Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

OpenMS

Make mass spectrometry analysis accessible to anyone
Collective - Host: opensource - https://opencollective.com/openms - Website: https://openms.org - Code: https://github.com/openms

minor cleanup

github.com/OpenMS/OpenMS - eca336ae22a5671b41fef1c8bd9c1811fd247970 authored over 1 year ago by Chris Bielow <[email protected]>
allow external JSON target / update nlohmann::json to proper lib

github.com/OpenMS/OpenMS - aabdf33421a71fcd97285545396adc3ee9f88182 authored over 1 year ago by Chris Bielow <[email protected]>
fix license year

github.com/OpenMS/OpenMS - b84a7f80dc9b9f820dd33d138d35fe7190ebec6c authored over 1 year ago by Chris Bielow <[email protected]>
Merge pull request #6926 from OpenMS/update_year_number

[ByGitAction] Updated year number in the header of files

github.com/OpenMS/OpenMS - 947b5b966299300049cb6b9f9239b2462a244480 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update CTestCustom.cmake

Decrease max errors reported and increase the size of the output for each

github.com/OpenMS/build-scripts - c722107b0064694af307600f0b8fb113378af2b4 authored over 1 year ago by Samuel Wein <[email protected]>
Updated year number

github.com/OpenMS/OpenMS - 3ecd0cee7cb39c1ca3dffda202f7e886cce8c299 authored over 1 year ago by timosachsenberg <[email protected]>
Merge pull request #6925 from OpenMS/timosachsenberg-patch-1

Update update_year_number.yml

github.com/OpenMS/OpenMS - ee23b2604fb84ab67338950408c59ad9c7b9bf87 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update update_year_number.yml

github.com/OpenMS/OpenMS - 5a5d0bd8d532fe644fca0b935c07f6e3bce7bdbe authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #6924 from OpenMS/timosachsenberg-patch-1

Update update_year_number.yml

github.com/OpenMS/OpenMS - 6c7966c960127b3ade4c4b88a621569d5933986d authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update update_year_number.yml

github.com/OpenMS/OpenMS - 7237383d9646bb8f45dbd61315aa57a25c72c8ba authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #6921 from OpenMS/run-update-year-number-once-per-year

Update update_year_number.yml

github.com/OpenMS/OpenMS - 6c018267ab603c2d0c1bc07bf1445fd58c5f5796 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #6920 from OpenMS/jpfeuffer-patch-1

ignore Cython warnings for py 3.8

github.com/OpenMS/OpenMS - 549e12f2c57476c6d262be12076d31a303f4f032 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update update_year_number.yml

github.com/OpenMS/OpenMS - dabda190b93494b5cefbca33a73565dd210bc356 authored over 1 year ago by Timo Sachsenberg <[email protected]>
ignore Cython warnings for py 3.8

github.com/OpenMS/OpenMS - 6578de567abc4b43cd075eca3366d6116a60f5d3 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge remote-tracking branch 'origin/develop' into release/3.0.0

github.com/OpenMS/OpenMS - cb71bec5a844fe31d598e9b63a40149b22c34807 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #6883 from JeeH-K/FLASHDeconvFix

[Fix] bug fixing on FLASHDeconv

github.com/OpenMS/OpenMS - 9464bc169aa9b105cbe054810d8018576f3680a0 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #6917 from OpenMS/timosachsenberg-patch-1

remove unicode character from description in MSFraggerAdapter.cpp

github.com/OpenMS/OpenMS - b31e9f0eca079df806c193ff19b110b9a488e776 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update MSFraggerAdapter.cpp

github.com/OpenMS/OpenMS - 9071a64bb3978190d72a6cf7e68eb3253a9035d9 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into FLASHDeconvFix

github.com/OpenMS/OpenMS - 7cc744177fb8d61da41bbb0f0c59394476ee8044 authored over 1 year ago by JihyungKim <[email protected]>
A few minor bugs fixed. And functions have been refactored. A bit of documentation added + one possible bug with static varialbe fixed...

github.com/OpenMS/OpenMS - 6ca7d144d62ebf2c639f552c64a3fc9e67f06345 authored over 1 year ago by KyowonJeong <[email protected]>
A few minor bugs fixed. And functions have been refactored. A bit of documentation added.

github.com/OpenMS/OpenMS - 53375234c0b6a302a8a19a09f2dbbe96aac535f5 authored over 1 year ago by KyowonJeong <[email protected]>
Merge pull request #6916 from OpenMS/fixMRMfloatingpt

Update MRMTransitionGroupPicker.h

github.com/OpenMS/OpenMS - ec2ff8e81b50152c21eecf8402dd199ed338041f authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #6914 from OpenMS/fix_floatingpoint_IsobaricQuant

Update IsobaricQuantifier.cpp

github.com/OpenMS/OpenMS - fb8a216e51bfd55beeb0c3d42fd9dd070460ec4e authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into release/3.0.0

github.com/OpenMS/OpenMS - 1b75c29fc4d528dd08a69b7d5b7e57d62145764b authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update MS3TMT10Plex_test.consensusXML

github.com/OpenMS/OpenMS - b8be45da410c5703ff00c707678a979b6c3ae7c9 authored over 1 year ago by Samuel Wein <[email protected]>
Update TMTTenPlexMethod_test.consensusXML

github.com/OpenMS/OpenMS - 40bd0ecf5ee9fc74d089bbcf0f6f93bde391334a authored over 1 year ago by Samuel Wein <[email protected]>
Update MS3TMT10Plex_test.consensusXML

Update test

github.com/OpenMS/OpenMS - 3c4b51376f8426192bc7dd7089a25e8738237541 authored over 1 year ago by Samuel Wein <[email protected]>
Update MRMTransitionGroupPicker.h

Accumulate should start from 0.0

github.com/OpenMS/OpenMS - 6cff3e0a162850c9673de54e57c1bf85c3b3a96f authored over 1 year ago by Samuel Wein <[email protected]>
Update MRMTransitionGroupPicker.h

Fixed unintended consequences of cat-keyboard interaction

github.com/OpenMS/OpenMS - bdb6dd479594169c6e7dfd75ceb481144cb7d56f authored over 1 year ago by Samuel Wein <[email protected]>
Update src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h

github.com/OpenMS/OpenMS - cb6b36446c735899631d33d1f7629522cd3049c4 authored over 1 year ago by Timo Sachsenberg <[email protected]>
removed gitpod yml

github.com/OpenMS/streamlit-template - ee3857134615a01e3533f68eb7d2cfb6a36f5171 authored over 1 year ago by timosachsenberg <[email protected]>
Update .gitpod.yml

github.com/OpenMS/streamlit-template - 240c279a0f280c4647e54a5f0b4cab3a6de3e135 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update MRMTransitionGroupPicker.h

Fixes issues where behavior diverges between architectures due to floating poin weirdness

github.com/OpenMS/OpenMS - 715c6b9133a547b683f1764f445e2fbc11922439 authored over 1 year ago by Samuel Wein <[email protected]>
Update IsobaricQuantifier.cpp

Set intensity < 1e-11 to count channel as empty

github.com/OpenMS/OpenMS - eb70ab98bc2c23ef2bfba24fe96236dbd04ac4b5 authored over 1 year ago by Samuel Wein <[email protected]>
Merge pull request #6912 from OpenMS/dependabot/submodules/src/pyOpenMS/pyopenms-docs-577aca4

Bump src/pyOpenMS/pyopenms-docs from `8c1f161` to `577aca4`

github.com/OpenMS/OpenMS - 47474d164bf4425c0c567d35df9daa81ebfa20be authored over 1 year ago by Timo Sachsenberg <[email protected]>
Bump src/pyOpenMS/pyopenms-docs from `8c1f161` to `577aca4`

Bumps [src/pyOpenMS/pyopenms-docs](https://github.com/OpenMS/pyopenms-docs) from `8c1f161` to `5...

github.com/OpenMS/OpenMS - 31713c6e820eda6cd5d6dc8e2349cb8d1551fbda authored over 1 year ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Merge pull request #6911 from OpenMS/develop

update release branch with latest changes

github.com/OpenMS/OpenMS - 6a89e56c08df8b65f98f443df90e60dc51cf8bc5 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update installation.rst

github.com/OpenMS/pyopenms-docs - 577aca40cec7eba1158127e3d42bdd8e1464a7f6 authored over 1 year ago by Arslan-Siraj <[email protected]>
add new-binderIntegration.gif (#403)

github.com/OpenMS/pyopenms-docs - 1f51abceff30ffa58561685d3f437dcabc91a54b authored over 1 year ago by Arslan-Siraj <[email protected]>
Update installation.rst for pyopenms (#401)

simple edit to correct pyopenms nightly intto pyopenms

github.com/OpenMS/pyopenms-docs - 6326886bd21539ae4dd76690cc7eb172aaf6cd47 authored over 1 year ago by KyowonJeong <[email protected]>
Update requirements.txt

github.com/OpenMS/streamlit-template - 018c35728e02cf7e0ec61d7658fbde5f15aad92b authored over 1 year ago by Timo Sachsenberg <[email protected]>
Fix slow string conversion (#6910)

* fix very inefficient string conversion

* remove unused function

github.com/OpenMS/OpenMS - 09ee2053ff28a7c4817d38de8c41eed3c3bbdd74 authored over 1 year ago by Chris Bielow <[email protected]>
Feature - reading parameters via JSON file (#6879)

* fix-test: let us close that CTD stream before checking

* feat: adds parameter import via JS...

github.com/OpenMS/OpenMS - 58b767034c603f6184d3de2e41d296f567f7face authored over 1 year ago by Simon Gene Gottlieb <[email protected]>
minor comments

github.com/OpenMS/streamlit-deployment - b44c0ec0eb2c1c5d34cf19d63a3be4fd8859db9a authored over 1 year ago by Timo Sachsenberg <[email protected]>
update compose file

github.com/OpenMS/streamlit-deployment - 81b8a6d8961f5c083b135ae2342080a2cda595c9 authored over 1 year ago by Timo Sachsenberg <[email protected]>
add file permissions

github.com/OpenMS/streamlit-template - 55ea4b7ff60e9d136a68a6e8066ae971771438d1 authored over 1 year ago by Timo Sachsenberg <[email protected]>
updated example_app submodule

github.com/OpenMS/streamlit-deployment - 584cc089070487659394fab75cf74ddbb4d0bec9 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Dockerfile to create a streamlit server with OpenMS+pyOpenMS (batteries included) (#4)

* initial dockerfile to spawn streamlit instance

* use mamba for faster solve

* add some h...

github.com/OpenMS/streamlit-template - c8b58c5eb1d98a6dca555d0c89fa1517bc1d7bde authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #6909 from cbielow/fix_msg_icon

fix bogus icon message on Linux (where we do not embed icons)

github.com/OpenMS/OpenMS - 734547246965cf00a58edb5efb740efe3078ec39 authored over 1 year ago by Chris Bielow <[email protected]>
Merge pull request #6884 from OpenMS/RDB-logs

Better logging in RibonucleotideDB.cpp

github.com/OpenMS/OpenMS - 81ec3896cc2ed615dff81a57dd57b96499ba85a7 authored over 1 year ago by Chris Bielow <[email protected]>
Update src/openms/source/CHEMISTRY/RibonucleotideDB.cpp

github.com/OpenMS/OpenMS - 862565a22055d07c626370226259472044c6b75b authored over 1 year ago by Chris Bielow <[email protected]>
Update src/openms/source/CHEMISTRY/RibonucleotideDB.cpp

github.com/OpenMS/OpenMS - d883d29977ec3aaf215fc90be44a2741a00992c9 authored over 1 year ago by Chris Bielow <[email protected]>
Update src/openms/source/CHEMISTRY/RibonucleotideDB.cpp

github.com/OpenMS/OpenMS - 948d88b24575c1c82fa3264cf91027b6b4eb6f1d authored over 1 year ago by Chris Bielow <[email protected]>
Merge branch 'develop' into fix_msg_icon

github.com/OpenMS/OpenMS - fadd2ddcecb13de9606e3f6a639788bf75e938c6 authored over 1 year ago by Chris Bielow <[email protected]>
fix bogus icon message on Linux (where we do not embed icons)

github.com/OpenMS/OpenMS - 582f8736427cdf044d63ed1bbb0c80a0a3b86f87 authored over 1 year ago by Chris Bielow <[email protected]>
Merge branch 'develop' into RDB-logs

github.com/OpenMS/OpenMS - 55e81b8eadc34a588aca1cf3ec2bc2099b28d7a7 authored over 1 year ago by Timo Sachsenberg <[email protected]>
A bit of refactoring done. Build version. Windows error fixed3.

github.com/OpenMS/OpenMS - 5c0b3a37e697b3fdd1c26df1d92700c0ce914025 authored over 1 year ago by KyowonJeong <[email protected]>
A bit of refactoring done. Build version. Windows error fixed2.

github.com/OpenMS/OpenMS - 5e4025bd3b0467d71b5f5c393218a5d17659857c authored over 1 year ago by KyowonJeong <[email protected]>
A bit of refactoring done. Build version. Windows error fixed.

github.com/OpenMS/OpenMS - e28b19957e490b774a221578e16c28704a472661 authored over 1 year ago by KyowonJeong <[email protected]>
A bit of refactoring done. Build verions

github.com/OpenMS/OpenMS - 287b7ccd0bead03cf67a6790b741680819836e43 authored over 1 year ago by KyowonJeong <[email protected]>
Negative isotope implemented!!! Now let's go with refactoring.

github.com/OpenMS/OpenMS - 24cf1eb5fc5bc7eebf7adf4a9c662f22923b0965 authored over 1 year ago by KyowonJeong <[email protected]>
Base version. Need to implement negative isotope intensities.

github.com/OpenMS/OpenMS - 867c92d753a6f52d333855d9b3af9b8e178bb8a6 authored over 1 year ago by KyowonJeong <[email protected]>
refactoring FLASHDeconvAlgorithm

github.com/OpenMS/OpenMS - 9fd428411539a84ac956b1ef5b448ff1d3c0922e authored over 1 year ago by KyowonJeong <[email protected]>
Merge pull request #6908 from OpenMS/pyopenmsJenkinsfile

Update pyoms Jenkinsfile such that it checks out into a local branch with the same name

github.com/OpenMS/OpenMS - ca9d22141819aba4ea9ea628dedde6bae0b9509d authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Update Jenkinsfile

github.com/OpenMS/OpenMS - fddf2875452baf4c74b53260dea727dd1dc8f255 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6905 from OpenMS/pyopenmsJenkinsfile

Pyopenms jenkinsfile (for macOS silicon)

github.com/OpenMS/OpenMS - 9e609261b77ded98878fff54dbc9ad76ce6aa0a2 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
forgot to remove

github.com/OpenMS/OpenMS - 6ed117c734f9cf631a20c153f427e6ed83d76675 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
complete release branch

github.com/OpenMS/OpenMS - 95d9a7db8512b58db85678242a3f89ea74c35139 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Dummy for FDR estimation is optimized. Get ready for PR. First we will build this version for release.

github.com/OpenMS/OpenMS - 553652da0605f2973b7dda5cdbe44a6fd9a33431 authored over 1 year ago by KyowonJeong <[email protected]>
conda activate

github.com/OpenMS/OpenMS - c6fa0edcd9d86e2300b547d6301920eff3a22afe authored over 1 year ago by Julianus Pfeuffer <[email protected]>
single quotes

github.com/OpenMS/OpenMS - aa77c1d817766992f188d7dab1cc64a748444a72 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
escape dollar

github.com/OpenMS/OpenMS - 8d09913280cc820d004c4d64f3519087951dacbe authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge pull request #105 from matteopilz/main

Move assets from theme repo to openms website

github.com/OpenMS/OpenMS-website - 18918daa6ae3cbc1c072f16ee941490252d368b6 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
no conda needed for twine. installed with brew now

github.com/OpenMS/OpenMS - 5c2405f01951d1d55828c89facdd41e40624350a authored over 1 year ago by Julianus Pfeuffer <[email protected]>
make similar to GH actions

github.com/OpenMS/OpenMS - bc3454fb9a13f29f01a5149fffc1e0223b0e5468 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
rename typed

github.com/OpenMS/OpenMS-website - 478572142f504812041812170daf8e30381e9102 authored over 1 year ago by matteopilz <[email protected]>
fixed formatting

github.com/OpenMS/OpenMS-website - f206109d801f9daedc28658565c358b21c118b13 authored over 1 year ago by matteopilz <[email protected]>
add gmc.js to conf.py

github.com/OpenMS/OpenMS-docs - e44c06cd22ea0f402e4085ed5c712854b775b4d2 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
nextflow (#200)

* nextflow

* added gmc script

* no end transition

github.com/OpenMS/OpenMS-docs - f3882a2724a83698dcfd032d9135a59b1bd4f3ca authored over 1 year ago by Julianus Pfeuffer <[email protected]>
renamed css files

github.com/OpenMS/OpenMS-website - 8c4a7b45c334959e1875b902ed2a4340f8c8d7e5 authored over 1 year ago by matteopilz <[email protected]>
Merge remote-tracking branch 'origin/main' into main

# Conflicts:
# content/en/keyfeatures/proteomics.md
# themes/scientific-python-hugo-theme

github.com/OpenMS/OpenMS-website - ab7454bf471982e32527dd5e806159731c9a4431 authored over 1 year ago by matteopilz <[email protected]>
removed proteome-and-compound-discoverer-integration & links replaced to docs (#107)

github.com/OpenMS/OpenMS-website - 65aa6ff30c1d25294e4cefe7f9fb039b739849b2 authored over 1 year ago by Matteo Pilz <[email protected]>
fix some py scripts

github.com/OpenMS/OpenMS - d00faa80c10d765b2e6a42a6c2856a8ae85ce36a authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Update Jenkinsfile (#6906)

github.com/OpenMS/OpenMS - 448e3a664376040f787d743f134730ff8a5657f9 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge branch 'main' of https://github.com/matteopilz/openms.de into update-pyopenms-logo

github.com/OpenMS/OpenMS-website - 2911609893440364e0eb1cc92047138a67e83bf7 authored over 1 year ago by matteopilz <[email protected]>
removed redundant css code

github.com/OpenMS/OpenMS-website - 9defdba44dbc020394be6629fb21e8d900faa16d authored over 1 year ago by matteopilz <[email protected]>
Update Jenkinsfile

github.com/OpenMS/OpenMS - 387772df8c03c439f676a46e55b0b7af6233088e authored over 1 year ago by Julianus Pfeuffer <[email protected]>
activate conda again

github.com/OpenMS/OpenMS - d556d9ad77fba277704dfa035801a651d581c373 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge branch 'OpenMS:main' into main

github.com/OpenMS/OpenMS-website - f2228b56592f35e9308fe6a0ed8dc7de4e2fc3b9 authored over 1 year ago by Matteo Pilz <[email protected]>
moved assets to openms.de

github.com/OpenMS/OpenMS-website - 1d536d33cef46211f2f5d7257fad72a87c5c9e41 authored over 1 year ago by matteopilz <[email protected]>
fix error in test

github.com/OpenMS/OpenMS - 7fa49062f81759a6743f2d5de5201c351fa90156 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
creds

github.com/OpenMS/OpenMS - 042a95031e7289220258822c1f4e084f9c291864 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
qt5dir

github.com/OpenMS/OpenMS - 3386c9bb8538898febd438a08ff75a5084b08c18 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
source conda init

github.com/OpenMS/OpenMS - 27166254fc48ec13234438c44f47e24928e96707 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
init?

github.com/OpenMS/OpenMS - ed57898045f49732b8ccf1841c0f50764f8c9a98 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
zsh?

github.com/OpenMS/OpenMS - 28f5a86e15a2b9d8cacb6c4e6b5f78f38235cc0a authored over 1 year ago by Julianus Pfeuffer <[email protected]>
conda

github.com/OpenMS/OpenMS - 4f4a0de988d89db28d90144aa9b06350da8ca761 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
add docker compose

github.com/OpenMS/streamlit-deployment - 67dd68695cc169feaab0c342db03f85227cb4ad3 authored over 1 year ago by Timo Sachsenberg <[email protected]>
update streamlit deployment repo

github.com/OpenMS/streamlit-deployment - 9128fd01e2e5774aa9014c7dea9284ffac18ae6e authored over 1 year ago by Timo Sachsenberg <[email protected]>
steps?

github.com/OpenMS/OpenMS - 17963daff2da5bcaa75eb56f235616833542c008 authored over 1 year ago by Julianus Pfeuffer <[email protected]>