Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

OpenMS

Make mass spectrometry analysis accessible to anyone
Collective - Host: opensource - https://opencollective.com/openms - Website: https://openms.org - Code: https://github.com/openms

fix unsused assignements

github.com/OpenMS/OpenMS - 3c529698079f9b9c11bdb5a8d299b33e2abc0e2c authored over 1 year ago by Chris Bielow <[email protected]>
fix usused assignments (cppcheck)

github.com/OpenMS/OpenMS - 38b49f904e1bbb3549865bd07e31580ba42b2e5d authored over 1 year ago by Chris Bielow <[email protected]>
fix Prefix ++/-- operators should be preferred for non-primitive types.

github.com/OpenMS/OpenMS - a7cc3178941635394bf33038441db3bea144956b authored over 1 year ago by Chris Bielow <[email protected]>
fix bug

github.com/OpenMS/OpenMS - 55e3b266108f8fd743adcaacd988ea8d8b3c55cf authored over 1 year ago by Chris Bielow <[email protected]>
fix cppcheck

github.com/OpenMS/OpenMS - dc8cada0a479425e6fc0a78d641d73fb789280e6 authored over 1 year ago by Chris Bielow <[email protected]>
fix ccpcheck (useStl)

github.com/OpenMS/OpenMS - b733f02caf323a15d637b1dc6373f86be8041c28 authored over 1 year ago by Chris Bielow <[email protected]>
fix cppcheck

github.com/OpenMS/OpenMS - 13e1494f31ccd2f0897d699d6cc4720dd4fe5e21 authored over 1 year ago by Chris Bielow <[email protected]>
fix cppcheck

github.com/OpenMS/OpenMS - e04eb2ce2e0422c8af45a0cbc519290804f8ea0e authored over 1 year ago by Chris Bielow <[email protected]>
fix multiple cppcheck warnings

github.com/OpenMS/OpenMS - b6ccc4d21c6f5c5aa6417a26762bd85696241fea authored over 1 year ago by Chris Bielow <[email protected]>
fix cppcheck

github.com/OpenMS/OpenMS - c4b3f88e9e6a58d4436f2a5d63bef94ac53ebf36 authored over 1 year ago by Chris Bielow <[email protected]>
fix cpp check warning

github.com/OpenMS/OpenMS - ad2d27e2a6a743bc239eecdcaa45b4864b2c13ab authored over 1 year ago by Chris Bielow <[email protected]>
cpp warning fix

github.com/OpenMS/OpenMS - fa4365a2f0117134b5dc42f7f04253a1b123cf7d authored over 1 year ago by Chris Bielow <[email protected]>
Local variable 'sum' shadows outer function [shadowFunction]

github.com/OpenMS/OpenMS - 5796f852e09af27e741543282876aab378cd63af authored over 1 year ago by Chris Bielow <[email protected]>
Local variable 'sum' shadows outer function [shadowFunction]

github.com/OpenMS/OpenMS - 2938a8d2610192984dedaff02226746c37152c27 authored over 1 year ago by Chris Bielow <[email protected]>
Local variable 'sum' shadows outer function [shadowFunction]

github.com/OpenMS/OpenMS - 4257006ced498c59f2d2eec893a7c34d70cc93f5 authored over 1 year ago by Chris Bielow <[email protected]>
avoid 'style: Local variable 'mean' shadows outer function [shadowFunction]'

github.com/OpenMS/OpenMS - 9ef5dc06dfea5ba6d72dfcb841214b53166c43fd authored over 1 year ago by Chris Bielow <[email protected]>
Merge pull request #6837 from cbielow/fix_dragExternal

TOPPView: Fix drag external

github.com/OpenMS/OpenMS - f94017e5fbd2d102ab96230229b77cdee30922f6 authored over 1 year ago by Chris Bielow <[email protected]>
use a QTimer to finish the dragEvent and avoid blocking the external source (e.g. Explorer) when loading the file in TOPPView

github.com/OpenMS/OpenMS - cefdb89dbf4e6657cc0c342e9d010ddd3be5719b authored over 1 year ago by Chris Bielow <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into fix_dragExternal

github.com/OpenMS/OpenMS - d5d49df7ee6363526b8aefbd82700f484c0c539e authored over 1 year ago by Chris Bielow <[email protected]>
Revert "use QueuedConnection (i.e. no direct invocation of loading files before finishing the dropEvent) for drag'n'drop from external sources"

This reverts commit 9e0c3550635420bfd610d8173a9c600fed05527b.

github.com/OpenMS/OpenMS - fabf2beba7d8a1699f4a8f91b4b03b8c156eba52 authored over 1 year ago by Chris Bielow <[email protected]>
use QueuedConnection (i.e. no direct invocation of loading files before finishing the dropEvent) for drag'n'drop from external sources

github.com/OpenMS/OpenMS - 9e0c3550635420bfd610d8173a9c600fed05527b authored over 1 year ago by Chris Bielow <[email protected]>
pin file reader (#6824)

* wip

* more entries

* nop

* Update PercolatorInfile.cpp

* add modification parsing ...

github.com/OpenMS/OpenMS - 52809bd12e8e2a8db41f81ca1dfb20362bfff1ae authored over 1 year ago by Timo Sachsenberg <[email protected]>
update to version 3.0.0

github.com/OpenMS/OpenMS-docs - 89221bf3650814f9a652810c9b0d8848a9160e20 authored over 1 year ago by Chris Bielow <[email protected]>
Bump src/pyOpenMS/pyopenms-docs from `19d3537` to `4e49d49` (#6836)

Bumps [src/pyOpenMS/pyopenms-docs](https://github.com/OpenMS/pyopenms-docs) from `19d3537` to `4...

github.com/OpenMS/OpenMS - 79977f78afcfd483e4afafe503467ce487028f04 authored over 1 year ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Merge remote-tracking branch 'origin/main' into main

# Conflicts:
# content/en/config.yaml
# content/en/news.md

github.com/OpenMS/OpenMS-website - cd0be995e869c79dd172f82b4e24480c730e8177 authored over 1 year ago by matteopilz <[email protected]>
changed installation link to match docs restructure PR

github.com/OpenMS/OpenMS-website - ce5f1fc621f0043cca6ee7898d7faa20510837ee authored over 1 year ago by matteopilz <[email protected]>
Fix some code blocks (#380)

* Fix some code blocks

* fix corner case of nested codeblock

github.com/OpenMS/pyopenms-docs - 4e49d49ff17b5d56d10f419f94139c0805977a5b authored over 1 year ago by Julianus Pfeuffer <[email protected]>
fix gaussFilter's wrong ppm width (#6830)

* fix wrong PPM computation (used 10e-6 which is 10^-5 !!!!)

* modernize tests a bit

* upd...

github.com/OpenMS/OpenMS - 1e08e9f53a1f720afac3df9f54de74381c8e430e authored over 1 year ago by Chris Bielow <[email protected]>
Fix spec decoder memory leak (#6831)

* another go at fixing mem leak in ElementDB

* remove memory leak in case of exception

---...

github.com/OpenMS/OpenMS - 7a428a34b566da847b53101fec5ca4d247472c75 authored over 1 year ago by Timo Sachsenberg <[email protected]>
another go at fixing mem leak in ElementDB (#6829)

* another go at fixing mem leak in ElementDB

* Update ElementDB.h

---------

Co-authored...

github.com/OpenMS/OpenMS - efc10dca0f06805e490e33f249cc98a271eb5477 authored over 1 year ago by Chris Bielow <[email protected]>
Update ClassTest.h (#6828)

Print name of unexpected std::exceptions

github.com/OpenMS/OpenMS - b25e2e9a25640bbc43ddcc71ec83c56943a77b0d authored over 1 year ago by Timo Sachsenberg <[email protected]>
make FFID and map alignment more robust to missing IDs (#6825)

* quick fix attempt

* add test to reproduce issue

* don't fail if not enough RT informatio...

github.com/OpenMS/OpenMS - 7e6662f5b1c92418bb902689d3bf6f8ec7ceeaf2 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into Feature/GenericFileLoad

github.com/OpenMS/OpenMS - 993455f1400b33d58f8a5aa206cfbe5a9673dd52 authored over 1 year ago by Samuel Wein <[email protected]>
Update LogConfigHandler.pxd docs

github.com/OpenMS/OpenMS - 0e107d006c5e8e7fc82bf35856de2aa3f2200083 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
add to CHANGELOG

github.com/OpenMS/OpenMS - d77d32c84f1907c39bc4a2a0d4aa644dd94ec244 authored over 1 year ago by Samuel Wein <[email protected]>
Merge branch 'Feature/GenericFileLoad' of ssh://github.com/poshul/OpenMS into Feature/GenericFileLoad

github.com/OpenMS/OpenMS - 3b1de9eca69139e65877b80e2134bd47fb9d782f authored over 1 year ago by Samuel Wein <[email protected]>
Merge branch 'develop' into Feature/GenericFileLoad

github.com/OpenMS/OpenMS - e30ead2e5532fcd9d712a3989347b07e75a4fc5b authored over 1 year ago by Samuel Wein <[email protected]>
remove decoy_prefix for proper decoy annotation of comet pin file (#6823)

github.com/OpenMS/OpenMS - a80f857975ba2b4e35c4fc05c5f99bda58efe167 authored over 1 year ago by Jonas Scheid <[email protected]>
Merge branch 'develop' into Feature/GenericFileLoad

github.com/OpenMS/OpenMS - 6eb12e39aa45f0709f3985c9723082db59c77f03 authored over 1 year ago by Samuel Wein <[email protected]>
[fix] fixed memory leaks in RibonucleotideDB class (#6821)

github.com/OpenMS/OpenMS - 8f57309eed12ce66f27ad2be7094de576894b743 authored over 1 year ago by Samuel Wein <[email protected]>
fix ASAN in ElementsDB (#6820)

* fix ASAN

* Update src/openms/source/CHEMISTRY/ElementDB.cpp

---------

Co-authored-by:...

github.com/OpenMS/OpenMS - 3f8d264db7758d5d7e27074d9c553d6e2adab37b authored over 1 year ago by Timo Sachsenberg <[email protected]>
change workspaces dir name

github.com/OpenMS/streamlit-template - 9f7ce7a86bccc78738fd32cf6530890449f652b8 authored over 1 year ago by axelwalter <[email protected]>
fix file loading in view tab

github.com/OpenMS/streamlit-template - 6de9b2e604c82305fee78405331ca7290e670c99 authored over 1 year ago by axelwalter <[email protected]>
Check for IM when -pasef flag set (#6735)

* Check for IM when -pasef flag set

Errors are not properly caught when dealing with PASEF fi...

github.com/OpenMS/OpenMS - 9d17f4bceac8fc497f24ed6a716a150013dca070 authored over 1 year ago by Joshua Charkow <[email protected]>
delete gh-pages action since we are on netlify now

github.com/OpenMS/OpenMS-website - cb83af5106685f065a6982a2e80b5ff573884ccd authored over 1 year ago by Julianus Pfeuffer <[email protected]>
fix last part of redirect

github.com/OpenMS/OpenMS-website - 81b1cab6644ea9195dd4d359bc7119b8edbad1c8 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
remove useless critical section (since protection is incomplete and very hard to achieve anyways). (#6818)

This fixes the ElementDB test which throws an exception inside the former `omp critical section`...

github.com/OpenMS/OpenMS - 70b7b8f0022619f027aad94342d9d1c07f9a0fac authored over 1 year ago by Chris Bielow <[email protected]>
fix version

github.com/OpenMS/OpenMS-website - 9e4d263c515c291e8524ab9b0d05b438749688c7 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
downgrade node-fetch

github.com/OpenMS/OpenMS-website - 97baff5e5f7f3841d2a45bb9d16fd0551ea81fb7 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
dot

github.com/OpenMS/OpenMS-website - 1a8fa41bfa3e715beed668d8476ebd6a09dd6317 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
with dot???

github.com/OpenMS/OpenMS-website - ce00d88d05803003b2c34110ba49f949180aba65 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
fix package.json?

github.com/OpenMS/OpenMS-website - 3460f35c314094293fe57fd391f46c53a7a78422 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
rename function to add extension js

github.com/OpenMS/OpenMS-website - 9e3de0375db232b37af1b3918eac8a3ced70b14a authored over 1 year ago by Julianus Pfeuffer <[email protected]>
add new js reqs via package.json

github.com/OpenMS/OpenMS-website - 78942ec446bafc7ec9b6dfcaa26ef4fb62259b8d authored over 1 year ago by Julianus Pfeuffer <[email protected]>
wth

github.com/OpenMS/OpenMS-website - c62a4e08f093c17d6338a84fdbdcd8b42e5c7b9a authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Update config.yaml

github.com/OpenMS/OpenMS-website - d5cb1e8534a3550e6777f24404091406516cb876 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
absolute url

github.com/OpenMS/OpenMS-website - 61a020a2d661b1426bfaf9bfa5042b2274f7db00 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Update config.yaml

github.com/OpenMS/OpenMS-website - 162276ab66ef2b48fb3271ba272fd0db7f1923f7 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
remove dot

github.com/OpenMS/OpenMS-website - 3f8c6bd917775e09b0a268635ae5994d47e00f58 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge pull request #83 from OpenMS/jpfeuffer-patch-1

wrong URL for docs

github.com/OpenMS/OpenMS-website - 2a21903c5afb20d44a5c8603cc90bcfd8cd9a4c8 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Update config.yaml

wrong URL for docs

github.com/OpenMS/OpenMS-website - b06b17c9bff1b7b62feb70f9b6218f401b2cf944 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
fix comet tests (#6817)

* fix comet tests

* update IDFileConverter test

* update featuresethelper test

--------...

github.com/OpenMS/OpenMS - a223ae55ce0f5ba44fb094d931f86b4a5f573dba authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #80 from OpenMS/jpfeuffer-patch-1

Try suggestion from netlify: Update _redirects

github.com/OpenMS/OpenMS-website - d2faa73a6a596a7852d5f07fa242c98ef04dc277 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Try hack from netlify community.

github.com/OpenMS/OpenMS-website - 4cc5d2ba9902c2a4a4d7f1aada716b159794bfcc authored over 1 year ago by Julianus Pfeuffer <[email protected]>
only calculate features if not already annotated by comet (#6814)

github.com/OpenMS/OpenMS - e55818d6fbebcd23cad1e92bada66974c6832250 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update news.md

github.com/OpenMS/OpenMS-website - 8a7e5983ce9f76b477e709aed80b1bbe8376f0fe authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Update news.md

github.com/OpenMS/OpenMS-website - df3989474b451d444a8acb9e27e80023b6aedc3d authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Add comet tests with new pepxml output (#6815)

github.com/OpenMS/OpenMS - e338fec3447ab4fda42a47c99b8e5591b619b6f0 authored over 1 year ago by Jonas Scheid <[email protected]>
parse new comet entries (#6813)

github.com/OpenMS/OpenMS - 935ee660c4b03548bd89c2526c02a19f7f92277e authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #82 from OpenMS/update-publications

Update Publications

github.com/OpenMS/OpenMS-website - ba57813000c12c40e5ee4e83a0289010fb967e71 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Update Publications

github.com/OpenMS/OpenMS-website - 14aef4e508c7ddef3cd2fbd1f2633c4a6b356480 authored over 1 year ago by jpfeuffer <[email protected]>
put back email for ncbi in pub script

github.com/OpenMS/OpenMS-website - 0f251e1f14d6a82de34aa8a9969e89365973e4c3 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge pull request #79 from axelwalter/main

Action to update publications list

github.com/OpenMS/OpenMS-website - 27ac25a49521a0cbb0e6dd367e9598943a9f2db1 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
try making title italic

github.com/OpenMS/OpenMS-website - 96fbcd53a6c784d074356525227ca9a2008db86f authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Update .github/scripts/update-publications.py

github.com/OpenMS/OpenMS-website - 1c5b356fad6482c3ee82860e25ebfb5f3ed96e94 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
[DOC] improved Linux build docs (fixes #6789) (#6812)

* [DOC] improved Linux build docs (fixes #6789)

* [DOC] improved Linux build docs (fixes #6789)

github.com/OpenMS/OpenMS - d3d34b4f631bb24e8df156fef523e23d81ae225d authored over 1 year ago by hendrikweisser <[email protected]>
Adjust cometadapter tests (#6811)

* Adjust cometadapter tests

* Add export_additional_pepxml_scores param for additional search...

github.com/OpenMS/OpenMS - 26d3411b05b6b91bfee3616b5ae4b4997c0f20cf authored over 1 year ago by Jonas Scheid <[email protected]>
enable mass trace quantification median with smoothing (#6803)

github.com/OpenMS/OpenMS - 67c1c68c41c015452903e696173bc8c5c0b938a8 authored over 1 year ago by axelwalter <[email protected]>
Bump contrib from `62f0359` to `1240564` (#6810)

Bumps [contrib](https://github.com/OpenMS/contrib) from `62f0359` to `1240564`.
- [Release note...

github.com/OpenMS/OpenMS - f679698f194834889d4018463f005af71696cee4 authored over 1 year ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bump src/pyOpenMS/pyopenms-docs from `f3264f9` to `19d3537` (#6809)

Bumps [src/pyOpenMS/pyopenms-docs](https://github.com/OpenMS/pyopenms-docs) from `f3264f9` to `1...

github.com/OpenMS/OpenMS - 3f5c6e2eac23e993476011a26fe8343bbad3291f authored over 1 year ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Merge pull request #81 from OpenMS/jpfeuffer-patch-2

add news item about summary of 2022 dev meeting.

github.com/OpenMS/OpenMS-website - 535cca8507db0386a6e3c828a1f31368569a6c08 authored over 1 year ago by Timo Sachsenberg <[email protected]>
insert image

github.com/OpenMS/OpenMS-website - 81442ba2fe9eed06880d68da38551cc388205259 authored over 1 year ago by Timo Sachsenberg <[email protected]>
add dev meeting image

github.com/OpenMS/OpenMS-website - 4cd63a72e6d0048c285ae0da0d224b381ba9140d authored over 1 year ago by Timo Sachsenberg <[email protected]>
add news item about summary of 2022 dev meeting.

github.com/OpenMS/OpenMS-website - 29af6f0afdd8631edef588d356881e8df78e9a39 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Update dependabot.yml (#6808)

github.com/OpenMS/OpenMS - 6fcf3d3d6b93ffcd0e5273dfc0606f41c4534bc4 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update dependabot.yml

github.com/OpenMS/OpenMS - df54574b9595ee1f7bf6d034bea997e7c0e47a06 authored over 1 year ago by Timo Sachsenberg <[email protected]>
moved to .github folder

github.com/OpenMS/OpenMS - f370b170ef74b29ff6a52a8f86a1834bcd4899e3 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Create .github/dependabot.yml (#6807)

github.com/OpenMS/OpenMS - 47b855dcc0cddcd2280a43ed9b0cb86b1c06acad authored over 1 year ago by Timo Sachsenberg <[email protected]>
no :splat

github.com/OpenMS/OpenMS-website - ccaf1f796e7ed7fada622369861e8a7a8b5973f7 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Try suggestion from netlify: Update _redirects

github.com/OpenMS/OpenMS-website - f06aebd3df5a604f088e55a55347f93dfd0558a9 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
update thirdparty (#6806)

github.com/OpenMS/OpenMS - 8ddcbaf212c245fe744e5d30347cb2bf8751833a authored over 1 year ago by Timo Sachsenberg <[email protected]>
SVMPrediction (#6805)

github.com/OpenMS/OpenMS - d661898f25aceeb16ba9bd7ba18e4e3bfc6dbbc7 authored over 1 year ago by Timo Sachsenberg <[email protected]>
adapt to docker

github.com/OpenMS/streamlit-template - 069a4d0e08ea7836a69fafe08a899b5f67321e90 authored over 1 year ago by axelwalter <[email protected]>
Update comet executable to 2023 version (#98)

* Update comet executable to 2023 version

* Upload most recent comet version

* remove not ...

github.com/OpenMS/THIRDPARTY - e2152090f83531096ab771b608d561e56325d2c5 authored over 1 year ago by Jonas Scheid <[email protected]>
update workflow example

github.com/OpenMS/streamlit-template - cf2884e300ac57b2668b1f7496fc4082e893b781 authored over 1 year ago by axelwalter <[email protected]>
workspaces outside of repository

github.com/OpenMS/streamlit-template - f26b68681b6c9a37e9d6eb687030c0c76d9dc069 authored over 1 year ago by axelwalter <[email protected]>
Update requirements.txt (#379)

github.com/OpenMS/pyopenms-docs - 19d3537f3f33996eb159fe4a51a011b4c33e1f19 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
changed back to nfcore logo only

github.com/OpenMS/OpenMS-website - 0faaa42a0ff692058c1fb5b08bfb229f9423afa4 authored over 1 year ago by matteopilz <[email protected]>
rework main page

github.com/OpenMS/OpenMS-website - ae91b4f265580112ee7e06f6e148ffee83e14683 authored over 1 year ago by matteopilz <[email protected]>
Merge branch 'develop' into Feature/GenericFileLoad

github.com/OpenMS/OpenMS - d679a4a4936a1fe289048d6f090f9fcc9c44b7d0 authored over 1 year ago by Samuel Wein <[email protected]>