Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

OpenMS

Make mass spectrometry analysis accessible to anyone
Collective - Host: opensource - https://opencollective.com/openms - Website: https://openms.org - Code: https://github.com/openms

Update docs/source/user_guide/reading_raw_ms_data.rst

github.com/OpenMS/pyopenms-docs - ddcc8f4c86e974d01f00f6eb1f922c7eb4289dca authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update docs/source/user_guide/algorithms.rst

Co-authored-by: Julianus Pfeuffer <[email protected]>

github.com/OpenMS/pyopenms-docs - ede975dd62d485f2bad37fd2b11f3ac278c6b5aa authored over 1 year ago by Timo Sachsenberg <[email protected]>
Apply suggestions from code review

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

github.com/OpenMS/pyopenms-docs - 45e51e564a7e13952c5ffcaaf4010eb5298df296 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Explicitly import pyOpenMS in the example python codes

github.com/OpenMS/pyopenms-docs - de7a87ebcf1a419cc9dd45b7f825b2b19730572a authored over 1 year ago by JeeH-K <[email protected]>
Fixed workflow paths and added Win batch script

github.com/OpenMS/Tutorials - d76a38ff956e99db931f04c355c0bdad66470b2d authored over 1 year ago by Eugen Netz <[email protected]>
Merge pull request #6868 from JeeH-K/feature/FLASHDeconvWizard

Adding FLASHDeconvWizard feature

github.com/OpenMS/OpenMS - 800b1f2b539aad3b068c021c277db48b93dbf304 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Addressing Timo's feedbacks on PR#6868

github.com/OpenMS/OpenMS - cf4b634c54a817d97aded5e62a6aafb3cf63a05e authored over 1 year ago by JeeH-K <[email protected]>
remove FLASHDeconvGUILock and use WizardGUILock

github.com/OpenMS/OpenMS - ec3276492238de91cb23d0f2874cd82b5a95b870 authored over 1 year ago by JeeH-K <[email protected]>
retrieved FLASHDeconvWizard related files from commit 3d5ebf183c

github.com/OpenMS/OpenMS - 5a77ea1530101a3cbf4fd342a65965744e28b6a1 authored over 1 year ago by JeeH-K <[email protected]>
fixed encoding

github.com/OpenMS/OpenMS - f2d7752e6f374159f74ec95090799416a89f0c8f authored over 1 year ago by Moritz Aubermann <[email protected]>
make sure mzML files session state item exists

github.com/OpenMS/streamlit-template - 06cd0fb20f5e62104cd049d37f98f151a222f9e7 authored over 1 year ago by axelwalter <[email protected]>
Merge pull request #3 from axelwalter/main

Fix in parameter handling and update to raw MS viewer

github.com/OpenMS/streamlit-template - 66eca09740a8bc0681b4fd19fe7a5fdb57b89bca authored over 1 year ago by axelwalter <[email protected]>
tabs in raw data viewer page

github.com/OpenMS/streamlit-template - 75cc1b3d69d3a092540954bae9835c7a5a934022 authored over 1 year ago by axelwalter <[email protected]>
dont update session state with parameters

- not necessary to modify session state from parameters

github.com/OpenMS/streamlit-template - 5dbc94b193ccc011cb0a9d1d9a77ffe29478a51f authored over 1 year ago by axelwalter <[email protected]>
MetaProSIP: typo (#6862)

github.com/OpenMS/OpenMS - 26292adaec5da7f398205e977db194ba4f3a9f05 authored over 1 year ago by M Bernt <[email protected]>
Merge pull request #99 from enetz/news/retreat_2023_summary

Dev Retreat 2023 Summary

github.com/OpenMS/OpenMS-website - 148f214882b6485d05720b4a2d27048c9e79de5f authored over 1 year ago by Julianus Pfeuffer <[email protected]>
workspaces location

github.com/OpenMS/streamlit-template - 7748baa2d7252a2803605cbcda62d3a1af61389b authored over 1 year ago by axelwalter <[email protected]>
Update chemistry.rst

Bug fixed in all amino acid modification example.

github.com/OpenMS/pyopenms-docs - 96ce56be9e9434d0641cd6f56202bbc792b9cea9 authored over 1 year ago by KyowonJeong <[email protected]>
Update chemistry.rst

Added the part in which all amino acid modifications are stored and retrieved with UniMod accession

github.com/OpenMS/pyopenms-docs - 944a7040505f326748e56a9caa379fe98c1703f7 authored over 1 year ago by KyowonJeong <[email protected]>
fixed two typos

github.com/OpenMS/OpenMS-website - 4de3aba79d08b42211468619cd202fc2b1ea4c19 authored over 1 year ago by Eugen Netz <[email protected]>
Dev Retreat 2023 Summary

github.com/OpenMS/OpenMS-website - 069d7ae1b51b55d00b4e277d216ac2c1ce476c88 authored over 1 year ago by Eugen Netz <[email protected]>
[FEATURE] ProtDigest with indices, simpler ModPepGen (#6854)

* [FEATURE] ProtDigest with indices, simpler ModPepGen

* Review comments and fixes

* fix a...

github.com/OpenMS/OpenMS - eb7ffacdc9f6f779fe45fd885fc5f6a0243142cc authored over 1 year ago by Julianus Pfeuffer <[email protected]>
code runs now, endianness needs to be fixed

github.com/OpenMS/OpenMS - 22a194c4240b07b20ee6571b848b54642bc8c73f authored over 1 year ago by Moritz Aubermann <[email protected]>
Update README.md

github.com/OpenMS/streamlit-template - b5169ba5ca036f165e8c4af89ff10de93d76ee2f authored over 1 year ago by axelwalter <[email protected]>
Update README.md

github.com/OpenMS/streamlit-template - 7de693b52d2ee6ad5e4ad39adc4a02ca827a78f3 authored over 1 year ago by axelwalter <[email protected]>
add README

github.com/OpenMS/streamlit-template - c0091e390135d4e8b7970054380ee6d4a49a425c authored over 1 year ago by axelwalter <[email protected]>
add example workflow

github.com/OpenMS/streamlit-template - 2af20307195e415939fade846f0fd74c0423c3ee authored over 1 year ago by axelwalter <[email protected]>
add docstrings

github.com/OpenMS/streamlit-template - 2c9b54bee9048962f7ff3ca2a58cba1f9147e371 authored over 1 year ago by axelwalter <[email protected]>
added back changes removed in the revert

as basis for fixing the remaining issues

github.com/OpenMS/pyopenms-docs - 9a8ec167dbd4d94eecedb029fc3dd66e9f28f343 authored over 1 year ago by Timo Sachsenberg <[email protected]>
save only params from default params

github.com/OpenMS/streamlit-template - b5eb182ff4aea4c9073f5da5149a54421ca9eae5 authored over 1 year ago by axelwalter <[email protected]>
dont always show mzML remove/info section

github.com/OpenMS/streamlit-template - 2f5681af237f76d704e305c4c1c0c0d935f1e213 authored over 1 year ago by axelwalter <[email protected]>
handle parameters via json file

github.com/OpenMS/streamlit-template - 249b1666005739b0557c79acee36c67f202ffe1b authored over 1 year ago by axelwalter <[email protected]>
align buttons

github.com/OpenMS/streamlit-template - e47dcdd19555255a23226b248e49999a7a2d9046 authored over 1 year ago by axelwalter <[email protected]>
update template

github.com/OpenMS/streamlit-template - fb83a13d2d09d26c713f93c91c9b53e00d760524 authored over 1 year ago by axelwalter <[email protected]>
Merge pull request #23 from eseiler/patch-9

Update seqan_versions.txt

github.com/OpenMS/usage_plots - c3526c49b3effa76fbc2fb0a4b420196d98a50c4 authored over 1 year ago by Svenja Mehringer <[email protected]>
Update seqan_versions.txt

github.com/OpenMS/usage_plots - a9ffa04db0bf059fa838fd1cbd736a50017f3c34 authored over 1 year ago by Enrico Seiler <[email protected]>
Merge pull request #98 from axelwalter/fix-publications-url

Fix link to publications

github.com/OpenMS/OpenMS-website - 0a47ab09e7e16a9ab559c891698556695901c794 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
fix pubmed link

github.com/OpenMS/OpenMS-website - 48a1e654d1347b4d5744d83c28cf8703e6a144a3 authored over 1 year ago by axelwalter <[email protected]>
Merge branch 'master' of https://github.com/OpenMS/Tutorials

github.com/OpenMS/Tutorials - 810f6d470ace9c56f84e01064ef610de0f54ad35 authored over 1 year ago by Eugen Netz <[email protected]>
Updated workflow parameters and IO paths

github.com/OpenMS/Tutorials - ae7a76b177a8c330241c83da86ab5722cf2ce901 authored over 1 year ago by Eugen Netz <[email protected]>
Revert "Update peptides_proteins.rst" (#392)

github.com/OpenMS/pyopenms-docs - 837bd75af0c0c2ce20e6adcd3fdb8205487ea1fc authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge pull request #391 from OpenMS/Ayesha-Feroz-patch-2

Update peptides_proteins.rst

github.com/OpenMS/pyopenms-docs - c4b520d65e47207c58fba401f15b13fb8da52c65 authored over 1 year ago by Ayesha-Feroz <[email protected]>
Update docs/source/user_guide/peptides_proteins.rst

github.com/OpenMS/pyopenms-docs - 7f42d4e0f015792bc6698e071c684cc5a67317b1 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Update docs/source/user_guide/peptides_proteins.rst

github.com/OpenMS/pyopenms-docs - ee29a8df97fe2974a6f6fc108f623bd6dee51be8 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Apply suggestions from code linting

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

github.com/OpenMS/pyopenms-docs - 32154f956e93a72e5b06c32722796b88454e723b authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Update peptides_proteins.rst

github.com/OpenMS/pyopenms-docs - db4eaaeff749a246c728ab25104053307f545d66 authored over 1 year ago by Ayesha-Feroz <[email protected]>
Update peptides_proteins.rst

github.com/OpenMS/pyopenms-docs - 39748b802d8d71bf6a052071b380afc3f99e107f authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #389 from matteopilz/docs_request_template

Update documentation issue or request template

github.com/OpenMS/pyopenms-docs - a149d5004f7e527b4dc724b69d004d942d6f448f authored over 1 year ago by Matteo Pilz <[email protected]>
documentation issue or request template

github.com/OpenMS/pyopenms-docs - 967cf6cb758c44a1a3f4c1d8140c933007d49b5a authored over 1 year ago by matteopilz <[email protected]>
Merge branch 'develop' of https://github.com/42layerToiltepaper/OpenMS into develop

rumprobieren

github.com/OpenMS/OpenMS - 0dd830d24a9963856f7cf23eff7ad64773a54dc8 authored over 1 year ago by Moritz Aubermann <[email protected]>
fixes in make file and failed attempt to make our code work

github.com/OpenMS/OpenMS - 0e93b60b148758abbdbf82307f3641843488b44a authored over 1 year ago by Moritz Aubermann <[email protected]>
repair

github.com/OpenMS/OpenMS - 9b84bec22b4f72b8ecf2f95eee9627fd50295a56 authored over 1 year ago by Moritz Aubermann <[email protected]>
modify cmake file and note down what needs to be changed partially

github.com/OpenMS/OpenMS - 6a23386947c33ac790dd61c9d672d5b4091ce03d authored over 1 year ago by Moritz Aubermann <[email protected]>
include thirdparty simde library

github.com/OpenMS/OpenMS - 2f072dea18c7f0e86d7596a5acc7bdf2210d2673 authored over 1 year ago by Moritz Aubermann <[email protected]>
Delete duplicate workflow

github.com/OpenMS/Tutorials - af1556b86423bc8df7d5c05502ac7f7eb5457ef4 authored over 1 year ago by Eugen Netz <[email protected]>
Cleaned up duplicate workflows

github.com/OpenMS/Tutorials - 7a11e2bd4e799daa7227d85900ef1a942112c987 authored over 1 year ago by Eugen Netz <[email protected]>
Updated workflows to new OpenMS plugin structure

KNIME version: 4.7.1
OpenMS plugin version: 3.0.0.202305031152 (nightly)

Used the new File I...

github.com/OpenMS/Tutorials - ea10b90b798c05e9c447800776e511e2f274d59b authored over 1 year ago by Eugen Netz <[email protected]>
Update style_ini.css

github.com/OpenMS/OpenMS - 183363254a9b6b4f66dfa2cf0712f6133cd26bfa authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Simply selectversion.js and allow selection on different domains

github.com/OpenMS/OpenMS - 0c12349221c37a419177f4342c25eda9fcdecb03 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
[DOCS] add version selector

github.com/OpenMS/OpenMS - 27ae821b1e163f18d44668dedba6b335fc6a47e0 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
improve DecoyDatabase doc (#6844)

* improve DecoyDatabase doc

the tool does not shuffle/reverse the sequence
but only the pept...

github.com/OpenMS/OpenMS - e0ac492dc89ae6eecb3c404d1c8e993bc052a8f1 authored over 1 year ago by M Bernt <[email protected]>
Clean up so files after building on manylinux (#6843)

* .so file cleanup

* .so file cleanup

* .so file cleanup

* .so file cleanup

* .so fi...

github.com/OpenMS/OpenMS - 06dbf1827fa5ca6df79f6f279f716c7d5b29e60a authored over 1 year ago by Matteo Pilz <[email protected]>
Merge pull request #94 from OpenMS/timosachsenberg-patch-1

Fix categories in contributors

github.com/OpenMS/OpenMS-website - b91bd1ea8839665c2c1373cc08c5f83e4534aea2 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update code-of-conduct.html

github.com/OpenMS/OpenMS-website - a37bc6c74903c788545bc52646f10bc6bcd285df authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #96 from OpenMS/fix_gen_config

make config static and remove config script

github.com/OpenMS/OpenMS-website - ded99e500469453be14123c723036aa51c8b7eee authored over 1 year ago by Timo Sachsenberg <[email protected]>
also remove from doc

github.com/OpenMS/OpenMS-website - 5077488c534389b4c907f0ac4e5619ff5930afc9 authored over 1 year ago by Timo Sachsenberg <[email protected]>
make config static and remove config script

github.com/OpenMS/OpenMS-website - 75da63f4d8329074909299bfc944e978bd572d10 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update code-of-conduct.html

github.com/OpenMS/OpenMS-website - c5ebd06ac36cf69633f76688864a1a80f0f9d764 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #93 from matteopilz/main

[Fix] Incorrect Community Footer Link

github.com/OpenMS/OpenMS-website - 7df250ef50d3f312f1ce6e2ff18168b94360aa0d authored over 1 year ago by Julianus Pfeuffer <[email protected]>
also for coc

github.com/OpenMS/OpenMS-website - eb7a214a0defaeb362f78365a59e553e42428f7d authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update executive-team.html

github.com/OpenMS/OpenMS-website - 953057d4fffd0e95d65bb40135f1c61f3a3585c4 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge branch 'OpenMS:main' into main

github.com/OpenMS/OpenMS-website - 0d7f040889ac322f31c976a75142b00cbf6eaf03 authored over 1 year ago by Matteo Pilz <[email protected]>
changed footer community link

github.com/OpenMS/OpenMS-website - 48ff9d71f1ff302808554a789aadabd412677f0a authored over 1 year ago by matteopilz <[email protected]>
Merge pull request #66 from matteopilz/main

General Remarks

github.com/OpenMS/OpenMS-website - 25fcf80a81aa2647dea12e82bc7842b79d26bdc4 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6839 from cbielow/cpp_check

Cpp check fixes

github.com/OpenMS/OpenMS - a96aae42d46ecfac09e5cbc41141ae5d412d53cc authored over 1 year ago by Chris Bielow <[email protected]>
Large restructure of docs (#198)

* Huge restructure of the docs

* More restructure

* fix piwik script

* delete old insta...

github.com/OpenMS/OpenMS-docs - db3e774f4c231cac1d87b2119a26eec3afb8bf19 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
css fixes

github.com/OpenMS/OpenMS-website - 797031eef2e552fecdff47cbc2f2dd6c5e662dec authored over 1 year ago by Julianus Pfeuffer <[email protected]>
removed tutorial from & installation page

github.com/OpenMS/OpenMS-website - 56077b9ede20b3dc70a8d43d6501269f8171c5ec authored over 1 year ago by matteopilz <[email protected]>
removed tutorial from navigation

github.com/OpenMS/OpenMS-website - 449efebd986497cf33f101678bad2b3a4566f480 authored over 1 year ago by matteopilz <[email protected]>
fix test

github.com/OpenMS/OpenMS - 98e2be5d5e930fe917d866ee2252fdfc26a65c23 authored over 1 year ago by Chris Bielow <[email protected]>
fix missing include

github.com/OpenMS/OpenMS - 569af79e04314df6f9aecd67e5565fbbf2f04df5 authored over 1 year ago by Chris Bielow <[email protected]>
Update postBuild to use or new nightly pyopenms name scheme (#386)

* Update postBuild to use or new nightly pyopenms name scheme

* Update requirements.txt

github.com/OpenMS/pyopenms-docs - b238a663f957cb37c24b77662113c97a7d784c39 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into cpp_check

github.com/OpenMS/OpenMS - 6ee7cfe13e196daaf509a501fda1873adf25dade authored over 1 year ago by Chris Bielow <[email protected]>
fix compile error

github.com/OpenMS/OpenMS - 2831b2b090423b4e1d12c3b1e2426479ca1e5d6d authored over 1 year ago by Chris Bielow <[email protected]>
fix nb generation

github.com/OpenMS/pyopenms-docs - d5bb33b4607b012796984523570a965b89ecdd6f authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Update generate_ipynb.sh

github.com/OpenMS/pyopenms-docs - d43c75c318d3f0a891f3ddc29953105d36c24b7d authored over 1 year ago by Julianus Pfeuffer <[email protected]>
modify icon bar (#385)

github.com/OpenMS/pyopenms-docs - b489b4b159fd1c20a7de8764d1b2f56a720cd1d6 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
text for userguide subpage and uncollapse toc (#384)

github.com/OpenMS/pyopenms-docs - 68e14452a66562fcc33fb179d7df1a5288eafb93 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
fix some filepaths after pydata restructure

github.com/OpenMS/pyopenms-docs - d949356c4a403dc823beb4df914df0d0c0d366d2 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Update admonitionfilter.py

github.com/OpenMS/pyopenms-docs - 8fe4c51b72274d5f0123b2dc2d8652a9bd1a8f3d authored over 1 year ago by Julianus Pfeuffer <[email protected]>
comment fixes update

github.com/OpenMS/OpenMS-website - a3fca9130fb5ef899a8d71210a358352b7a588c8 authored over 1 year ago by matteopilz <[email protected]>
Update content/en/config.yaml

github.com/OpenMS/OpenMS-website - dcd1e030447355d9a663da833a7b0e8957bb18e2 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Apply suggestions from code review

Co-authored-by: Timo Sachsenberg <[email protected]>
Co-authored-by: Julianus Pf...

github.com/OpenMS/OpenMS-website - a769ba94ab329bb63fb66548b9a2e458f4d58d4f authored over 1 year ago by Matteo Pilz <[email protected]>
Bump src/pyOpenMS/pyopenms-docs from `4e49d49` to `a583c73` (#6840)

Bumps [src/pyOpenMS/pyopenms-docs](https://github.com/OpenMS/pyopenms-docs) from `4e49d49` to `a...

github.com/OpenMS/OpenMS - bb2d894855aa3e4380d94f7c4c01b853238ee462 authored over 1 year ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Try pandoc 3.x for generating ipynbs (#381)

* Try pandoc 3.x for generating ipynbs

* also update test-pr.yaml

* generate notebooks rec...

github.com/OpenMS/pyopenms-docs - a583c73b0dad03f7e651a0bea92a0f140c9006fe authored over 1 year ago by Julianus Pfeuffer <[email protected]>
[FEATURE] First try with pydata theme (#354)

* [FEATURE] First try with pydata theme

* Update requirements.txt

* stash

* fix untrack...

github.com/OpenMS/pyopenms-docs - 4628e0b3573a80805c1fdd48c482a07ac666f5c8 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
fix cppcheck warnings

github.com/OpenMS/OpenMS - 2e5a852ea95df71f9f2acb2673f6212498492415 authored over 1 year ago by Chris Bielow <[email protected]>
fix unused init

github.com/OpenMS/OpenMS - 7632b1db37f1bcdc3c614201f77132accd56010d authored over 1 year ago by Chris Bielow <[email protected]>
fix usused init

github.com/OpenMS/OpenMS - 2477f084668ba88cf15932997f1341767280f2d9 authored over 1 year ago by Chris Bielow <[email protected]>
fix usused init

github.com/OpenMS/OpenMS - 088a20ab9695cbcb71531db06673d7e0a1bf3971 authored over 1 year ago by Chris Bielow <[email protected]>