Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

OpenMS

Make mass spectrometry analysis accessible to anyone
Collective - Host: opensource - https://opencollective.com/openms - Website: https://openms.org - Code: https://github.com/openms

delete all

github.com/OpenMS/OpenMS - 70716092c5f68edec898f1e1045c8308330e7f2e authored over 1 year ago by Julianus Pfeuffer <[email protected]>
delete

github.com/OpenMS/OpenMS - e27069c74409a974de845cd38eebb06c17e11ae1 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
compiler

github.com/OpenMS/OpenMS - 90e5fc688b06bd0e5a9910ee4b106eb1436b5d97 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
copmpiler

github.com/OpenMS/OpenMS - bdb314c30a184ca632fb7eccf515939c3765fa85 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
submodules

github.com/OpenMS/OpenMS - 9471bbf29ff01921a82c322cbbfdf81bf0ab7f25 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
contrib

github.com/OpenMS/OpenMS - d9974a8c45b5456f3847b3d99fad93f3102eb7b9 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
path

github.com/OpenMS/OpenMS - 99b86a7c29b8490b51eb16229ee67baae574fc67 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
steps

github.com/OpenMS/OpenMS - dda71a4537bb65c5d250da7aef8ac9fd359dcac1 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
steps

github.com/OpenMS/OpenMS - e152c305666d441ae3b6b324e95d26cca59430d0 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
checkout

github.com/OpenMS/OpenMS - 5f095c1b6c1d9e0aeca31c7ff26d10015e914e7a authored over 1 year ago by Julianus Pfeuffer <[email protected]>
agent

github.com/OpenMS/OpenMS - 45bf9f0773ed110ad21d8cfba714fbbe1ef330c6 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
agent

github.com/OpenMS/OpenMS - 8e3c499db73a82cde83e1ad479cce1afe4e9f68a authored over 1 year ago by Julianus Pfeuffer <[email protected]>
agent

github.com/OpenMS/OpenMS - e1c90403efcb761431c9f16dee9a858b5e9e1fc3 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
[pyopenms] add jenkinsfile for silicon build

github.com/OpenMS/OpenMS - 0b532508cc227ed6976424640e4a131dfd2645a0 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
[fix][pyopenms] adhoc sign libs that are copied into wheel (#6904)

github.com/OpenMS/OpenMS - 591d50edb9cfceab534655406f855b71aff601a4 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Stable version - all scoring functions fixed. Ready to do DL

github.com/OpenMS/OpenMS - feb8ba7d8b5c9db3352808a631f53786dc99d90a authored over 1 year ago by KyowonJeong <[email protected]>
fix error related to empty spectra in bruker files (#6897) (#6898)

Co-authored-by: timosachsenberg <[email protected]>

github.com/OpenMS/OpenMS - bbee91221397f4214fdbe2955222015b5609354d authored over 1 year ago by Timo Sachsenberg <[email protected]>
fix error related to empty spectra in bruker files (#6897)

Co-authored-by: timosachsenberg <[email protected]>

github.com/OpenMS/OpenMS - 42ced88371fb297da9e88141c97867184fe13462 authored over 1 year ago by Timo Sachsenberg <[email protected]>
added glossary references

github.com/OpenMS/pyopenms-docs - db7568a1470118d6a74c268a4078477c8f358397 authored over 1 year ago by matteopilz <[email protected]>
comments

github.com/OpenMS/pyopenms-docs - 3aa80124318922e2004f567b6ddbb1032352ba56 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
small change to py domain pandoc filter

github.com/OpenMS/pyopenms-docs - 178b2412e56f372d3a1200201bc47de4ca54d46a authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge remote-tracking branch 'origin/develop' into release/3.0.0

github.com/OpenMS/OpenMS - 46d136421365ad901ed56553a44325d68ef31380 authored over 1 year ago by Timo Sachsenberg <[email protected]>
proper container name

github.com/OpenMS/OpenMS - 02f6044cfa9ec60f7aa39c01ce1046debf4cf409 authored over 1 year ago by Timo Sachsenberg <[email protected]>
push release contrib container

github.com/OpenMS/OpenMS - f53caf5dac1926dc062fb3954642308af4e38720 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update containerdeploy.yml (#6895)

github.com/OpenMS/OpenMS - dd5ffb2152a6144598dfdcbc9f9468b98d86001a authored over 1 year ago by Timo Sachsenberg <[email protected]>
change context

github.com/OpenMS/OpenMS - d9fb0faa55859d1fb2658cea8e174d554d3bf266 authored over 1 year ago by Timo Sachsenberg <[email protected]>
change context

github.com/OpenMS/OpenMS - fd87ba43914ddbfe1cff020ddc0691d033000a1a authored over 1 year ago by Timo Sachsenberg <[email protected]>
change context

github.com/OpenMS/OpenMS - 7ec9b45b1c3fa9991866bf5075410097b6226251 authored over 1 year ago by Timo Sachsenberg <[email protected]>
change context

github.com/OpenMS/OpenMS - 44246f043eaf27f24b9c1ad4d9d8337e8f56ed81 authored over 1 year ago by Timo Sachsenberg <[email protected]>
change context

github.com/OpenMS/OpenMS - 1190e3f2fad37b602db2140498beb9a5b19e2473 authored over 1 year ago by Timo Sachsenberg <[email protected]>
change context

github.com/OpenMS/OpenMS - a354e2e104c08ebe34e0c2f172b36bcbf4853494 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge remote-tracking branch 'origin' into release/3.0.0

github.com/OpenMS/OpenMS - 60f9ed0abce4c56830aec923306d693a439818cb authored over 1 year ago by Timo Sachsenberg <[email protected]>
change context

github.com/OpenMS/OpenMS - d9e3cf86d56ee214e16646d2970f1e78923e63aa authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update containerdeploy.yml

github.com/OpenMS/OpenMS - a93a19cb9fa1e7a212ba61ce33cc3ceedcb2b680 authored over 1 year ago by Timo Sachsenberg <[email protected]>
build contrib container from SHA of submodule (#6894)

github.com/OpenMS/OpenMS - b69650187f5aa5444555ffc4e55fd5f369cdb3b5 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Bump src/pyOpenMS/pyopenms-docs from `fd4ceca` to `8c1f161` (#6891)

Bumps [src/pyOpenMS/pyopenms-docs](https://github.com/OpenMS/pyopenms-docs) from `fd4ceca` to `8...

github.com/OpenMS/OpenMS - eed26794eb6e37cf10fedf99c20da72d0986d2a8 authored over 1 year ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
some missin includes for newer boost versions, more vcpkg fixes

github.com/OpenMS/OpenMS - 5f0b471c002919605bb0cf64cc1979206a0cab5a authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Mac test failure fix

github.com/OpenMS/OpenMS - 4fde58086887b32d8519812076fa147d15589a56 authored over 1 year ago by KyowonJeong <[email protected]>
Windows test failure fix

github.com/OpenMS/OpenMS - 35c042c0eaa953afb3b6425d7e86e691706c3194 authored over 1 year ago by KyowonJeong <[email protected]>
Last touch for ASMS2023 tutorial.

github.com/OpenMS/OpenMS - cc595c4d95901ed1faab6873fcc1667a508c5021 authored over 1 year ago by KyowonJeong <[email protected]>
Merge pull request #6889 from cbielow/fix_sse

Honor MissedCleavages in SimpleSearchEngine

github.com/OpenMS/OpenMS - 2e08c07c5ac16817011e5095efad1497387ad839 authored over 1 year ago by Chris Bielow <[email protected]>
FLASHDeconvDevelop branch merge ready.

github.com/OpenMS/OpenMS - afe2ce4edb2b917ae6d5f5fbb2231da32944a8fb authored over 1 year ago by KyowonJeong <[email protected]>
fix some warnings

github.com/OpenMS/OpenMS - 77928671f8f838ec97fc67a536b1c71a06c45c88 authored over 1 year ago by Chris Bielow <[email protected]>
minor optimization

github.com/OpenMS/OpenMS - 242c87d7685808af0f8d71b59eecb3881231818e authored over 1 year ago by Chris Bielow <[email protected]>
fixes #6888

github.com/OpenMS/OpenMS - 054324c9bafdeaff2b6bf59c0025216beb6e6ea5 authored over 1 year ago by Chris Bielow <[email protected]>
Merge pull request #6876 from SGSSGene/fix/gcc13

Fix gcc13 error and warnings

github.com/OpenMS/OpenMS - 486453ba208baf28639cc25163ac9c37fb987eb1 authored over 1 year ago by Chris Bielow <[email protected]>
Merge pull request #399 from matteopilz/ipynb_links

Convert References to html Links for ipynb

github.com/OpenMS/pyopenms-docs - 8c1f16113f36b5de98001fef2f39ea75f984d07f authored over 1 year ago by Matteo Pilz <[email protected]>
updated function docstring

github.com/OpenMS/pyopenms-docs - 1156fede57e33cae5ca38d6a1077ad16174e1d28 authored over 1 year ago by matteopilz <[email protected]>
Merge remote-tracking branch 'origin/ipynb_links' into ipynb_links

github.com/OpenMS/pyopenms-docs - 36dbc2cfb9889b461787363fed1c3a7fb50ecfc7 authored over 1 year ago by matteopilz <[email protected]>
differentiate between main & submodule

github.com/OpenMS/pyopenms-docs - 86b7dcee3fc8cc7e14a42586fa10364d9bc5b4b2 authored over 1 year ago by matteopilz <[email protected]>
PeakGroup SNR estimation more optimized .

github.com/OpenMS/OpenMS - 22b228f9c949c44b79f7a23b03f951cc1f41a614 authored over 1 year ago by KyowonJeong <[email protected]>
Merge pull request #103 from JeeH-K/fix_flashdeconv_link

fixing the link to the FLASHDeconv installer file

github.com/OpenMS/OpenMS-website - 72b32f94c32b6b0d2d4159aff30dd2174302c03b authored over 1 year ago by Julianus Pfeuffer <[email protected]>
fixing the link to the installer file

github.com/OpenMS/OpenMS-website - 40d6a533422d398a12344f377cdd7fa820723095 authored over 1 year ago by JeeH-K <[email protected]>
patch: running clang format on touched files

github.com/OpenMS/OpenMS - 314ae50c2260cece76456dbec2e4852c0901a909 authored over 1 year ago by Simon Gene Gottlieb <[email protected]>
fix: remove virtual declarations from assignment operators

These virtual doesn't do any thing. The inherited classes have their own
declaration of the assi...

github.com/OpenMS/OpenMS - a0d5517d6662520868206dce1802fabfcebaa3a8 authored over 1 year ago by Simon Gene Gottlieb <[email protected]>
fix: adding missing header for gcc13

github.com/OpenMS/OpenMS - 10b8a8301bb033fa1299eb372f4038a0d962961c authored over 1 year ago by Simon Gene Gottlieb <[email protected]>
patch: remove deprecated std::iterator

github.com/OpenMS/OpenMS - 59d3f2e341478cafb5db7366a3c9627b7328537a authored over 1 year ago by Simon Gene Gottlieb <[email protected]>
patch: replacing the 'requires' function with 'requirements' since 'requires' is a key word in c++20

github.com/OpenMS/OpenMS - ec01689d0645586695f8f2860b2b82165201a413 authored over 1 year ago by Simon Gene Gottlieb <[email protected]>
patch: replace deprecated 'not1' with 'not_fn'

github.com/OpenMS/OpenMS - 8f909a47222af6ea9623353d2c880da92cf4f82b authored over 1 year ago by Simon Gene Gottlieb <[email protected]>
PeakGroup SNR reimplemented + Julianus comments addressed

github.com/OpenMS/OpenMS - babcd11ff0a2dafea4e9378a944c570215bb2d95 authored over 1 year ago by KyowonJeong <[email protected]>
Merge branch 'OpenMS:master' into ipynb_links

github.com/OpenMS/pyopenms-docs - 6e46f419c272cfd845f37267befd551cf521fab9 authored over 1 year ago by Matteo Pilz <[email protected]>
Added reference links conversion & changed simple-example & advanced-example links in wrapping workflows

github.com/OpenMS/pyopenms-docs - 5192fb0913e838cdfcfdabf35d80c51eaf8e7193 authored over 1 year ago by matteopilz <[email protected]>
Better logging in RibonucleotideDB.cpp

Added DEBUG level output to show which Custom_RNA_modifications and Modomics files we are using....

github.com/OpenMS/OpenMS - 4cd8b5bf29b60e41af5ed5d282d48f5a82ab267e authored over 1 year ago by Samuel Wein <[email protected]>
removed white space

github.com/OpenMS/OpenMS - d5831b645d2a563a6efbfcbbf8ef952f8fca0ddf authored over 1 year ago by JeeH-K <[email protected]>
DeconvolvedSpectrum_test.cpp test failure fixed

github.com/OpenMS/OpenMS - 2b827520c15c3dbe5488a13e9b05c02844611230 authored over 1 year ago by KyowonJeong <[email protected]>
Unnecessary harmonic removal removed. Some of magic numbers have removed or/and adjusted.

github.com/OpenMS/OpenMS - 8f950cbfb01757041c6174267692986b5e014577 authored over 1 year ago by KyowonJeong <[email protected]>
SNR calculation renewed. For signal, first sum intensity then square. For noise, group peaks possibly from the same molecule and sum their intensity before square. Far better to remove harmonic yet to retain signal

github.com/OpenMS/OpenMS - 4cf6e06bf2ddbbb34c32f5c547f2606cf0324bdf authored over 1 year ago by KyowonJeong <[email protected]>
update FLASHDeconv to the newest version (#6869)

* FLASHDeconv branch is merged (using manual diff). Window test is necessary yet.

* Scan numb...

github.com/OpenMS/OpenMS - bc87405780eb75c98a3e1b5de946d374b45598fc authored over 1 year ago by JihyungKim <[email protected]>
Support for consensus maps in .oms (SQLite) files (#6816)

* [FIX] fix handling of IDs (new format) in FeatureMap assignment operator

* [NOP] whitespace...

github.com/OpenMS/OpenMS - a497b9971130ec5644d825ad24f89c6f876fec73 authored over 1 year ago by hendrikweisser <[email protected]>
added decoder functionality

github.com/OpenMS/OpenMS - 14625723d4c31cf884d98689f1597cc8d0a9def9 authored over 1 year ago by Moritz Aubermann <[email protected]>
Add files via upload

github.com/OpenMS/OpenMS-website - f57b2616353b19c542878742668744e9dead44c6 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Add files via upload

github.com/OpenMS/images - ed4862028beded28c5e05198a8517185883ce42b authored over 1 year ago by Timo Sachsenberg <[email protected]>
Change one of the application name as FLASHQuant (#100)

* Change the name of the tool as FLASHQuant

* fixing the image file name

github.com/OpenMS/OpenMS-website - ddbe9306a4b6f57b64e1225d314892c17cd3a328 authored over 1 year ago by JihyungKim <[email protected]>
Fixed OpenSwathWorkflow node settings

github.com/OpenMS/Tutorials - 2eff627c4d552b9dea1644db19b31b388d38b940 authored over 1 year ago by Eugen Netz <[email protected]>
[FEATURE] Make CMake work with coin from brew. Complete the vcpkg recipe. Fix some warnings.

github.com/OpenMS/OpenMS - 13cb7184d4cbd38741d6443ac7fcc1eaf12b54e2 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
[FIX] Param merging with empty subsections (#6873)

* [FIX] Param merging with empty subsections

* add test

* check empty?

github.com/OpenMS/OpenMS - 74f76cec5178eae044646b10b2a63c2705aa9e7d authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Update run_tests.cmake

escape semicolons

github.com/OpenMS/build-scripts - 21fcbc3246995dc112974db58fa411ace041b80a authored over 1 year ago by Samuel Wein <[email protected]>
fix recent brew path changes

github.com/OpenMS/build-scripts - 51efa96bd711bb4eaceee6c3962e5001817ef65a authored over 1 year ago by Julianus Pfeuffer <[email protected]>
removed old files

github.com/OpenMS/images - cd12d9e94c101d1643f987d39d7276efb843b9bb authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #5 from OpenMS/timosachsenberg-patch-1-1

Add files via upload

github.com/OpenMS/images - f875bd13d8f2e2a874d15932b5c1ed22f546e779 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Add files via upload

github.com/OpenMS/images - c5371969d2ebf1a645081f517938c5c9d955c817 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #4 from OpenMS/timosachsenberg-patch-1

small fix

github.com/OpenMS/images - 587a95754c47ce61ff2eab7c76a26250013e819b authored over 1 year ago by Timo Sachsenberg <[email protected]>
small fix

github.com/OpenMS/images - 8805388869ad295545fd040614fae8f283af22fe authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update installBuildTools.sh

github.com/OpenMS/build-scripts - 2ce8983555fff33b20524894f677a13fe2a59731 authored over 1 year ago by Samuel Wein <[email protected]>
Update installBuildTools.sh

github.com/OpenMS/build-scripts - b871cec19454d0f6fb5875df2c358b0ce4aec1a9 authored over 1 year ago by Samuel Wein <[email protected]>
Update installBuildTools.sh

Fix handling of brew in non-default location

github.com/OpenMS/build-scripts - ace6e46712bb17ba8f6348a681edbc23c979e165 authored over 1 year ago by Samuel Wein <[email protected]>
Add files via upload

github.com/OpenMS/images - 54c067b3ce6d74f2ce1d87b2152466894883ce5a authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #3 from OpenMS/timosachsenberg-patch-1

Add new pyopenms logo files

github.com/OpenMS/images - b488c9cfa3bc5988bb8f0cfbf7e2147605f92247 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Add files via upload

github.com/OpenMS/images - bc1626a87b71b632aa7aa0cb000292d7aefa4f6c authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update scoring_spectra_hyperscore.rst (#394)

* Update scoring_spectra_hyperscore.rst

* Update scoring_spectra_hyperscore.rst

* Update s...

github.com/OpenMS/pyopenms-docs - 4d0b9a5339b8f810b8a9cd3071ec8878af86a2dc authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #6872 from OpenMS/dependabot/submodules/src/pyOpenMS/pyopenms-docs-fd4ceca

Bump src/pyOpenMS/pyopenms-docs from `a583c73` to `fd4ceca`

github.com/OpenMS/OpenMS - d3de013d4acbf64cf5e7acd4331207df95c4a49a authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Bump src/pyOpenMS/pyopenms-docs from `a583c73` to `fd4ceca`

Bumps [src/pyOpenMS/pyopenms-docs](https://github.com/OpenMS/pyopenms-docs) from `a583c73` to `f...

github.com/OpenMS/OpenMS - b56f1250dc6919a9f333aa2cb06c33c9aee267af authored over 1 year ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Merge pull request #390 from OpenMS/modified_peptide_generator_doc

Update peptides_proteins.rst

github.com/OpenMS/pyopenms-docs - fd4ceca023c637b433a29d56a5003938dacfdf08 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update peptides_proteins.rst

github.com/OpenMS/pyopenms-docs - 441aee0c6ce12d7106b14cfd06959ee1c5e4ce5c authored over 1 year ago by Ayesha-Feroz <[email protected]>
reverted changes in test, that was used as workbench

github.com/OpenMS/OpenMS - 96eac291060a48241233c76adbd93ea1078b43ec authored over 1 year ago by Moritz Aubermann <[email protected]>
coding conventions, comments, last fixes

github.com/OpenMS/OpenMS - 3b72d702d6b388a73b7175c8cbf1ea8a23e8de67 authored over 1 year ago by Moritz Aubermann <[email protected]>
fixed up compile flags to make simde work

github.com/OpenMS/OpenMS - 63aa6759a3ca06bbaf910fb39f46f8b22e496915 authored over 1 year ago by Moritz Aubermann <[email protected]>
Merge pull request #396 from OpenMS/explicit_importing

Explicitly import pyOpenMS in the example python codes

github.com/OpenMS/pyopenms-docs - 1dba25c76a379b37be431c7b1767892bcbf891ac authored over 1 year ago by Timo Sachsenberg <[email protected]>
broken link fixed

github.com/OpenMS/pyopenms-docs - 15c0e44b9cc977c5c6dee93f376abcb1c811ab45 authored over 1 year ago by JeeH-K <[email protected]>
adding missing oms

github.com/OpenMS/pyopenms-docs - 6b5e9854cde08a7e2d9c3d2cfa87db32846f79b3 authored over 1 year ago by JeeH-K <[email protected]>