Ecosyste.ms: OpenCollective
An open API service for software projects hosted on Open Collective.
OME
Open Microscopy Environment is a consortium of universities, labs, industry & developers producing open-source software & format standards for bioimaging data
Collective -
Host: opensource -
https://opencollective.com/ome
- Website: https://www.openmicroscopy.org
- Code: https://github.com/ome
github.com/ome/bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
Stars: 381 - Last synced: 20 Dec 2024
github.com/ome/openmicroscopy
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
Stars: 199 - Last synced: 20 Dec 2024
github.com/ome/ome-zarr-py
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
Stars: 151 - Last synced: 19 Dec 2024
github.com/ome/ngff
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
Stars: 117 - Last synced: 19 Dec 2024
github.com/ome/napari-ome-zarr
A napari plugin for zarr backed OME-NGFF images
Stars: 28 - Last synced: 19 Dec 2024
github.com/ome/ansible-role-prometheus-postgres
Prometheus Postgres exporter
Stars: 25 - Last synced: 19 Dec 2024
github.com/ome/ansible-role-cadvisor
cAdvisor container monitoring
Stars: 25 - Last synced: 19 Dec 2024
github.com/ome/docker-example-omero
OMERO Docker compose example
Stars: 24 - Last synced: 19 Dec 2024
github.com/ome/omero-documentation
Sphinx-based documentation for the Open Microscopy Environment
Stars: 22 - Last synced: 20 Dec 2024
github.com/ome/omero-py
Python project containing Ice remoting code for OMERO
Stars: 22 - Last synced: 20 Dec 2024
github.com/ome/omero-iviewer
An OMERO.web app allowing to view images
Stars: 19 - Last synced: 20 Dec 2024
github.com/ome/devspace
Continuous integration tool for OME projects
Stars: 18 - Last synced: 19 Dec 2024
github.com/ome/omero-ms-zarr
Experimental micro-service for implementing the Zarr spec over HTTP
Stars: 17 - Last synced: 19 Dec 2024
github.com/ome/ansible-role-prometheus
Prometheus monitoring server
Stars: 17 - Last synced: 19 Dec 2024
github.com/ome/ome2024-ngff-challenge
Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
Stars: 16 - Last synced: 20 Dec 2024
github.com/ome/omero-figure
An OMERO.web app for creating Figures from images in OMERO
Stars: 15 - Last synced: 20 Dec 2024
github.com/ome/omero-cli-transfer
An OMERO CLI plugin for creating transfer packets between OMERO servers.
Stars: 14 - Last synced: 19 Dec 2024
github.com/ome/bio-formats-examples
Examples of usage of the Bio-Formats API
Stars: 14 - Last synced: 19 Dec 2024
github.com/ome/ome-model
OME model (specification, code generator, implementation)
Stars: 13 - Last synced: 20 Dec 2024
github.com/ome/omero-server-docker
OMERO.server production docker image
Stars: 12 - Last synced: 19 Dec 2024
github.com/ome/omero-deployment-examples
Examples playbooks for installing OMERO with Ansible and Docker
Stars: 11 - Last synced: 19 Dec 2024
github.com/ome/octave-docker
Dockerfile to build an Octave container
Stars: 11 - Last synced: 19 Dec 2024
github.com/ome/ansible-role-postgresql
Install upstream PostgreSQL server. Optionally creates users and databases.
Stars: 11 - Last synced: 19 Dec 2024
github.com/ome/ansible-role-ssl-certificate
Generate SSL certificates
Stars: 11 - Last synced: 19 Dec 2024
github.com/ome/ansible-role-nginx-proxy
Install Nginx for use as a front-end proxy.
Stars: 10 - Last synced: 19 Dec 2024
github.com/ome/shape-editor
Javascript library based on Raphael.js for editing shapes
Stars: 10 - Last synced: 19 Dec 2024
github.com/ome/ome-docker
Docker files for http://github.com/openmicroscopy
Stars: 9 - Last synced: 19 Dec 2024
github.com/ome/bio-formats-documentation
Bio-Formats documentation
Stars: 8 - Last synced: 20 Dec 2024
github.com/ome/omero-metadata
OMERO plugin for metadata manipulation https://www.openmicroscopy.org/omero/
Stars: 7 - Last synced: 19 Dec 2024
github.com/ome/training-scripts
A set of scripts to access, analyse image and metadata from OMERO
Stars: 7 - Last synced: 19 Dec 2024
github.com/ome/omero-insight
Gradle project containing insight java client for OMERO
Stars: 7 - Last synced: 20 Dec 2024
github.com/ome/vsftpd-anonymous-upload-docker
Vsftpd Docker image for anonymous FTP uploads only
Stars: 7 - Last synced: 19 Dec 2024
github.com/ome/omego
OME, Go! Installation and administration tool for OME applications.
Stars: 6 - Last synced: 19 Dec 2024
github.com/ome/ansible-role-network
Set up network interfaces with Ansible
Stars: 6 - Last synced: 19 Dec 2024
github.com/ome/EMBO-Practical-Course-2023
Advanced methods in bioimage analysis
Stars: 6 - Last synced: 19 Dec 2024
github.com/ome/omero-web-docker
OMERO.web production docker image
Stars: 6 - Last synced: 19 Dec 2024
github.com/ome/conda-bioformats2raw
Bio-Formats image file format to raw format converter
Stars: 6 - Last synced: 19 Dec 2024
github.com/ome/ome-ngff-validator
Web page for validating OME-NGFF files
Stars: 5 - Last synced: 19 Dec 2024
github.com/ome/rsync-ssh-docker
Docker image to allow SSH and rsync access to volumes using github keys
Stars: 5 - Last synced: 19 Dec 2024
github.com/ome/ansible-role-mysql-backup
Setup a cron job for regular full Mysql/Mariadb database dumps.
Stars: 5 - Last synced: 19 Dec 2024
github.com/ome/ansible-role-postgresql-backup
Backup PostgreSQL database servers
Stars: 5 - Last synced: 19 Dec 2024
github.com/ome/omero-server
Gradle project containing main server logic for OMERO
Stars: 5 - Last synced: 20 Dec 2024
github.com/ome/spatial-omics-hackathon-2021
See https://forum.image.sc/t/ome-ngff-spatial-omics-hackathon/57337
Stars: 5 - Last synced: 19 Dec 2024
github.com/ome/ansible-role-fluentd
Install Fluentd log collector with Ansible
Stars: 5 - Last synced: 19 Dec 2024
github.com/ome/omero-mapr
An OMERO.web app allowing to browse the data through attributes linked to the image
Stars: 5 - Last synced: 19 Dec 2024
github.com/ome/ansible-role-minio-s3-gateway
Minio S3 gateway with additional restricted users
Stars: 4 - Last synced: 19 Dec 2024
github.com/ome/ome-mdbtools
Java API to handle Microsoft MDB format (Access). Used by Bio-Formats for Zeiss LSM metadata in MDB files.
Stars: 4 - Last synced: 19 Dec 2024
github.com/ome/omero-downloader
An OMERO client for downloading data in bulk from the server.
Stars: 4 - Last synced: 19 Dec 2024
github.com/ome/training-docker
Software carpentry lesson about Docker
Stars: 4 - Last synced: 19 Dec 2024
github.com/ome/prod-playbooks
Playbooks used by the OME team for deploying production services including OMERO
Stars: 4 - Last synced: 19 Dec 2024
github.com/ome/ansible-role-iptables-raw
Ansible module to import iptables_raw library
Stars: 4 - Last synced: 19 Dec 2024
github.com/ome/ome-codecs
OME image compression (coder-decoder implementations)
Stars: 4 - Last synced: 19 Dec 2024
github.com/ome/ansible-role-omero-server
Installs and configures OMERO.server
Stars: 4 - Last synced: 19 Dec 2024
github.com/ome/ome_zarr_test_suite
Test suite of reader and writer implementations
Stars: 4 - Last synced: 19 Dec 2024
github.com/ome/omero-test-infra
Test infrastructure for decoupled repositories
Stars: 3 - Last synced: 19 Dec 2024
github.com/ome/omero-webtest
An OMERO.web app for prototypes and examples
Stars: 3 - Last synced: 19 Dec 2024
github.com/ome/ome-zarr-metadata
ome-zarr extension for parsing metadata
Stars: 3 - Last synced: 19 Dec 2024
github.com/ome/ansible-role-python3-virtualenv
Install Python3 virtualenv dependencies and a wrapper script for the Ansible pip module
Stars: 3 - Last synced: 19 Dec 2024
github.com/ome/omero-javapackager-plugin
Plugin for creating an installable java package (dmg, exe, etc.) using javapackager command line tool
Stars: 2 - Last synced: 19 Dec 2024
github.com/ome/ome-ngff-java
Metadata stubs of the NGFF specification in Java
Stars: 2 - Last synced: 19 Dec 2024
github.com/ome/ome-metakit
Library for reading Metakit database files
Stars: 2 - Last synced: 19 Dec 2024
github.com/ome/omero-prometheus-tools
Utilities for monitoring OMERO with Prometheus
Stars: 2 - Last synced: 19 Dec 2024
github.com/ome/ome-common-java
Java library providing common functionality for all OME Java components
Stars: 2 - Last synced: 19 Dec 2024
github.com/ome/omero-cli-duplicate
OMERO command-line tool for duplicating database objects
Stars: 2 - Last synced: 19 Dec 2024
github.com/ome/ansible-role-openstack-volume-storage
Create and attach a volume to an Openstack instance
Stars: 2 - Last synced: 19 Dec 2024
github.com/ome/cookiecutter-omero-webapp
Cookiecutter to create OMERO.web apps
Stars: 2 - Last synced: 21 Dec 2024
github.com/ome/omero-web-zarr
Implementation of OME-Zarr API with an omero-web app
Stars: 2 - Last synced: 19 Dec 2024
github.com/ome/.github
Community health files for the @OME organization
Stars: 2 - Last synced: 19 Dec 2024
github.com/ome/ansible-role-postgresql-client
Install PostgreSQL clients from the upstream distribution
Stars: 2 - Last synced: 19 Dec 2024
github.com/ome/ansible-role-local-accounts
Create or remove local user accounts.
Stars: 2 - Last synced: 19 Dec 2024