Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

OpenMS

Make mass spectrometry analysis accessible to anyone
Collective - Host: opensource - https://opencollective.com/openms - Website: https://openms.org - Code: https://github.com/openms

Update update_nightly.yml

github.com/OpenMS/OpenMS - d8ea3ef057d1e4db17974cfb29982c690b7619fd authored 11 months ago by Samuel Wein <[email protected]>
Update update_nightly.yml

github.com/OpenMS/OpenMS - 79ce76a64c60c3fb2b3dc2650fd39b70b0bc2507 authored 11 months ago by Samuel Wein <[email protected]>
Update update_nightly.yml

github.com/OpenMS/OpenMS - b0ab9c4f979c99d627ee61494e31c77d0f76e592 authored 11 months ago by Samuel Wein <[email protected]>
Try to incorporate to packaging

github.com/OpenMS/OpenMS - cb1b459b3f538aaa17d2b9663be351d462329f54 authored 11 months ago by Julianus Pfeuffer <[email protected]>
Update update_nightly.yml testing

github.com/OpenMS/OpenMS - fa7344d6b0d0b7fdc130cb5170b78bb11642c7bf authored 11 months ago by Samuel Wein <[email protected]>
Merge pull request #7350 from OpenMS/poshul-patch-1

Update update_nightly.yml

github.com/OpenMS/OpenMS - adb7c8d2b7ba4f73c8a1effd1d0a69efa373a227 authored 11 months ago by Samuel Wein <[email protected]>
Update update_nightly.yml

github.com/OpenMS/OpenMS - f513f351217c7ad39287a2c335c484ca90b72c76 authored 11 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - 13ca79ab152154ec8a1f7a0ce0dcc84fd983043f authored 11 months ago by Julianus Pfeuffer <[email protected]>
Prefix path not working/not clear. Use qt_dir

github.com/OpenMS/OpenMS - 0c68396df7b8d5cd5932514fcc70a9a3db85ee43 authored 11 months ago by Julianus Pfeuffer <[email protected]>
brew link is broken for qt https://github.com/Homebrew/homebrew-core/issues/8392

github.com/OpenMS/OpenMS - abb4cd8002ffbc5339526e6ad06b8560a10e0565 authored 11 months ago by Julianus Pfeuffer <[email protected]>
Link qt and set came prefix

github.com/OpenMS/OpenMS - 1059d49ff112ee6e1988e52b6c30d9bc8fb490ed authored 11 months ago by Julianus Pfeuffer <[email protected]>
aqtinstall does not support M1/2/Universal

At least Not for qt5

github.com/OpenMS/OpenMS - e21422be06967ac5f4282273230a2e0a4ab2a8a5 authored 11 months ago by Julianus Pfeuffer <[email protected]>
Macos14 has new xcodr 15

github.com/OpenMS/OpenMS - cc8fde18730a2649bff981eca7d6a11e02be8313 authored 11 months ago by Julianus Pfeuffer <[email protected]>
Try macos-14 M1 in CI

github.com/OpenMS/OpenMS - 147388b3a6b64bb548d634ffa8e06a85a8869e84 authored 11 months ago by Julianus Pfeuffer <[email protected]>
Merge pull request #7345 from OpenMS/timosachsenberg-patch-1

Use system libraries for contrib on Mac

github.com/OpenMS/OpenMS - c892bc83b412f79b9de73f590d43ef4abe512d5a authored 11 months ago by Timo Sachsenberg <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - 90925192833c2946a9167eeeee5a7953e5303b93 authored 11 months ago by Timo Sachsenberg <[email protected]>
With system contrib, do not use static. Remove contrib fix

github.com/OpenMS/OpenMS - cdc210487d069533de32325ba963dad308c01b19 authored 11 months ago by Julianus Pfeuffer <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - f9ec9007fd2e528614c2f87bbc772a149c114d94 authored 11 months ago by Timo Sachsenberg <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - 547aeecf2fc476e196bd2f50dfcd07a6d7f0c7fc authored 11 months ago by Timo Sachsenberg <[email protected]>
comment out tag creation of repo's we dont have access to right now

github.com/OpenMS/OpenMS - 7322f57ee40ff4f8aadcfa00d4aa19fdcebd4151 authored 11 months ago by Samuel Wein <[email protected]>
Merge branch 'develop' into release/2.9.1-action

github.com/OpenMS/OpenMS - d3e9c1601506b9f016ee708c6276cd3025bff926 authored 11 months ago by Samuel Wein <[email protected]>
Update update_nightly.yml

github.com/OpenMS/OpenMS - b447ae35250f51dc4d2ca559bc489ce986510199 authored 11 months ago by Samuel Wein <[email protected]>
update GHA action versions for Node 20

github.com/OpenMS/OpenMS - 6856ed89b536de53dba0bf901deebb830ee21aa0 authored 11 months ago by Samuel Wein <[email protected]>
Add code to update website on release.

github.com/OpenMS/OpenMS - c4f36777ddd870d296a855158f0f266157596169 authored 11 months ago by Samuel Wein <[email protected]>
Update package_general.cmake (#7341)

github.com/OpenMS/OpenMS - e9b1e8036dd895b1956b46d282ae472bdfaa691c authored 11 months ago by Timo Sachsenberg <[email protected]>
Bump contrib from `3a9eba4` to `5545518` (#7340)

Bumps [contrib](https://github.com/OpenMS/contrib) from `3a9eba4` to `5545518`.
- [Commits](htt...

github.com/OpenMS/OpenMS - 820f72aca924a2d03fa94dde4dbe51956caec9b3 authored 11 months ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Update dependabot.yml

github.com/OpenMS/OpenMS - 11f3b00dab91220a977f3d959fe75ce703474100 authored 11 months ago by Timo Sachsenberg <[email protected]>
minimal workflow example

github.com/OpenMS/streamlit-template - 9a7ba9b575fcaa7f63c569a8587b920363d2757a authored 11 months ago by axelwalter <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - e6c4a26929bdf2b235fa5c4621e4c73537b70ade authored 11 months ago by Samuel Wein <[email protected]>
[DOC] update clang-format file to match coding conventions; applied on two classes

github.com/OpenMS/OpenMS - 9e9fdf9438c31dc89de393a7833fc52e3afce9e0 authored 11 months ago by Chris Bielow <[email protected]>
Merge pull request #7339 from OpenMS/fix-mac-runner

Fix mac runner brew issues

github.com/OpenMS/OpenMS - 0b1b5373d2aa1e14d18977c584741854a5cb6179 authored 11 months ago by Samuel Wein <[email protected]>
make doxygen code snippets easier to discover for new developers

github.com/OpenMS/OpenMS - 5c1952f342d727fe46ff7156bbdf688f62a4820a authored 11 months ago by Chris Bielow <[email protected]>
Fix mac runner brew issues

This fixes an issue where brew updates packages already present on the runner after we install p...

github.com/OpenMS/OpenMS - 285c7f8b48d15e9a9e1e8dd4fe91572fa104eb35 authored 11 months ago by Samuel Wein <[email protected]>
Merge pull request #23 from OpenMS/dependabot/submodules/umetaflow-gui-1c4867d

Bump umetaflow-gui from `8440fc3` to `1c4867d`

github.com/OpenMS/streamlit-deployment - d9f66dd1e11256b0a6f6e2df6c7a65710369387a authored 11 months ago by axelwalter <[email protected]>
Update openms_ci_matrix_full.yml

force GHA to not update preinstalled packages in brew

github.com/OpenMS/OpenMS - fbe93b15625a27074bfc87b2d4bd04202c57dfbd authored 11 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - 8368f1851bfbdd8d82ab1ec18a95ce1e8936be9f authored 11 months ago by Samuel Wein <[email protected]>
Merge pull request #138 from OpenMS/timosachsenberg-patch-3

update eigen to 3.4.0

github.com/OpenMS/contrib - 554551862ed1000e6b074d35cb887943e81f8606 authored 11 months ago by Timo Sachsenberg <[email protected]>
Update openms_ci_matrix_full.yml

trying to not specify python3 version

github.com/OpenMS/OpenMS - e92bb25faf80c8ff450c4ce60ccb725cb7675929 authored 11 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

fix two more sha issues

github.com/OpenMS/OpenMS - 0d9ffcd39239b14b4fade8d2eb79c43e53d2ad13 authored 11 months ago by Samuel Wein <[email protected]>
Bump umetaflow-gui from `8440fc3` to `1c4867d`

Bumps [umetaflow-gui](https://github.com/axelwalter/umetaflow-gui) from `8440fc3` to `1c4867d`.
...

github.com/OpenMS/streamlit-deployment - db06e2d5eb5ee600c211897fbc29e5c96f62400c authored 11 months ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - 748771bdafe8554a9e91ec44d30726f8b29bb8f3 authored 11 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - 1f1fa4e392ffc1b2aa9bc25ef513c5ecdf767176 authored 11 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - 78ef5d49680d813e0086510b81c24b6425bb4c6c authored 11 months ago by Samuel Wein <[email protected]>
Merge pull request #7334 from OpenMS/poshul-patch-1

Update update_nightly.yml

github.com/OpenMS/OpenMS - cb0ad99bc9a78d5d1beb073c5b7747d9e42e260e authored 11 months ago by Samuel Wein <[email protected]>
Merge branch 'develop' into poshul-patch-1

github.com/OpenMS/OpenMS - a3195baa0949f91766fc4f6e26edf81ea9081be6 authored 11 months ago by Samuel Wein <[email protected]>
Update update_nightly.yml

add description of how to fix nightly ahead of develop

github.com/OpenMS/OpenMS - f3ce46eca19f8a9c833303a18ac0f261a33d4630 authored 11 months ago by Samuel Wein <[email protected]>
fix: installation of examples directory in unnecessary sub-folder (#7337)

github.com/OpenMS/OpenMS - 91648980641c445b0d87e9a632752b074a259641 authored 11 months ago by Radu Suciu <[email protected]>
maybe patches not needed anymore

github.com/OpenMS/contrib - f1d12cdcfff54d15045ec247de77bae3a0ce41c1 authored 11 months ago by Timo Sachsenberg <[email protected]>
update eigen to 3.4.0

github.com/OpenMS/contrib - 779f10cfa832a2863aee9186c473c5a4ad420c45 authored 11 months ago by Timo Sachsenberg <[email protected]>
update docstrings

github.com/OpenMS/streamlit-template - 309727cec3f21dc4c0963934ffb66d693a13fde9 authored 11 months ago by axelwalter <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - c1db93fbb3016b60b08cbe4b5983dce3e8d751d3 authored 11 months ago by Samuel Wein <[email protected]>
default files and error catch

github.com/OpenMS/streamlit-template - 787e667e07df4112193a6c27479a68f7cd7740df authored 11 months ago by axelwalter <[email protected]>
Merge branch 'develop' into poshul-patch-1

github.com/OpenMS/OpenMS - 015e4cc6f39ae9f444c24f2da937ac9fb7cbc689 authored 11 months ago by Samuel Wein <[email protected]>
Merge pull request #7332 from cbielow/more_doc

[DOC] Developer guide cleanup

github.com/OpenMS/OpenMS - 1c07f3cb3a70e5c4796adfcaee3268e782351aac authored 11 months ago by Chris Bielow <[email protected]>
Update doc/doxygen/public/Main.doxygen

Co-authored-by: Timo Sachsenberg <[email protected]>

github.com/OpenMS/OpenMS - 23850c44d90a478042a40746b10619d94cb21b08 authored 11 months ago by Chris Bielow <[email protected]>
Update update_nightly.yml

Don't use external action for pushing, check if Nightly has work not in develop and throw an error.

github.com/OpenMS/OpenMS - d3bd9c6519dd8a4bf008c4d5cadf3b9085d38283 authored 11 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - 2abe0280256e199c2316bcee91292a4fb9b410a3 authored 11 months ago by Samuel Wein <[email protected]>
[DOC] a word on clang-format

github.com/OpenMS/OpenMS - 67788273be97ee1f515b092343ebef11901d6239 authored 11 months ago by Chris Bielow <[email protected]>
[DOC] fix CMake bug, when using Doxygen 1.10, which compares lexicographically less to 1.8.;; using VERSION_LESS to fix

github.com/OpenMS/OpenMS - 66319fb02718fe41d30c46d0c40d87884822956b authored 11 months ago by Chris Bielow <[email protected]>
amend to moving tutorial

github.com/OpenMS/OpenMS - f698e23b0e006d8746dcc78bdca7bfdbc09fb976 authored 11 months ago by Chris Bielow <[email protected]>
[DOC] some refactoring of topics

github.com/OpenMS/OpenMS - 14b36b2b4d2d3fb7cf03479f75f3837f5b9f6ec3 authored 11 months ago by Chris Bielow <[email protected]>
Break out linking as latest

bash chokes on variables that may or may not exist (like inputs.mark_as_latest) refactor the beh...

github.com/OpenMS/OpenMS - 79cbb0cfc69008835fa3b85397f2afb00b1c30b2 authored 11 months ago by Samuel Wein <[email protected]>
fix conditionals for mark_as_latest to only run if we are a workflow_dispatch

github.com/OpenMS/OpenMS - 161b5d39dbdcc941ba36028017f6bda771e1904c authored 11 months ago by Samuel Wein <[email protected]>
Exclude some more dlls from packaging (#7331)

* Update package_general.cmake

* Update cmake/package_general.cmake

github.com/OpenMS/OpenMS - ab566c7b0dd845dcd2e0e7fd1419f1d56bcea208 authored 11 months ago by Timo Sachsenberg <[email protected]>
Update openms_ci_matrix_full.yml

GHA parser utterly fails to determine where if finds a syntax error. Fixed syntax error

github.com/OpenMS/OpenMS - cc2999956068e91db189099388860cdef5d98659 authored 11 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - 6084a296832d50231048320911ec447be1e8a21e authored 11 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

github.com/OpenMS/OpenMS - 41266e09dd8aa65923ad2d1f43201098fbae2546 authored 11 months ago by Samuel Wein <[email protected]>
Update openms_ci_matrix_full.yml

Fix duplicate ID from merge

github.com/OpenMS/OpenMS - fedab2b5a00fa2470f7e54b0f1ccf6fa150717af authored 11 months ago by Samuel Wein <[email protected]>
Merge branch 'develop' into release/2.9.1-action

github.com/OpenMS/OpenMS - d5ad1eb29bc4a8a6acf20d5ed7c38a3c7b8acac8 authored 11 months ago by Samuel Wein <[email protected]>
file upload

github.com/OpenMS/streamlit-template - ee1f0a8025ee3fc1b258bcb73b90fd724f473575 authored 11 months ago by axelwalter <[email protected]>
Bump contrib from `5e42765` to `3a9eba4` (#7330)

Bumps [contrib](https://github.com/OpenMS/contrib) from `5e42765` to `3a9eba4`.
- [Commits](htt...

github.com/OpenMS/OpenMS - 83e71c755049f4c1e4c611f518850a8c5342d90d authored 11 months ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Stop KNIME site building multiple times on linux in GHA (#7329)

* Set KNIME update site to not build on Ubuntu clang++

* Update openms_ci_matrix_full.yml

...

github.com/OpenMS/OpenMS - c71bf632b008aeb285a28bfa6e26ca168c4f1644 authored 11 months ago by Samuel Wein <[email protected]>
[DOC] enable finding the source of OpenMSConfig.h in our buildsystem

github.com/OpenMS/OpenMS - c989bbc24bd15057c04e73a5d3c5e032f6d1166b authored 11 months ago by Chris Bielow <[email protected]>
cleanup of 3.1 and 3.2

github.com/OpenMS/OpenMS-docs - e569a8fcbc3b3fe9e2238140eac948f6b40e4cc3 authored 11 months ago by Samuel Wein <[email protected]>
[DOC] update user FAQ

github.com/OpenMS/OpenMS - e26b24b68a0b6e5efe61339ddbc6b9d5a151163f authored 11 months ago by Chris Bielow <[email protected]>
Merge pull request #136 from radusuciu/master

Optimize Dockerfile

github.com/OpenMS/contrib - 3a9eba4e45bc18e1e9954f96e9e59f32c9e9b123 authored 11 months ago by Timo Sachsenberg <[email protected]>
Merge branch 'more_doc' of https://github.com/cbielow/OpenMS into more_doc

github.com/OpenMS/OpenMS - 2c14b0d0bea0fc60a0a364a5609a3d289d9c591f authored 11 months ago by Chris Bielow <[email protected]>
[DOC] rename doxygen files for better structure; move OpenMS developer tutorial to common place; removed 'known dev bugs' since its very outdated.

github.com/OpenMS/OpenMS - 45cb7b7a8746eed8ecf019752762579ac5ca0d1f authored 11 months ago by Chris Bielow <[email protected]>
Merge pull request #7327 from OpenMS/timosachsenberg-patch-1

Use private key in nightly action to be able to trigger other workflow

github.com/OpenMS/OpenMS - aa8bba258640874a472f2b6758b771824610dc04 authored 11 months ago by Timo Sachsenberg <[email protected]>
Update update_nightly.yml

github.com/OpenMS/OpenMS - bf6906785dc5358e5e5f2b99abbe7a14401f333d authored 11 months ago by Timo Sachsenberg <[email protected]>
Cleanup

github.com/OpenMS/OpenMS-docs - 5bb77360afda4030cfd2ad56815f8b2c700f2628 authored 11 months ago by Samuel Wein <[email protected]>
workflow with sirius

github.com/OpenMS/streamlit-template - 70fa27b426bfb2f18e6e38b27bc80c21202d66b9 authored 11 months ago by axelwalter <[email protected]>
split workflow in separate modules

github.com/OpenMS/streamlit-template - 116cd6bb66ebc5e26b9448eed1de22ccdcf94757 authored 11 months ago by axelwalter <[email protected]>
reorder metanode tutorial. update procedure for column type assignment and add image to show how

github.com/OpenMS/OpenMS-docs - 3917e3c1d976c9e898030cebac84990a34ef4f41 authored 11 months ago by Samuel Wein <[email protected]>
fix completely wrong section about fileconversion and replace with fileFilter demo. Add images

github.com/OpenMS/OpenMS-docs - 9f22c3e32b073c0d61349afcbb59056190626ebd authored 11 months ago by Samuel Wein <[email protected]>
PNG ify updated simple workflows

github.com/OpenMS/OpenMS-docs - 147f4981391bbfca4fb7834fb26f6564e9367c51 authored 11 months ago by Samuel Wein <[email protected]>
Update minimal workflow

github.com/OpenMS/OpenMS-docs - 58891e28e7d06f289ccdd670d32143e16eaa2d83 authored 11 months ago by Samuel Wein <[email protected]>
update name of input file node to File Importer

github.com/OpenMS/OpenMS-docs - 0252023c30e56e2dfa7a3a08e1da4a144765b4b7 authored 11 months ago by Samuel Wein <[email protected]>
remove ref to old KNIME, add description of where OpenMS thirdparty nodes are

github.com/OpenMS/OpenMS-docs - f4862035d99b8d5785e3c8449712c0be71aab93c authored 11 months ago by Samuel Wein <[email protected]>
add instructions to install genericknimenodes

github.com/OpenMS/OpenMS-docs - 7036f6f4cbf932b5ba066023fa544473f2a8eac1 authored 11 months ago by Samuel Wein <[email protected]>
Merge pull request #7325 from OpenMS/timosachsenberg-patch-1

fix nightly

github.com/OpenMS/OpenMS - 47433c4a7eca05ab1f13fa72990e9006d8134f38 authored 11 months ago by Timo Sachsenberg <[email protected]>
fix nightly

github.com/OpenMS/OpenMS - 9e36b63a9c9efefe75586b52bafb20124948c9c9 authored 11 months ago by Timo Sachsenberg <[email protected]>
fixes to tutorial

github.com/OpenMS/OpenMS-docs - da3615b51871e204c2b46555abfe7e3baf80de6b authored 11 months ago by Samuel Wein <[email protected]>
Merge pull request #7324 from cbielow/more_doc

[DOC] developer documentation update (C++17 etc)

github.com/OpenMS/OpenMS - fb896212d7e906e2be549d5cbae1835a0cc244fb authored 11 months ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into more_doc

github.com/OpenMS/OpenMS - daa12078914aef3b0ae68c6379985b98873527c8 authored 11 months ago by Chris Bielow <[email protected]>
added hub.knime.com to lycheeignore, something about their security policy prevents lychee from loading.

github.com/OpenMS/OpenMS-docs - 23780f65d1e4fd0e0c2068098f8b49c65cd25b95 authored 11 months ago by Samuel Wein <[email protected]>
remove embedding of knime hub page that wasn't allowed by csp

github.com/OpenMS/OpenMS-docs - 0b898c496929e5559044de97b1a6d517cab10e14 authored 11 months ago by Samuel Wein <[email protected]>
remove unnecessary params to website

github.com/OpenMS/OpenMS-docs - 96bcb45c29b42bc61fe10be1ef38b3fe5a7f19fe authored 11 months ago by Samuel Wein <[email protected]>
fix broken external links

github.com/OpenMS/OpenMS-docs - d8455b4c3bcca3ce5d476abb7a4a78ad9088ffa2 authored 11 months ago by Samuel Wein <[email protected]>
added figure to show how to switch back to classic knime interface and instructions on how to do so

github.com/OpenMS/OpenMS-docs - bbabd13a47b91bde6048cb3b76b2151f85ee9c9d authored 11 months ago by Samuel Wein <[email protected]>