d8d0b90b69d7d7337a6f75ab46a148ee authored over 1 year ago by Chris Bielow <[email protected]>
Merge branch 'develop' into develop

github.com/OpenMS/OpenMS - 8f28fe8b27cf496338a5e5bfb9913e7aea2b45a2 authored over 1 year ago by Chris Bielow <[email protected]>
context: dockerfiles/contrib --> context: dockerfiles as @jpfeuffer corrected.

github.com/OpenMS/contrib - d93f41cec644d688f0bacaca8e41998fd910214f authored over 1 year ago by KyowonJeong <[email protected]>
Dokerfiles Checkout part in deploydocker.yml has been removed.

github.com/OpenMS/contrib - 8cf4b3a3229d310177544aad1e59774526652167 authored over 1 year ago by KyowonJeong <[email protected]>
update user guide (#192)

* update user guide

* Update openms-user-tutorial.md

* Update openms-user-tutorial.md

*...

github.com/OpenMS/OpenMS-docs - 41a3252cc80764bf06aba582f36ab8cc80fe5e98 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
add pytest as a requirement (#345)

* add pytest as a requirement

Seems that pytest is needed for testing?

* reaplce nose with...

github.com/OpenMS/pyopenms-docs - 3f2b344d70aa66ae75f1417f74d9ca54e7e7d423 authored over 1 year ago by Joshua Charkow <[email protected]>
show how to correctly reference stuff (#152)

* show how to correctly reference stuff.

* old webserver

github.com/OpenMS/OpenMS-docs - 18d02aa1afa7f3f924cbe2541b63b3e8759a0e23 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Update installation-on-gnu-linux.md

github.com/OpenMS/OpenMS-docs - e0e7ef2b37f954bc3f44d99f2af675ee71f06ffd authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Update installation-on-macos.md

github.com/OpenMS/OpenMS-docs - 1a28dea07f5651e3e405b79027913adfc1ca66c9 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Update openms-user-tutorial.md

github.com/OpenMS/OpenMS-docs - 1091190c9e1d320ae0941976d3cf18ebec2ad2f1 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Publishing Site OpenMS/openms.de at 9a2ff2b113bf220f55aa71a480dc613ebc5c88ae on Thu Feb 16 13:45:51 UTC 2023

github.com/OpenMS/openms.github.io - ba2ce48dddd3c895db5ba6ecbd09655a4f113fee authored over 1 year ago by timosachsenberg <[email protected]>
Merge pull request #70 from JeeH-K/add_fdq_page

Added FLASHDeconvQ page and edited the relevant page

github.com/OpenMS/OpenMS-website - 9a2ff2b113bf220f55aa71a480dc613ebc5c88ae authored over 1 year ago by Timo Sachsenberg <[email protected]>
FIX typo in knime properties

github.com/OpenMS/OpenMS - 04c5d804816a5b34304f549eac5c23e5bba486bf authored over 1 year ago by Julianus Pfeuffer <[email protected]>
fixing linting warning

github.com/OpenMS/pyopenms-docs - b5aac3b9d9244c570e921435a3e10ee7f9c25ac1 authored over 1 year ago by JeeH-K <[email protected]>
Expanding theoretical spectrum generation tutorial by introducing more parameters

For the issue https://github.com/OpenMS/pyopenms-docs/issues/291

github.com/OpenMS/pyopenms-docs - a3b0f7a6da0d1957e9082804820034e90e67273f authored over 1 year ago by JeeH-K <[email protected]>
Ctrl-B instead of Ctrl-A to avoid collision with "Annotate with Accurate Mass Search results" in main menu

github.com/OpenMS/OpenMS - a8c1c151c43c707387fc4038d572eb86813418dd authored over 1 year ago by Chris Bielow <[email protected]>
impl

github.com/OpenMS/OpenMS - 1befd5c3ceab93beb50826f4f30f92ecfc24d715 authored over 1 year ago by Chris Bielow <[email protected]>
add new subwindow interface which does not introduce a system menu for the child

github.com/OpenMS/OpenMS - 5f6e577e48a3b316435c97d48946cd5f8730f7ec authored over 1 year ago by Chris Bielow <[email protected]>
update contrib

github.com/OpenMS/OpenMS - 9335d8b381890b4415fc26b7e3f996bbe52855f6 authored over 1 year ago by Chris Bielow <[email protected]>
contrib files have been removed. Now in OpenMS/contrib/dockerfiles

github.com/OpenMS/dockerfiles - 1e68506396a7cf99a70275ef4cbb4e7b36d772e5 authored over 1 year ago by KyowonJeong <[email protected]>
Merge pull request #125 from cbielow/fix_xercesICU

Fix xerces icu

github.com/OpenMS/contrib - 068bd508704bba5e28e3268cf75e49f855100ea8 authored over 1 year ago by Chris Bielow <[email protected]>
Publishing Site OpenMS/openms.de at 9c0993e5338271e8180e8053076acf06ae22aad3 on Thu Feb 16 08:10:19 UTC 2023

github.com/OpenMS/openms.github.io - ea157fb96c17170b83988989653a1dd6f359e2a6 authored over 1 year ago by rahul799 <[email protected]>
Update tutorials.md

github.com/OpenMS/OpenMS-website - 9c0993e5338271e8180e8053076acf06ae22aad3 authored over 1 year ago by Rahul Agrawal <[email protected]>
Dockerfiles from OpenMS/dockerfiles have been moved to contrib/dockerfiles

github.com/OpenMS/contrib - a896ece84a25925b2d64646f30ca2ca4d568ee02 authored over 1 year ago by KyowonJeong <[email protected]>
Update datastructures_peak.rst

fixed plotting imports

github.com/OpenMS/pyopenms-docs - bd4afc8e654ece73c5bc2d6ba33b7ab7498ac452 authored over 1 year ago by Matteo Pilz <[email protected]>
Update spectrumalignment.rst

fixed plotting imports

github.com/OpenMS/pyopenms-docs - 5dcf4eadb5055e78e976fa29fa59ee8d32607158 authored over 1 year ago by Matteo Pilz <[email protected]>
Update theoreticalspectrumgenerator.rst

fixed plotting imports

github.com/OpenMS/pyopenms-docs - 556753645ab4ff46f2014520c792c17269da3357 authored over 1 year ago by Matteo Pilz <[email protected]>
[Feature] OMS file format read/write speedup, v2 (#6699)

Reimplementation of #6147 due to merge conflicts.

Merges the DataValue table into each _MetaI...

github.com/OpenMS/OpenMS - 25ec4fc15b1fa80046f49dc9164fcdcbc3b9264f authored over 1 year ago by Eugen Netz <[email protected]>
also copy description and copyright to knime features

github.com/OpenMS/OpenMS - 546c72020179d0113876818862376a8bc9a03241 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into feature/update-sirius-5.6.3

github.com/OpenMS/OpenMS - f2e866f920632d905ca3db81dc16ec420b74f044 authored over 1 year ago by axelwalter <[email protected]>
revert to sirius 5.6.3

github.com/OpenMS/OpenMS - 4dc3c76107c3fb01c5f308d3202672b8375853ed authored over 1 year ago by axelwalter <[email protected]>
Merge pull request #96 from axelwalter/revert-to-sirius-5.6.3

Revert to sirius 5.6.3

github.com/OpenMS/THIRDPARTY - 4b201939f5e2fc106e3ca254e04caaafcb962782 authored over 1 year ago by axelwalter <[email protected]>
Revert "sirius 5.6.4-snapshot"

This reverts commit 7e08e119851b2993bd6ec60063a62f2938c4db31.

github.com/OpenMS/THIRDPARTY - 26169c0bc73f69790cc3efd10d7f50ce1d761dc5 authored over 1 year ago by axelwalter <[email protected]>
Revert "update Sirius Linux jar files"

This reverts commit 935d1018ac3c3a5d2c1af3969cfb153159530590.

github.com/OpenMS/THIRDPARTY - c8f145f78ece37d3d693b0f98567f854f4914d81 authored over 1 year ago by axelwalter <[email protected]>
Merge pull request #6694 from axelwalter/fix/pyopenms-assets-dont-copy-folders

[Fix] pyopenms assets don't copy folders

github.com/OpenMS/OpenMS - b28b5c37fc4d79f2ed6a23eee69e26f3b72c2692 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
pypify postbuild

github.com/OpenMS/pyopenms-docs - 0e61b3e5c5fa14e5b531e344f98b8b95e31f10ce authored over 1 year ago by Samuel Wein <[email protected]>
update test-pr

github.com/OpenMS/pyopenms-docs - a653e2b0d2d514ce6df544c5e20fbaa605e94ab6 authored over 1 year ago by Samuel Wein <[email protected]>
update test-notebooks to use our pypi server

github.com/OpenMS/pyopenms-docs - d18acea12108c8d0db5a0f03876eb182982cd95f authored over 1 year ago by Samuel Wein <[email protected]>
[FIX] fixed the use of a non-ASCII character, second case (#6695)

* [FIX] fixed the use of a non-ASCII character

Fixes an issue mentioned in #6676

Replaced ...

github.com/OpenMS/OpenMS - b6ddc738df7b344dc7f18786454779f9a9de72ec authored over 1 year ago by Eugen Netz <[email protected]>
use our pypi server

github.com/OpenMS/pyopenms-docs - 2ce621ecff08a84fd87b8be33848f1322aff86e4 authored over 1 year ago by Samuel Wein <[email protected]>
clarify ref to nightly

github.com/OpenMS/pyopenms-docs - 0f0243130943a4b6be4dba3628aadcf382ec0a98 authored over 1 year ago by Samuel Wein <[email protected]>
update install information for nightly

github.com/OpenMS/pyopenms-docs - 8e51dbcb58ad4d56d60ca344a96211d11d9a8e8c authored over 1 year ago by Samuel Wein <[email protected]>
pyopenms assets don't copy folders

github.com/OpenMS/OpenMS - 3d7a28de476b1cd7302af423b83061f77045fc9e authored over 1 year ago by axelwalter <[email protected]>
update THIRDPARTY

github.com/OpenMS/OpenMS - 7c82f94862edf3b457ba0f4f75b5c9518f90ef1c authored over 1 year ago by axelwalter <[email protected]>
Merge pull request #95 from axelwalter/master

Update Sirius Linux jar files

github.com/OpenMS/THIRDPARTY - 01098d359a02189ef28464fb3c5a584b6bed80a5 authored over 1 year ago by axelwalter <[email protected]>
update Sirius Linux jar files

github.com/OpenMS/THIRDPARTY - 935d1018ac3c3a5d2c1af3969cfb153159530590 authored over 1 year ago by axelwalter <[email protected]>
Merge pull request #6692 from poshul/fix/thiolmasses

Fix/thiolmasses

github.com/OpenMS/OpenMS - 370c73241d0daa2ea891762cee4cce2a5a1de683 authored over 1 year ago by Samuel Wein <[email protected]>
[noop] remove debugging

github.com/OpenMS/OpenMS - ef4b8773b1c18b2e0630519f2a1d486cd84dba97 authored over 1 year ago by Samuel Wein <[email protected]>
[fix] fixed extra H

github.com/OpenMS/OpenMS - b7c102ea9d98c58d0679f74d11dce755d551eb78 authored over 1 year ago by Samuel Wein <[email protected]>
[nop] fix whitespace

github.com/OpenMS/OpenMS - e79a9a63bf53cc39bb5b28b36b1eb2989f4de195 authored over 1 year ago by Samuel Wein <[email protected]>
[fix] fix

github.com/OpenMS/OpenMS - e036852b33dd9099040d9c297a727f9f46b7c749 authored over 1 year ago by Samuel Wein <[email protected]>
[fix] more fixing

github.com/OpenMS/OpenMS - 9ff9cfcb308134b94a745cf25383f885170ebec4 authored over 1 year ago by Samuel Wein <[email protected]>
[fix] fixed issue with w and x ion masses for thiols

github.com/OpenMS/OpenMS - 67b1494e98e7da3f3f032ba986413de8be0aaf59 authored over 1 year ago by Samuel Wein <[email protected]>
Added FLASHDeconvQ page and edited the relevant page

github.com/OpenMS/OpenMS-website - 71b735c71c362920f39d0c654f199732e090efbb authored over 1 year ago by JeeH-K <[email protected]>
Merge pull request #6689 from enetz/fix/xquest_nonascii

[FIX] fixed the use of a non-ASCII character, mentioned in #6676

github.com/OpenMS/OpenMS - 1dc6178fd167ec037724d27526d6243252c1b07b authored over 1 year ago by Eugen Netz <[email protected]>
[FIX] fixed the use of a non-ASCII character, mentioned in #6676

Fixes an issue mentioned in #6676

Replaced the use of a non-ASCII character in XQuestResultXMLH...

github.com/OpenMS/OpenMS - e4c2fef313b1fac466fdcd292ec3792cacd6853b authored over 1 year ago by enetz <[email protected]>
Merge branch 'develop' into feature/update-sirius-5.6.3

github.com/OpenMS/OpenMS - 6c33e6ba09dbfdaa3d92be7370d17323bb41828f authored over 1 year ago by axelwalter <[email protected]>
added ref to nightly builds

github.com/OpenMS/pyopenms-docs - e6c2a3560dbf6fa2e98d1ded8f3f7935d36d0de0 authored over 1 year ago by Samuel Wein <[email protected]>
Fix/topp view ms2 only (#6646)

* [fix] fix LayerDataBase assignment of non-MS1 spectra with no chromatogram

* [fix] better h...

github.com/OpenMS/OpenMS - b0b01eb27377a60dcae7905b1f8dd61d96df3aec authored over 1 year ago by Samuel Wein <[email protected]>
update test files

github.com/OpenMS/OpenMS - fc7947eb99b9b517b1857d4a1549cd3bcfc159e3 authored over 1 year ago by axelwalter <[email protected]>
update to sirius 5.6.4-snapshot

github.com/OpenMS/OpenMS - 7facc7e35627b528c986b4b3d9a78359aeb5b402 authored over 1 year ago by axelwalter <[email protected]>
Merge pull request #94 from axelwalter/sirius-5.6.4-snapshot

sirius 5.6.4-snapshot

github.com/OpenMS/THIRDPARTY - a3734c0f62d5ce1407d945567b0ffc4269a41340 authored over 1 year ago by axelwalter <[email protected]>
sirius 5.6.4-snapshot

github.com/OpenMS/THIRDPARTY - 7e08e119851b2993bd6ec60063a62f2938c4db31 authored over 1 year ago by axelwalter <[email protected]>
use MacOS CI test file results

github.com/OpenMS/OpenMS - fe56bd8b6f34ffad032bb59888b549c9a52d39c7 authored over 1 year ago by axelwalter <[email protected]>
update SiriusAdapter test files

github.com/OpenMS/OpenMS - 291f069393acc76c0bc6e7853350af68922992c0 authored over 1 year ago by axelwalter <[email protected]>
Improves the design of IdentificationData a bit (#6682)

* first attempt to remove some of the dependencies

* dependency injection of filter code

*...

github.com/OpenMS/OpenMS - 3dc94c3b1acf0ac9919a375b4d31abf97e240fd2 authored over 1 year ago by Timo Sachsenberg <[email protected]>
remove SiriusAdapter test 8 and 9 masses from whitelist

github.com/OpenMS/OpenMS - 5d369a58448ddac005d5e7f15a08ac08991a5770 authored over 1 year ago by axelwalter <[email protected]>
create different startup checks for openms and thirdparty

github.com/OpenMS/de.openms.knime - 2edfba4da3311b34887366acc311fe4ee6d3b700 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
make hdf5 optional (#6677)

* make HDF5 optional

* also in source files

* Update sources.cmake

* add generator expr...

github.com/OpenMS/OpenMS - 00171d3ba5b433920c3fa53ae377af2343c71f1a authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into fix/gnpsexport-negative-mode

github.com/OpenMS/OpenMS - 9b26a767ccaf4a1ae42e4b8df50c31ce5f440fcc authored over 1 year ago by Timo Sachsenberg <[email protected]>
fix #6638 and not opening a 1D view (#6684)

* fix deprecation warning

* fix bug which leads to segfault when storing visible 1D spectra/c...

github.com/OpenMS/OpenMS - b87b35e9d87f4fc9255217911b8662bd7727a1a0 authored over 1 year ago by Chris Bielow <[email protected]>
and _in suffix in runTOPPTool_ (#6683)

github.com/OpenMS/OpenMS - 8d8ad4ab1539d1427cc4caa93d5392b81e6e6acf authored over 1 year ago by Timo Sachsenberg <[email protected]>
[FIX] knime compression with cmake

github.com/OpenMS/OpenMS - e38a7a2e4fb095a666de0a3b12c7215a60671e62 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
update thirdparty with sirius 5.6.3

github.com/OpenMS/OpenMS - 7c1e5768c7622cb1ff30f1ce81334fd5c566401d authored over 1 year ago by axelwalter <[email protected]>
fix log variables

github.com/OpenMS/contrib - f13a4f0c8ef38d68934d60d7bd40a6d103c972e4 authored over 1 year ago by Chris Bielow <[email protected]>
windows: disable search for ICU since it leads to compile errors (see https://github.com/OpenMS/OpenMS/issues/6639)

github.com/OpenMS/contrib - 37302ec747bd8b0f81f1c44bc34f08335dbc3da3 authored over 1 year ago by Chris Bielow <[email protected]>
Merge branch 'master' of https://github.com/OpenMS/contrib

github.com/OpenMS/contrib - 0a2ba19d7997acf55ca6d126f6771c85e0ed8ad1 authored over 1 year ago by Chris Bielow <[email protected]>
TOPPView: fix selection and name of chromatograms (#6673)

* fix deprecation warning

* fix bug which leads to segfault when storing visible 1D spectra/c...

github.com/OpenMS/OpenMS-1 - 293755fd96d2f8da2c9abb988472282566ae82b2 authored over 1 year ago by Chris Bielow <[email protected]>
TOPPView: fix selection and name of chromatograms (#6673)

* fix deprecation warning

* fix bug which leads to segfault when storing visible 1D spectra/c...

github.com/OpenMS/OpenMS - 293755fd96d2f8da2c9abb988472282566ae82b2 authored over 1 year ago by Chris Bielow <[email protected]>
Merge pull request #93 from axelwalter/sirius-5.6.3-release

update to sirius 5.6.3

github.com/OpenMS/THIRDPARTY - c5985e94e663a776b2ddf8a08e7461deb63aed20 authored over 1 year ago by axelwalter <[email protected]>
update to sirius 5.6.3

github.com/OpenMS/THIRDPARTY - 83b0c783f929cfba165caeb94a9bad2eae9be847 authored over 1 year ago by axelwalter <[email protected]>
[FIX] Variable order in knime packaging

github.com/OpenMS/OpenMS-1 - 2342b8dc29c72ff55654519abb096de20e998bfb authored over 1 year ago by Julianus Pfeuffer <[email protected]>
[FIX] Variable order in knime packaging

github.com/OpenMS/OpenMS - 2342b8dc29c72ff55654519abb096de20e998bfb authored over 1 year ago by Julianus Pfeuffer <[email protected]>
use "de.openms" as knime plugin ID to be backwards-compatible

github.com/OpenMS/OpenMS - 12987bb2b47f28bca6215c3bff3e33ecea300dc8 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
use "de.openms" as knime plugin ID to be backwards-compatible

github.com/OpenMS/OpenMS-1 - 12987bb2b47f28bca6215c3bff3e33ecea300dc8 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
annote negative charges in gnps mgf file

github.com/OpenMS/OpenMS - 111ef8ff9099896bb9b91cc26b7f8d4e1fbc2637 authored over 1 year ago by axelwalter <[email protected]>
[FIX] All Zero MS1 Feature Scores (#6664)

* [FIX] empty MS1 Feature Scores

* [FIX] Remove unnecessary brackets

github.com/OpenMS/OpenMS - 13b285e97ab7aeb32aeb297a72096b480e2a140d authored over 1 year ago by Justin Sing <[email protected]>