Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

OpenMS

Make mass spectrometry analysis accessible to anyone
Collective - Host: opensource - https://opencollective.com/openms - Website: https://openms.org - Code: https://github.com/openms

add checking for completeness of ribo jsons, calculate mono-mass from formula if not otherwise specified

github.com/OpenMS/OpenMS - 23e98245a3eb816a93cae95ea4355be984406a89 authored over 1 year ago by Samuel Wein <[email protected]>
Added margins to workflows-logos.png

github.com/OpenMS/OpenMS-website - 866bfd8b6c79b5566c6918b4e7db47023fb67de4 authored over 1 year ago by matteopilz <[email protected]>
Update wrapping_workflows_new_classes.rst

github.com/OpenMS/pyopenms-docs - ac2f31db39325c5b364873618313723dc16329a2 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Cleanup FIXME's

github.com/OpenMS/OpenMS - d13e0cee7c9145944012c5e031a21e224075888c authored over 1 year ago by Samuel Wein <[email protected]>
Merge branch 'develop' into feature/modomicsJSON

github.com/OpenMS/OpenMS - ecb077d8411f2d40d3c8aafd2635aa5f22f14ee2 authored over 1 year ago by Samuel Wein <[email protected]>
added feature to changelog

github.com/OpenMS/OpenMS - 8b707b9e0d72530d01b67da44919d8983eca2c1a authored over 1 year ago by Samuel Wein <[email protected]>
Merge pull request #6763 from OpenMS/fix_action

Update update_version_numbers.yml

github.com/OpenMS/OpenMS - c9266ae4f3163050acee22396b43d768641e6cbf authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6764 from jpfeuffer/fix/knime

[FIX][KNIME] fixup script to handle knime case on macos

github.com/OpenMS/OpenMS - 498bc040532570569a3429682003045ad862ffe3 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into feature/modomicsJSON

github.com/OpenMS/OpenMS - bffe329d37b0d41ca15aeca3738c9b87242b4d9a authored over 1 year ago by Samuel Wein <[email protected]>
[fix] move deoxyribo's to Custom_RNA_modifications

github.com/OpenMS/OpenMS - 32a69a53a5ef1af38af5012ca79a89698bb8c04e authored over 1 year ago by Samuel Wein <[email protected]>
typo

github.com/OpenMS/OpenMS - 911eb0fc38728cf1c74850f975a2c4b16a8dd2c2 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
comment

github.com/OpenMS/OpenMS - 567ac1460b65d5f4a0eba100220e8c2db87f20d2 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
fix fixup script to handle knime case on macos

github.com/OpenMS/OpenMS - 9af85ffeeb8749f7c217047c9ceab7dad8b1d4d8 authored over 1 year ago by Builder <[email protected]>
[fix] fixed bogus Modomics masses

github.com/OpenMS/OpenMS - dc374d4bdf173b2dd22bbd13517e5863f6c04eae authored over 1 year ago by Samuel Wein <[email protected]>
Update OpenSwathDIAPreScoring.cpp (#6762)

github.com/OpenMS/OpenMS - 9d39da058bb4625a3292a0d01ed4f65593050801 authored over 1 year ago by Samuel Wein <[email protected]>
Update update_version_numbers.yml

github.com/OpenMS/OpenMS - 009d6b2deadf0a7e7d307d2dacadaeec888ee1e5 authored over 1 year ago by Timo Sachsenberg <[email protected]>
[fix] enable adducts in NASE test (#6761)

github.com/OpenMS/OpenMS - d076df2058e9a7425779596754568eee5dc61359 authored over 1 year ago by Samuel Wein <[email protected]>
Update pyopenms-wheels.yml

github.com/OpenMS/OpenMS - 02ec96cf08435e2676c6d94fce51702c4d385f4e authored over 1 year ago by Timo Sachsenberg <[email protected]>
Fixed paths and added optional loading of user specified mods in either tsv or json

github.com/OpenMS/OpenMS - 8642947711206665feda500241d4cd674d97961b authored over 1 year ago by Samuel Wein <[email protected]>
[feature] add modomics.json fix ambiguities mapping

github.com/OpenMS/OpenMS - 85621067fc08cda43c07bfccac57538afc7b00c0 authored over 1 year ago by Samuel Wein <[email protected]>
Merge remote-tracking branch 'upstream/develop' into feature/modomicsJSON

github.com/OpenMS/OpenMS - 7ba46183adb26c2c371fa6ac6e3350f0c6b6c051 authored over 1 year ago by Samuel Wein <[email protected]>
Fix undefined behavior for counting charges in adducts

github.com/OpenMS/OpenMS - d2a64a62e870165558a8eebdf761d5bbaa71fae5 authored over 1 year ago by Samuel Wein <[email protected]>
Update background.rst

github.com/OpenMS/pyopenms-docs - 14a8638c35265e53749a80d12bb37226713e92be authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge remote-tracking branch 'matteo/main' into main

github.com/OpenMS/OpenMS-website - f4d2dfe6f8c71ec09df5bc48a7d943f82fd88d39 authored over 1 year ago by matteopilz <[email protected]>
Merge remote-tracking branch 'origin/main' into main

github.com/OpenMS/OpenMS-website - 2f475c09db3d7f3081128575a7c61ce90c3afdc4 authored over 1 year ago by matteopilz <[email protected]>
Update content/en/config.yaml

Co-authored-by: Timo Sachsenberg <[email protected]>

github.com/OpenMS/OpenMS-website - 38f820adf23b68dd6687cce03ee8ba711b963ed6 authored over 1 year ago by Matteo Pilz <[email protected]>
Fix/id mapper (#6758)

* fix TMT IDMapper bug

* update test

---------

Co-authored-by: timosachsenberg <sachsen...

github.com/OpenMS/OpenMS - 80432dfbd8a539a109f879cc39b40e38ef83f012 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update test_pyopenms.yml

github.com/OpenMS/OpenMS - e8f69f157c875a1d4e8fe0e1a8f8c15c8e5d8902 authored over 1 year ago by Samuel Wein <[email protected]>
Merge pull request #6726 from matteopilz/develop

Add trigger to pyopenms nightlies test / use pyopenms-versions in pyopenms-wheels

github.com/OpenMS/OpenMS - 64c888738c2365134453d825146b167b36d7ceb4 authored over 1 year ago by Samuel Wein <[email protected]>
Merge pull request #6679 from axelwalter/feature/update-sirius-5.6.3

Update THIRDPARTY with Sirius 5.6.3

github.com/OpenMS/OpenMS - ae91f8434e5434d602e9d1822de78e9024647be1 authored over 1 year ago by Samuel Wein <[email protected]>
Merge pull request #6752 from OpenMS/jpfeuffer-patch-5

[FIX][PYOMS] only run mac_fix_deps if wheel includes dependencies

github.com/OpenMS/OpenMS - 5f4a873ddc7be961a1f4f73b1273c5e0a65f1459 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6753 from OpenMS/jpfeuffer-patch-7

[KNIME] also use install_name_dir at build time

github.com/OpenMS/OpenMS - eeeafee02103ed945c583491054622cdc230be5e authored over 1 year ago by Julianus Pfeuffer <[email protected]>
[KNIME] also use install_name_dir at build time

github.com/OpenMS/OpenMS - c6c4fd2bdce35da647b8d237779a708b5a06376e authored over 1 year ago by Julianus Pfeuffer <[email protected]>
without checkout

github.com/OpenMS/contrib - 12405641412b4ea7ffd9c3680ee2b87adf006f2e authored over 1 year ago by Timo Sachsenberg <[email protected]>
Timosachsenberg patch 2 (#133)

* Update deploy-manylinux-docker.yml

* Update Dockerfile

github.com/OpenMS/contrib - 1ab1389d357fac48d0e3fec427a7f973f609b239 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update Dockerfile

github.com/OpenMS/contrib - e545bf0da77c9af1945c6311518d2e291b256b56 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update Dockerfile

github.com/OpenMS/contrib - cb103a0e03342aea2accf5dade595af206c19edd authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update deploy-manylinux-docker.yml

github.com/OpenMS/contrib - 1345df558d5ead7c019e24e06e961389cc3e1ad0 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update Dockerfile

github.com/OpenMS/contrib - f35f44d6bc6ecd40c3da48e35e8b9eb8e06a2a09 authored over 1 year ago by Timo Sachsenberg <[email protected]>
removed unused Dockerfile_min

github.com/OpenMS/contrib - 521cb073b4aade43928df8137df93d5f4be45a9c authored over 1 year ago by Timo Sachsenberg <[email protected]>
Create readme.md

github.com/OpenMS/contrib - e3c3c427fcefa80a5677f038b63876ca2e9fa05f authored over 1 year ago by Timo Sachsenberg <[email protected]>
proper file input

github.com/OpenMS/contrib - 513af2b2a9dd4b37c51cf005888f3302a14b142e authored over 1 year ago by Timo Sachsenberg <[email protected]>
another attempt

github.com/OpenMS/contrib - 0ee87a0af544ccf159d06869971148d1da241492 authored over 1 year ago by Timo Sachsenberg <[email protected]>
new attempt with context

github.com/OpenMS/contrib - 3d98f377947997f8f43278637684d0d38cfcdf0f authored over 1 year ago by Timo Sachsenberg <[email protected]>
[FIX][PYOMS] only run mac_fix_deps if wheel includes dependencies

important for conda

github.com/OpenMS/OpenMS - 38516ac88f9f60cac70a5d9fa7c9f881b7ea39ab authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Fix/deploy docker (#132)

* checkout repo to get context

* checkoutcontext

* lower/upper case?

* test

github.com/OpenMS/contrib - e68abfe72ccd6337a1dfa04bffc735ae0af505fd authored over 1 year ago by Timo Sachsenberg <[email protected]>
Fix/deploy docker (#131)

* checkout repo to get context

* checkoutcontext

* lower/upper case?

github.com/OpenMS/contrib - 33b5b837ba42e28069856b981742ca2c57c26e58 authored over 1 year ago by Timo Sachsenberg <[email protected]>
checkout repo to get context (#130)

* checkout repo to get context

* checkoutcontext

github.com/OpenMS/contrib - 39932d7707a981886ca57067d5ba4b8622bd8765 authored over 1 year ago by Timo Sachsenberg <[email protected]>
KNIME share and libs now contributed by resource plugins

github.com/OpenMS/OpenMS - d05732d30da167ec96de31632ab4340d5295b6d3 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Use the new OpenMSToolExecutor class to consider the lib plugin at the extension point in KNIME

github.com/OpenMS/OpenMS - 814f56988587af81c6a947f42a065861a33a091f authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Also use pyopenms as package name on our pypi server (#6749)

* Update setup.py

* always push to your pypi

github.com/OpenMS/OpenMS - 7eb82ad5ce9be3d09b1695761d12e417d27e762b authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into develop

github.com/OpenMS/OpenMS - fe87e42f7a125823795d60b0750ebcff66da79fd authored over 1 year ago by Timo Sachsenberg <[email protected]>
support SVR in SimpleSVM (#6691)

* support SVR in SimpleSVM

* added test for regression

* update doc

* Update SimpleSVM....

github.com/OpenMS/OpenMS - 63d101a76133b246743238276b2727ee31382b33 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into feature/update-sirius-5.6.3

github.com/OpenMS/OpenMS - f11f0e9c173e3687ae284363f078a66d972c4c2f authored over 1 year ago by axelwalter <[email protected]>
Update citest.cmake

github.com/OpenMS/OpenMS - 86e6fb1b5a148dca116b647ffef9db2bac662988 authored over 1 year ago by Timo Sachsenberg <[email protected]>
allow percolatoradapter to properly handle a corner cases when same peptide had the same scan number in merged files (#6698)

* allow percolatoradapter to properly handle a corner cases when same peptide had the same scan ...

github.com/OpenMS/OpenMS - 07d35ff5825203c8f5d2f540029f70350563d23c authored over 1 year ago by Timo Sachsenberg <[email protected]>
Re-organize quick start guide locations (#195)

* Re-organize quick start guide locations

Both user and contributors quick start guides were ...

github.com/OpenMS/OpenMS-docs - 9845341586c2416c5b5ec42c155c6ff19fae6835 authored over 1 year ago by axelwalter <[email protected]>
remove OpenMS checkout from contrib (#128)

* remove OpenMS checkout from contrib

* Update dockerfiles/pyopenms/manylinux/Dockerfile

*...

github.com/OpenMS/contrib - dfb65f7a1e989c4a77aa4eb2c35725d1fbf52d45 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update run_tests.cmake

github.com/OpenMS/build-scripts - b4b767e93454ab3b7d96e8f55531969ac57a5745 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update os_compiler_matrix.tsv

github.com/OpenMS/OpenMS - de1552da8c3583aa50a5fa9b949b64399e0ff010 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Publishing Site OpenMS/openms.de at a460ea085975ad78b77beaefd6e4d7e52fe71137 on Fri Mar 3 10:33:40 UTC 2023

github.com/OpenMS/openms.github.io - d748a00add8b907991aec8e220e9c35fb3cb9f15 authored over 1 year ago by poshul <[email protected]>
Merge pull request #74 from OpenMS/Cdash-redirect

Update _redirects

github.com/OpenMS/OpenMS-website - a460ea085975ad78b77beaefd6e4d7e52fe71137 authored over 1 year ago by Samuel Wein <[email protected]>
Update _redirects

github.com/OpenMS/OpenMS-website - aae4086507f5921ab3b88b0f32d2029cd119c7b1 authored over 1 year ago by Samuel Wein <[email protected]>
Update _redirects

github.com/OpenMS/OpenMS-website - 4891e4a2d554d9e5385ee31845a9604f932561db authored over 1 year ago by Samuel Wein <[email protected]>
disable host certificate check

github.com/OpenMS/OpenMS - 2d8c149d2f86edf8c5c17a1cb3471925b657b6e8 authored over 1 year ago by Timo Sachsenberg <[email protected]>
ID Datastructure rule of 6 (#6736)

* rule of 6

* shortened code a bit

* fix

* Update src/tests/class_tests/openms/source/I...

github.com/OpenMS/OpenMS - 3ec84c3d7dcd1312be5d78b5d8ea1538f2667bf3 authored over 1 year ago by Timo Sachsenberg <[email protected]>
changes to version action

github.com/OpenMS/OpenMS - d9e1a20721c03ca39c9e2c3960f91186b4ac7713 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6737 from JeeH-K/adding_action_updating_version

Adding new git action for updating OpenMS package numbers

github.com/OpenMS/OpenMS - 1848b813649f9771fefebbebb22b4a324140b9b9 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
revert to trigger the action manually

github.com/OpenMS/OpenMS - ef4b9fc6082e2adf66a001cfee6208ca678a85f4 authored over 1 year ago by JeeH-K <[email protected]>
Merge branch 'develop' into adding_action_updating_version

github.com/OpenMS/OpenMS - c8fd28766655fecb6bb3ea85415193aaa09002a0 authored over 1 year ago by JihyungKim <[email protected]>
Replaced deprecated set-env

github.com/OpenMS/OpenMS - 7ea61f86a63b8e2d20315d88a3487d62b7c74dd0 authored over 1 year ago by JeeH-K <[email protected]>
fixing typo

github.com/OpenMS/OpenMS - 1668ee4f131735342e553df1f616be7d942eb651 authored over 1 year ago by JeeH-K <[email protected]>
fixing setting variable error

github.com/OpenMS/OpenMS - fb5e84011e9ae66ce470ba1c9d6b386fbde4175c authored over 1 year ago by JeeH-K <[email protected]>
fixing setting variable error

github.com/OpenMS/OpenMS - def10040c75496d4cb85c1c795d512275bd3eff0 authored over 1 year ago by JeeH-K <[email protected]>
fixing regex error

github.com/OpenMS/OpenMS - 62a75ee8f2b4cfc488785b6ca8300f36d60eb602 authored over 1 year ago by JeeH-K <[email protected]>
setting variable in run

github.com/OpenMS/OpenMS - 8e0b8cbdd9d70e4f8049b202e7c7cdd8c14d0f80 authored over 1 year ago by JeeH-K <[email protected]>
setting variable separately

github.com/OpenMS/OpenMS - e0c3f299a89beed627e29a8d5445e488f477bd78 authored over 1 year ago by JeeH-K <[email protected]>
fix bug on variable out of variable

github.com/OpenMS/OpenMS - f9f234c4884c6b5faf6ab9116d362328a2105556 authored over 1 year ago by JeeH-K <[email protected]>
fix bug on checking out files

github.com/OpenMS/OpenMS - ae57ba000efdedc2481152a4f7724d787639a2bf authored over 1 year ago by JeeH-K <[email protected]>
fix bug on file path

github.com/OpenMS/OpenMS - c0e17905a3ed0d7a1da6e56e3cab446f0d2925d8 authored over 1 year ago by JeeH-K <[email protected]>
fix bug on variables

github.com/OpenMS/OpenMS - 075af1da8763a479356594aced1b41543b9c07cd authored over 1 year ago by JeeH-K <[email protected]>
trying to test run

github.com/OpenMS/OpenMS - d8383e9d8f2bebc0295bb3a4b155ab39c31c0668 authored over 1 year ago by JeeH-K <[email protected]>
I think action is broken for now... removing it again

Checking if a PR command...
https://api.github.com/repos/OpenMS/OpenMS/pulls/6736
Collecting i...

github.com/OpenMS/OpenMS - 1a17ee4267f97714aff8c08d6f84c9512a462477 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update automatic_revert.yml

github.com/OpenMS/OpenMS - 45dd43f224246a9abbd1c823598c2e3c36eb9669 authored over 1 year ago by Timo Sachsenberg <[email protected]>
revert_action

simple revert action

github.com/OpenMS/OpenMS - 5bcaf023fddeace7897f4d79785882824a3a1a48 authored over 1 year ago by Timo Sachsenberg <[email protected]>
trying to test run

github.com/OpenMS/OpenMS - 3cef63066e4320457b1f2cf677b6cd2709a8adf6 authored over 1 year ago by JeeH-K <[email protected]>
fixing error on runs-on

github.com/OpenMS/OpenMS - 5be480c77487252857134ef65fd3d0c69f2b4ba9 authored over 1 year ago by JeeH-K <[email protected]>
put every commands in one job [skip ci]

github.com/OpenMS/OpenMS - bf9ea34f83a830adcca6491432b2372b83e85c8e authored over 1 year ago by JeeH-K <[email protected]>
setting this action to be triggered manually

github.com/OpenMS/OpenMS - a91644f92b2c998709c76abd87280065e7275d27 authored over 1 year ago by JeeH-K <[email protected]>
Julianus' idea of using git diff and PR

github.com/OpenMS/OpenMS - 2251a5aa74f9c45ca1a3fc52242342ed6a5e10e0 authored over 1 year ago by JeeH-K <[email protected]>
Merge pull request #6733 from cbielow/fix_inherit

Fix inheritance from std::vector

github.com/OpenMS/OpenMS - a5e7a935240238c9d1581aac5729bfff903b2a46 authored over 1 year ago by Chris Bielow <[email protected]>
fixing run typo

github.com/OpenMS/OpenMS - 672aafdb61a678611e8c03f192808f3dfdd8e735 authored over 1 year ago by JeeH-K <[email protected]>
Removing leftover pyopenms doc files & dangling space

github.com/OpenMS/OpenMS - 2b3d2417c0fb11611875378484776db354fa843d authored over 1 year ago by JeeH-K <[email protected]>
Adding new git action for updating OpenMS package numbers

github.com/OpenMS/OpenMS - 312e8eb6d4431844f35ba7ea354db53cb6d1525d authored over 1 year ago by JeeH-K <[email protected]>
Merge branch 'fix_inherit' of https://github.com/cbielow/OpenMS into fix_inherit

github.com/OpenMS/OpenMS - 71b0e29099e63cf050b89a2b557b9d47cc681971 authored over 1 year ago by Chris Bielow <[email protected]>
add include for size_t

github.com/OpenMS/OpenMS - 1adbc7f88d9c295a0a4ff75d8b755f1adc5af8ce authored over 1 year ago by Chris Bielow <[email protected]>
[DOC] Use css variables in our own doc stylings (#6731)

* [DOC] Use css variables in our own doc stylings

* [doc] more style fixes in the TOPP tool t...

github.com/OpenMS/OpenMS - 95c82c7efb01052ad4dc71ae0636ac7a0197f379 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into fix_inherit

github.com/OpenMS/OpenMS - 88421d551b0685a1456dc66d091afc7e1004feff authored over 1 year ago by Chris Bielow <[email protected]>
expose underlying member for UniqueIndexer (mostly)

github.com/OpenMS/OpenMS - 3933bd8558f06e94736cb358374423085094bcd4 authored over 1 year ago by Chris Bielow <[email protected]>
better docs

github.com/OpenMS/OpenMS - 7304d7922985da1fc8c28dedd2bc740ced82341c authored over 1 year ago by Chris Bielow <[email protected]>