Digital Biomarker Discovery Pipeline commits | Ecosyste.ms: OpenCollective

removed several other package related metadata files

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - ef1df0413f5fefa130ffdd43eff202662c12536b authored about 1 year ago

added the venv folder to gitignore

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - 0846b42dacdf722b1426d099ec248e64580e162d authored about 1 year ago

fixed naming bug in apple watch

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - 3480576b7ad679080be9c957ca909189d7ed6165 authored about 1 year ago

started moving the garmin loading functions to the package codebase, renamed a couple variables

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - 1186ceed2a66338b9ca59095b2c9bba8d96f3835 authored about 1 year ago

finished the data loading example in the notebook

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - c9fbacee029f449eae3036b45593c141b2a43d6d authored about 1 year ago

added example of loading data from garmin directory in notebook

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - d20eaa838d11353fef24d98574a5f1dea7d21d5e authored about 1 year ago

Merge pull request #6 from DigitalBiomarkerDiscoveryPipeline/load-apple-data

Load apple data

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - 224d229a5f15e66a2c9a64edf25e1f5740492fbe authored about 1 year ago

added setup.cfg file, tried to fix github actions

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - b0cbdec5f16888e84f817320c120d6ff00f33d42 authored about 1 year ago

setup max line configuration for pycodestyle

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - 6f3139586ba432c645eef6a671d8163435666749 authored about 1 year ago

fixed formatting issues with black

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - 58ac0b52666f0017aaf07b84905dac1aa53daf9b authored about 1 year ago

re-strctured the workflow notebook. Also moved attributes from AppleWatch to the more general CommercialDevice class

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - e301b9f4deb1e56f789f79505a44cfa9b717e5ac authored about 1 year ago

completed the base loading function for apple watch, moving on to Garmin

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - 1a2eb888c5acf79a34820860cd4a6da7d4bb8140 authored about 1 year ago

dropped unnecessary columns for each of the different health metrics

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - 2455ea4fe7286bff028e01bddff8f39f94bf59f8 authored about 1 year ago

small edit to the test notebook

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - faae8bbe841f7beeaccc2457d3f474816351ec43 authored about 1 year ago

wrote the first version of the apple watch loading function -- need to test

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - c87ac532363bb9a5670bedf8c72841e050dc5d5d authored about 1 year ago

wrote the factory method for parsing XML file and store in attribute

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - 187468b484831aa788a5aac1a783f0fe57b70da2 authored about 1 year ago

added some empty files for example script

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - d889b5575d3e61b79838438241fcb2b551073932 authored about 1 year ago

Merge pull request #5 from DigitalBiomarkerDiscoveryPipeline/garmin_class

Garmin class

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - d5a3f7f79d17c48a420e8e6a77786ee2117d405f authored about 1 year ago

function ready

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - 321caf6e621d26b040f3897bf67924a39d1938d4 authored about 1 year ago

Standardized data structure initial

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - fe356195d37ef7dd86edf85d3e70ef4ce875dfb7 authored about 1 year ago

updated garmin class

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - e047af449bcc2badfe227281db67281d70f411cd authored about 1 year ago

Merge pull request #2 from DigitalBiomarkerDiscoveryPipeline/garmin

Garmin

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - 7338f7429898511b94595c8275e90bae5a4098fc authored over 1 year ago

changes occured when writting Garmin class

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - fbb72dc94e97d955d77ac2c862b1e758c6282e6d authored over 1 year ago

wrote garmin class

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - 9aab34aeda18a429fde950cbdb5b51a1b1d5a98e authored over 1 year ago

Merge pull request #1 from DigitalBiomarkerDiscoveryPipeline/demo

Demo

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - 35ff7fa6500308243715af16d2282da797e8645e authored over 1 year ago

demo purpose

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - eea5ef3fe988551cc38734b22f0478d6988a135c authored over 1 year ago

written get device info function and tests

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - 882b2771fc19d23816eb22cec4dba8480f72a37f authored over 1 year ago

commented out code for demo purposes

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - f530b0e8f59678e5cb1a4ba62ac045a5897d2fbd authored over 1 year ago

corrected pytest_runner settings

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - f7ea64581e18a96af4af3de3fe75cb18a4300bef authored over 1 year ago

setup CICD with Github Actions

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - b1fc2d4a764b79b964d727fc237602727e46f47a authored over 1 year ago

removed the venv folder from git commits

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - eaf7486332e00f41070c76873ad04deee038afcf authored over 1 year ago

added parametrize test case

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - 9a2a24c38c1539d4cabccf29a4ce557b65a256bf authored over 1 year ago

setup the basic configuration for pytest and black

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - c8543ad12cf55f7542f939f549dab56b8ea524b5 authored over 1 year ago

added some basic setup information to the setup script

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - dd8dec2fedcd464fc6bb2d760e82b1ec215976f3 authored over 1 year ago

setup the base project structure

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - 01b4987e851b29b37f02513ae0c0800f1e7d5f1e authored over 1 year ago

Initial commit

github.com/DigitalBiomarkerDiscoveryPipeline/dbdpy - 711b49d47abc18b3433099a25ebe50200ab62799 authored over 1 year ago

Update README.md

github.com/DigitalBiomarkerDiscoveryPipeline/Digital_Health_Data_Repository - 4e849aef6ed6de6d4c9b788697ae660bfc8dd672 authored over 1 year ago

Created using Colaboratory

github.com/DigitalBiomarkerDiscoveryPipeline/Case_Studies - 5dfe14c73882f1349cad81bc4cfb429638a6e489 authored over 1 year ago

Add file for the Plos DH

github.com/DigitalBiomarkerDiscoveryPipeline/Digital_Health_Data_Repository - 170c00909b0bca377c0b741bbf51f49b63d504d8 authored over 1 year ago

Update README.md

adding ECG and sleep for examples

github.com/DigitalBiomarkerDiscoveryPipeline/Case_Studies - 5d1ea3da4ab82b8aecdfa49b5c97d6d7fe436542 authored over 1 year ago

cleaning up directory

moving Brinnae's case studies to main directory & replacing README

github.com/DigitalBiomarkerDiscoveryPipeline/Case_Studies - 6292197e5fa0ef3bc979bebb0f3fb7d79e763b5f authored over 1 year ago

Merge pull request #1 from DigitalBiomarkerDiscoveryPipeline/merge-case-studies

Merge case studies

github.com/DigitalBiomarkerDiscoveryPipeline/Case_Studies - 9505d81cdca8611ed876db2b8059313818eb5c00 authored over 1 year ago

Merge remote-tracking branch 'Education/main' into merge-case-studies

github.com/DigitalBiomarkerDiscoveryPipeline/Case_Studies - 5779b937ab36c43f970754daddb34dc09229c767 authored over 1 year ago

Created using Colaboratory

github.com/DigitalBiomarkerDiscoveryPipeline/Case_Studies - 644509588b0c051fd8a34d33810e01d6723ebe25 authored over 1 year ago

submit csv files

github.com/DigitalBiomarkerDiscoveryPipeline/Pre-process - 51b24e775b40c6a1b75bff5eef684f3615e823d7 authored over 1 year ago

remove the print

github.com/DigitalBiomarkerDiscoveryPipeline/Pre-process - 1d3e35458830a1da977cc6ac350d358c577865d6 authored almost 2 years ago

remove the print

github.com/DigitalBiomarkerDiscoveryPipeline/Pre-process - 9d160ccbe645c7b61934a761ef4576e431c86df4 authored almost 2 years ago

Merge branch 'master' of https://github.com/DigitalBiomarkerDiscoveryPipeline/Pre-process

github.com/DigitalBiomarkerDiscoveryPipeline/Pre-process - ce5c14f8a510e54ac66471e70f45fdc1fece0053 authored almost 2 years ago

update for codebook

github.com/DigitalBiomarkerDiscoveryPipeline/Pre-process - ccb51d94448e004f34c9db03270ef29cf07528b7 authored almost 2 years ago

Update cf.py

matching to Yihang's cf.py

github.com/DigitalBiomarkerDiscoveryPipeline/Pre-process - a1777631c9b1c890bb0377dd52931df6d721908a authored almost 2 years ago

update utils.py with true_align_graph

github.com/DigitalBiomarkerDiscoveryPipeline/Pre-process - f5dce314dc28f4e0026dee1a660f1e9b8be7513a authored almost 2 years ago

Upadte dtw

github.com/DigitalBiomarkerDiscoveryPipeline/Pre-process - aeb4462693a422229d2e7674a2c0df0cb6aa9876 authored almost 2 years ago

Delete README.md

github.com/DigitalBiomarkerDiscoveryPipeline/Case_Studies - 31734b5ec6deb6f4cbd55db9d5372dd534db1091 authored almost 2 years ago

Created using Colaboratory

github.com/DigitalBiomarkerDiscoveryPipeline/Case_Studies - a5fb85b25347d17caa5356fa8b61adea657f75e7 authored almost 2 years ago

Create README.md

github.com/DigitalBiomarkerDiscoveryPipeline/Case_Studies - e6c40a7162eca2f3651bfad78022a1957f6b7a09 authored almost 2 years ago

Created using Colaboratory

github.com/DigitalBiomarkerDiscoveryPipeline/Case_Studies - 9248658fc3d8bd76b1a9912e48f554070451b335 authored almost 2 years ago

Update README.md

github.com/DigitalBiomarkerDiscoveryPipeline/Digital_Health_Data_Repository - df2428077e106f1e2e52c01dacb9a5821c7871bd authored almost 2 years ago

-Updated gitignore

-Updated requirements.txt
-Removed unused imported packages.

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - 490ccb0e8a12411f58f4c650003ae8085e1ff9ae authored about 2 years ago

minor changes before AMIA workshop

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - 1517f0e8c8a65ef0f1e2450567423da1b29a89dc authored about 2 years ago

Update README.md

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - 9301f42a72ee62abeae98c0ca3ab512d2b414373 authored about 2 years ago

Update README.md

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - c972d109100df1132d8d5c41c1caa9fb0934e8c2 authored about 2 years ago

Update README.md

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - ffc2b0a034d4add9925e88f1a4140371d2c025e5 authored about 2 years ago

Create README.md

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - 999ac902e4023b8acd29021fde9f2ee79ca8136d authored about 2 years ago

Adding requirements.txt

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - a7729dbd5a5a8194856cb1250d241ddb844e6d66 authored about 2 years ago

Merge pull request #8 from DigitalBiomarkerDiscoveryPipeline/upload-page

Upload page

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - 2241845479c79f7ee2261450781c6a471fa57b42 authored about 2 years ago

thematic changes to data cleaning page

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - 6fc74fb896148d99bf833305a93c1131bd079f33 authored about 2 years ago

thematic changes to navbar

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - fa867166fbbf144c8ad008f74d7ae62c9715ed9f authored about 2 years ago

updated upload page UI

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - e75aa80e2f158cb899ba6adff18b9e181276d3e8 authored about 2 years ago

Merge pull request #7 from DigitalBiomarkerDiscoveryPipeline/tarek/data-cleaning

Data cleaning page: fix for column name change on save

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - e797fc2860e1f02605c20f3ad4e59b992eb1a0e8 authored about 2 years ago

Data cleaning page: fix for column name change on save

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - 02a03565022fbca3b38ee902aa196446a29226b2 authored about 2 years ago

Merge pull request #6 from DigitalBiomarkerDiscoveryPipeline/tarek/data-cleaning

Fixing data change persistence when moving away from DC page

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - 0c71869236c4af7b3070618a1c7492d0d3766059 authored over 2 years ago

Fixing data change persistence when moving away from and back to data cleaning page.

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - 810337288dba9425be585db820ce9b13167c9e39 authored over 2 years ago

added populational level mean error calculation in eda page

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - 129c28d1fc7bcd8cfaba5bf813574602dd402fa8 authored over 2 years ago

Merge pull request #5 from DigitalBiomarkerDiscoveryPipeline/rework-eda

updated eda to take data from cleaned-data-store, minor updates to th…

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - bd2a4cbc4a300d75d47ded1635b8934f1571a9b3 authored over 2 years ago

updated eda to take data from cleaned-data-store, minor updates to the button themes in data cleaning page

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - fadd7c4b580140f710d8ea35021c09e0a0bc461b authored over 2 years ago

Merge pull request #4 from DigitalBiomarkerDiscoveryPipeline/tarek/data-cleaning

Tarek/data cleaning

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - a1b6182f982083a08167080c9b38efc49b7c7307 authored over 2 years ago

Fully functional data cleaning module

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - e9b99f8eb671e41c26a5fe6ded389a27a8476c46 authored over 2 years ago

Initial commit

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - 2b0e41cae745c634bb51789be6988824a2e6db80 authored over 2 years ago

edited time series person id selection

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - 901964e953d6e4595a623c7f89c864be9cb1ded6 authored over 2 years ago

remove cache file

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - 8ed0db26f0e0bc6070396d2cb73118077ef50017 authored over 2 years ago

added gitignore and removed cache file

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - c5a4d770a45e308147874646c9db708d901c45a8 authored over 2 years ago

error correlation plots added

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - d6b6a6c33fbc46b2165f7c752c92a9ea117bb19e authored over 2 years ago

minor themechange for development purposes

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - cd8aca94d7ba848027a5c8c67e1ae3aebe654d9b authored over 2 years ago

rebased

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - 4dda2ff9715a99dcc2dcf5f72e515117b1fa448f authored over 2 years ago

Merge pull request #3 from DigitalBiomarkerDiscoveryPipeline/eda

Eda

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - 3651d97d9860f1761a5a65b1683172f47d6af992 authored over 2 years ago

rebase with main

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - 95317e448019531e7546cf615971f9d949b01d67 authored over 2 years ago

populated eda page with correlation plots

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - e23683f0e80c070cc4e390d4aa1a9586cecd92c3 authored over 2 years ago

added time series plot

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - ac57528d12c27eb4962affff64138982908f379f authored over 2 years ago

Merge pull request #2 from DigitalBiomarkerDiscoveryPipeline/tarek/styling

Updating nav bar styling

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - e7922fb4aa63c760c8135436b5333a152eab6e0c authored over 2 years ago

Fixing PR

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - e9cc6f18f43d765d5bee8b29589db7a83920bb7a authored over 2 years ago

Adding base navbar styling

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - 2863ce4e6823719ea161ced593fabc2a98abb942 authored over 2 years ago

basic preprocessing functionalities

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - efb7432fb383fb7eaef16255ff3058cefc36a659 authored over 2 years ago

rewired upload logic to take physionet data instead

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - 1dfd3947542c6bf176e83956e081f72c81026d82 authored over 2 years ago

refactored the code for central storage and added routing to processing module

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - e62bafe0bb8f9bd9cf028adba0c369191d24355f authored over 2 years ago

Initial commit, main interface structure and upload functionalities

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP-GUI - ccc64c7d2b646ba512f586fd099d46b4de7d66f6 authored over 2 years ago

Update Box link

github.com/DigitalBiomarkerDiscoveryPipeline/Digital_Health_Data_Repository - 55c100df60303c313cbda515ef889219550bce3f authored over 2 years ago

Merge pull request #2 from anbreton/master

Fixed a dbdp.org 404 error on ReadMe.md

github.com/DigitalBiomarkerDiscoveryPipeline/DBDP - 098d0336fa2454e2a094bcc05d6cf132c95a00b9 authored over 2 years ago

Update README.md

github.com/DigitalBiomarkerDiscoveryPipeline/Digital_Health_Data_Repository - 5568e7b23923736119a5976d8473c8b8def2c917 authored over 2 years ago

Merge pull request #18 from DigitalBiomarkerDiscoveryPipeline/joe-cgm

* Update table of contents
* Add box link to CGM dataset

github.com/DigitalBiomarkerDiscoveryPipeline/Digital_Health_Data_Repository - e4c5581f2ba6c13f1a43789a4367557e6b9e91bb authored over 2 years ago

Update download link to Box

github.com/DigitalBiomarkerDiscoveryPipeline/Digital_Health_Data_Repository - c6f56c03accf3950ff26d013cb908890b417da30 authored over 2 years ago