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Bioprotocols Working Group

The Bioprotocols Working Group is an open community designing and implementing a specification for scientific protocols, solving common laboratory interchange problems.
Collective - Host: opensource - https://opencollective.com/bioprotocols - Website: http://bioprotocols.org/ - Code: https://github.com/Bioprotocols

Merge pull request #211 from Bioprotocols/danbryce/issue210

Removed submodule for container-ontology

github.com/Bioprotocols/labop - 2e2bd88150c71a440771fd369f40295dfd622324 authored 12 months ago by Daniel Bryce <[email protected]>
Removed submodule for container-ontology

github.com/Bioprotocols/labop - 637e40534df7be7a7671b4305b1a01d96a673d46 authored 12 months ago by Daniel Bryce <[email protected]>
Merge pull request #209 from Bioprotocols/pylabrobot-specialization-rebase

Pylabrobot specialization rebase

github.com/Bioprotocols/labop - 42b899c6d18a0692ab53a16b76a58dbbb7296bb0 authored 12 months ago by Daniel Bryce <[email protected]>
Merge pull request #208 from Bioprotocols/labop-harness-rebase

Labop harness

github.com/Bioprotocols/labop - 74abe5460bafdf2676dc7ebc55002f9db018473e authored 12 months ago by Daniel Bryce <[email protected]>
commit to merge

github.com/Bioprotocols/labop - 89a09a23e80f786132ccaa36e782032c42d44eb1 authored about 1 year ago by Luiza Z Hesketh <[email protected]>
fix reference

github.com/Bioprotocols/labop - e62cbc5fa70068a8d94839b5c0ef84af231b1869 authored about 1 year ago by Daniel Bryce <[email protected]>
add pcr pylabrobot protocol

github.com/Bioprotocols/labop - bf802a178d9f3959976bfb53bec27813de116357 authored about 1 year ago by Daniel Bryce <[email protected]>
setup protocol harness

github.com/Bioprotocols/labop - 997210b1ff24383a2707826fca439389ba417719 authored about 1 year ago by Daniel Bryce <[email protected]>
fix setup.py packages

github.com/Bioprotocols/labop - 7be80cc14410efd445f229171dd12e3cf34bfa12 authored about 1 year ago by Daniel Bryce <[email protected]>
fix tests

github.com/Bioprotocols/labop - 9d40972f833240c5f94a235bcdd765e1d14f1488 authored about 1 year ago by Daniel Bryce <[email protected]>
remove import for constants

github.com/Bioprotocols/labop - 5b438cba853f151cad27f5e1c67d6b1c1fa587db authored about 1 year ago by Daniel Bryce <[email protected]>
bad import

github.com/Bioprotocols/labop - f267eb3074ec0cc9b32c11cbc18e90bc9c8ecbfb authored about 1 year ago by Daniel Bryce <[email protected]>
harness work, validation bug fix

github.com/Bioprotocols/labop - 03696b5de2e0db1ccf6a53a00e2d9fceab142249 authored about 1 year ago by Daniel Bryce <[email protected]>
cleanup files, make targets, ignores clean

github.com/Bioprotocols/labop - e1275007e5c79836629002955ce47df44a284357 authored about 1 year ago by Daniel Bryce <[email protected]>
fix tests

github.com/Bioprotocols/labop - 0bce91de9678c7e66ed90906103a318609975c10 authored about 1 year ago by Daniel Bryce <[email protected]>
pylabrobot specialization starting point

github.com/Bioprotocols/labop - 2e9ea4fecca3fb9575919adf785bad682456b684 authored about 1 year ago by Daniel Bryce <[email protected]>
fix mkdocs warnings

github.com/Bioprotocols/labop - d3fcfd883d9304345e908b42c00d2957f81c0edc authored about 1 year ago by Daniel Bryce <[email protected]>
add mkdocs and doctests

github.com/Bioprotocols/labop - d4327628d361a550f45a241e81eff7056f1ec96f authored about 1 year ago by Daniel Bryce <[email protected]>
Move examples into subdirs

github.com/Bioprotocols/labop - 9191d382159c25df0706408fbfe22d2273a5af29 authored about 1 year ago by Daniel Bryce <[email protected]>
Merge pull request #205 from Bioprotocols/no-monkey-patch

No monkey patch

github.com/Bioprotocols/labop - 1236d4c8712cf5eced4af2bd26945e66788e051b authored about 1 year ago by Daniel Bryce <[email protected]>
fix tests

github.com/Bioprotocols/labop - d8b9f69d368c916be49802f303dc54524a7dea74 authored about 1 year ago by Daniel Bryce <[email protected]>
address review

github.com/Bioprotocols/labop - 1e45ec2fdff4ee8f0f1b500168cf4e0d6ec66119 authored about 1 year ago by Daniel Bryce <[email protected]>
fix notebook tests

github.com/Bioprotocols/labop - 22797273cfe9324d5241449d036b01d712ce92bd authored over 1 year ago by Daniel Bryce <[email protected]>
fix import

github.com/Bioprotocols/labop - 07122945c64442000fa80c97fe102418a0848f2a authored over 1 year ago by Daniel Bryce <[email protected]>
fix tests

github.com/Bioprotocols/labop - 65df4ac5ea40806fcae409fd2ad827f3fd3c34cb authored over 1 year ago by Daniel Bryce <[email protected]>
Merge commit '81e2c442e7805fe562fb626c0aa64e934e09355f' into no-monkey-patch

github.com/Bioprotocols/labop - 9d4d04ed96aa8bafaf243b9c71be2afe3336231e authored over 1 year ago by Daniel Bryce <[email protected]>
fix tests

github.com/Bioprotocols/labop - 7f0d5d94860935af7a8e2598250049c39d888372 authored over 1 year ago by Daniel Bryce <[email protected]>
fix tests

github.com/Bioprotocols/labop - 51dcecb848e6785227cb3420c79e93275281d141 authored over 1 year ago by Daniel Bryce <[email protected]>
Merge remote-tracking branch 'origin/main' into no-monkey-patch

github.com/Bioprotocols/labop - c12acf2271394e83f292441349ad9e7ba57cdd55 authored over 1 year ago by Daniel Bryce <[email protected]>
Merge commit '87f9d31e67d6d31246120712044152d4abc5079e' into no-monkey-patch

github.com/Bioprotocols/labop - c21b157403d27f60954711a4a0b89d9f890a86cb authored over 1 year ago by Daniel Bryce <[email protected]>
Merge commit '19e009a98f210f03130029c39390a9021660d447' into no-monkey-patch

github.com/Bioprotocols/labop - 1fde000e674bd59103154397b1bf1af6e8b94c55 authored over 1 year ago by Daniel Bryce <[email protected]>
Merge commit 'e4f6f35bce765532e015bc072bd1575d315d5d77' into no-monkey-patch

github.com/Bioprotocols/labop - 0c00848a6d3f1b4d7aef352279827f4b1ec1b766 authored over 1 year ago by Daniel Bryce <[email protected]>
Merge commit '86cb6c2eeafdd8c74590c5ccbef7f44c622b5a91' into no-monkey-patch

github.com/Bioprotocols/labop - c307fd1dd2827403bc850b7cd1a03615e7e3d86e authored over 1 year ago by Daniel Bryce <[email protected]>
Merge commit '57a5f0a9dbe11cb3572d3153ffed343e8ba5185f' into no-monkey-patch

github.com/Bioprotocols/labop - d17c6254fba4b67bb308948f1cb2e03bde84128a authored over 1 year ago by Daniel Bryce <[email protected]>
Merge commit '8e699133efffc3c8c0ff5f0b7db2e4bc16a657bd' into no-monkey-patch

github.com/Bioprotocols/labop - 67614fc0c0ebfd8406fe2151be54c78da6f6decf authored over 1 year ago by Daniel Bryce <[email protected]>
Merge commit 'f605982638c0a75ffbbb4d7bca7754bf50de1b8e' into no-monkey-patch

github.com/Bioprotocols/labop - e329efb45c07873937df773730ac555e045a9ac8 authored over 1 year ago by Daniel Bryce <[email protected]>
Merge commit '0907f297b67c3366664b6e4bbd9c0ebca6b2f7ec' into no-monkey-patch

github.com/Bioprotocols/labop - 13fe729ab499e823d421ff2f7dae73517dd30b28 authored over 1 year ago by Daniel Bryce <[email protected]>
Merge commit '8eb34378fa90b530ded757524bba5e6ebeeb00db' into no-monkey-patch

github.com/Bioprotocols/labop - 33d0bc026116111ca56c6708e255046a7bd919f9 authored over 1 year ago by Daniel Bryce <[email protected]>
Merge commit '15276d72cbae0d635282fa25aa4b9148c3ad7c1e' into no-monkey-patch

github.com/Bioprotocols/labop - 03b3f2d4b14fdfb9f89d72cb5f3e7b40f30ee46f authored over 1 year ago by Daniel Bryce <[email protected]>
Merge commit '51ea93fbf08803e55db9cbf073c747902bbef0fe' into no-monkey-patch

github.com/Bioprotocols/labop - 86d52693323c1924b96b4e06187dd98ad33553a3 authored over 1 year ago by Daniel Bryce <[email protected]>
Merge commit 'd410f699be1f702292a59038772fe714094cebf9' into no-monkey-patch

github.com/Bioprotocols/labop - c5ef53a580ccf72b7c3b618a2c4fb81861f07143 authored over 1 year ago by Daniel Bryce <[email protected]>
Merge commit 'adf045520568377beced7bfff42d006f65dcc872' into no-monkey-patch

github.com/Bioprotocols/labop - 9a22e08c1a110b44c2f757ca9b3242abd1c6d993 authored over 1 year ago by Daniel Bryce <[email protected]>
Merge commit '1cbdb2aa2a9a113e18128186137e04271d741572' into no-monkey-patch

github.com/Bioprotocols/labop - d183631bf805bbda80a87ef46a3b6af56c5eef88 authored over 1 year ago by Daniel Bryce <[email protected]>
Merge commit '820c92eca815c480d507c55ac0fdb7c0dd39297e' into no-monkey-patch

github.com/Bioprotocols/labop - f9e1b82f0af02b8b9c3b48c05a994223595c2b2d authored over 1 year ago by Daniel Bryce <[email protected]>
Merge commit '3cac677629b87522b295658a360168506558aee3' into no-monkey-patch

github.com/Bioprotocols/labop - 726f813e299b962919232262da8a03f58c65ae10 authored over 1 year ago by Daniel Bryce <[email protected]>
Merge commit '7a73b0c91e89a9fcee44745c46071bcb40b01c04' into no-monkey-patch

github.com/Bioprotocols/labop - 732a0b15b02850c0f30b47f734a9f9d90c746447 authored over 1 year ago by Daniel Bryce <[email protected]>
fix tests

github.com/Bioprotocols/labop - 51fb9f7a50a8960243a90b2b48d95d5354e7d54b authored over 1 year ago by Daniel Bryce <[email protected]>
modified experiment data

github.com/Bioprotocols/labop - 81e2c442e7805fe562fb626c0aa64e934e09355f authored over 1 year ago by Daniel Bryce <[email protected]>
fix tests

github.com/Bioprotocols/labop - b92623ce3d6b9dff03ef88ac12f00bffed9a7b4c authored over 1 year ago by Daniel Bryce <[email protected]>
tagged-version

github.com/Bioprotocols/labop - 26f4b71140334d4da56709cbfb2f8739dae1c10e authored over 1 year ago by Daniel Bryce <[email protected]>
backpatch ecl

github.com/Bioprotocols/labop - afe71b3c5825a012c4c0fce49d69d48145fdc3af authored over 1 year ago by Daniel Bryce <[email protected]>
backpatch protocol

github.com/Bioprotocols/labop - 2702b153681a9d69d8d1316c595bf33323793ef4 authored over 1 year ago by Daniel Bryce <[email protected]>
Include link to blog in README

github.com/Bioprotocols/labop - 69f5ec9ed05f797c89ec641f912ac06b707d9399 authored over 1 year ago by Bryan Bartley <[email protected]>
Update subprotocol for preparing calibrant solutions

github.com/Bioprotocols/labop - 2b9e8cd2ec0c821858f2a8b4125e57bd774880b6 authored over 1 year ago by Bryan Bartley <[email protected]>
dockerfile and serial dilution

github.com/Bioprotocols/labop - b159177fbbc80100ff43481321b32b427a2d61f1 authored over 1 year ago by Daniel Bryce <[email protected]>
tweak ecl encoding

github.com/Bioprotocols/labop - 6d7e06dfec3ffe9fa6c65eccc75c031e157150c1 authored over 1 year ago by Daniel Bryce <[email protected]>
transfer update

github.com/Bioprotocols/labop - 21d8abf2cad3995f43198de6ae50042e584d79db authored over 1 year ago by Daniel Bryce <[email protected]>
transfer update

github.com/Bioprotocols/labop - 1955364ce0216612d02a8915ce6d16f8b9c0f125 authored over 1 year ago by Daniel Bryce <[email protected]>
full protocol

github.com/Bioprotocols/labop - b677195c04b04b645d5c61819e4d820812036a41 authored over 1 year ago by Daniel Bryce <[email protected]>
artifacts

github.com/Bioprotocols/labop - 007b762d868e4749025660e445b46b752ca32eb5 authored over 1 year ago by Daniel Bryce <[email protected]>
candidate final version

github.com/Bioprotocols/labop - 2394577fcd9c30ce924e286df50656f1de820480 authored over 1 year ago by Daniel Bryce <[email protected]>
wip

github.com/Bioprotocols/labop - 8bbac7d2034bfc627b499626fde25b5c493e4682 authored over 1 year ago by Daniel Bryce <[email protected]>
create separate protocols for solution generation

github.com/Bioprotocols/labop - 3a72b176bf43676efcc8ce1fb4a3b9eab015055e authored over 1 year ago by Daniel Bryce <[email protected]>
dockerfile for experiment script

github.com/Bioprotocols/labop - 5bb56ce465558ed14aa657fea1dc493550dba666 authored over 1 year ago by Daniel Bryce <[email protected]>
Add README for calibration script

github.com/Bioprotocols/labop - d6568e32da43596eb0274dec77e0edae560a45a5 authored over 1 year ago by Bryan Bartley <[email protected]>
autoprotocol optional

github.com/Bioprotocols/labop - 0dcdbaf29f066558c230456ac12586ca30346fb4 authored over 1 year ago by Daniel Bryce <[email protected]>
Restore commented code block

github.com/Bioprotocols/labop - b04a52356297bde0dbff39674ecdbc680901a716 authored over 1 year ago by Bryan Bartley <[email protected]>
Why is this here?

github.com/Bioprotocols/labop - 061ac68140a6b30843c9895c8a838188cf36999a authored over 1 year ago by Bryan Bartley <[email protected]>
Remove unnecessary resolutions

github.com/Bioprotocols/labop - 6c2d7edb5d7bc38aef042805dbf63f3900d9d13d authored over 1 year ago by Bryan Bartley <[email protected]>
Fix resolution mapping in Provision primitive

github.com/Bioprotocols/labop - 0f32e6e35208ae3e1a8c1322a89064fedd2c01ea authored over 1 year ago by Bryan Bartley <[email protected]>
Transfer primitive uses resolutions dict

github.com/Bioprotocols/labop - 3d10e8f8c09f8ce79f3e6fa55016ef24fc944761 authored over 1 year ago by Bryan Bartley <[email protected]>
missing change

github.com/Bioprotocols/labop - c231710d32468621c796fb41d18e20d886fb159d authored over 1 year ago by Daniel Bryce <[email protected]>
single color calibration

github.com/Bioprotocols/labop - dedfb837342095b84f3ab733bd99335ca498f148 authored over 1 year ago by Daniel Bryce <[email protected]>
merge

github.com/Bioprotocols/labop - 60d7c3defef3e33771e5bde74d22dcc35e246a5b authored over 1 year ago by Daniel Bryce <[email protected]>
Merge branch 'main' into no-monkey-patch

github.com/Bioprotocols/labop - 707900e47aec385bb8341e4d00e9ae405cef0a18 authored over 1 year ago by Daniel Bryce <[email protected]>
passing tests

github.com/Bioprotocols/labop - e5053c579b3e196e106fe0797ba8fb65143de13d authored over 1 year ago by Daniel Bryce <[email protected]>
new test rubrics

github.com/Bioprotocols/labop - d4e891eb83fb752b4b947b4e900d25531f79d6a1 authored over 1 year ago by Daniel Bryce <[email protected]>
improve error reporting

github.com/Bioprotocols/labop - 9e7a472349587758a3488c73fe096186c6c7c004 authored over 1 year ago by Daniel Bryce <[email protected]>
make autoprotocol optional

github.com/Bioprotocols/labop - b2639850df95f3c5bf3e4db5e176070226ec39bd authored over 1 year ago by Daniel Bryce <[email protected]>
ignores

github.com/Bioprotocols/labop - 255c139a1a86a7eb5ad7d00f0a131a466b402222 authored over 1 year ago by Daniel Bryce <[email protected]>
syntax tweaks

github.com/Bioprotocols/labop - 9358ea8c97fe6000969bf4429a960cfdc39fc3b3 authored over 1 year ago by Daniel Bryce <[email protected]>
typo and formatting

github.com/Bioprotocols/labop - 672c9bcb16c5aaf4a5707a5c0e40ce651385d69a authored over 1 year ago by Daniel Bryce <[email protected]>
fix buffer volumes

github.com/Bioprotocols/labop - d8f11d35128d6a3fa7fce89aaebc701222379720 authored over 1 year ago by Daniel Bryce <[email protected]>
artifacts

github.com/Bioprotocols/labop - 47c4e4b7acc18d58bf5d008ed2e857efabdf901c authored over 1 year ago by Daniel Bryce <[email protected]>
Merge branch 'ecl' of github.com:Bioprotocols/paml into ecl

github.com/Bioprotocols/labop - 180acd6d905d3dcbb1ea457bc724c521eb550328 authored over 1 year ago by Bryan Bartley <[email protected]>
Fixed handling of container coordinates in ECL Transfer unit operation

github.com/Bioprotocols/labop - 293e41f9147fe568a4399552763ac7ff4cc4d309 authored over 1 year ago by Bryan Bartley <[email protected]>
fix discard container geometry for sample graph

github.com/Bioprotocols/labop - 908e6741ac81f8533145dbd27e7d4426a0d068e3 authored over 1 year ago by Daniel Bryce <[email protected]>
Add fluorescence primitive

github.com/Bioprotocols/labop - a75356658b4190f34fafa867fca06c0d775f7875 authored over 1 year ago by Bryan Bartley <[email protected]>
Merge branch 'ecl' of github.com:Bioprotocols/paml into ecl

github.com/Bioprotocols/labop - 8c18b6d811ec9327a26d0d6bdd1f3f650506ebd3 authored over 1 year ago by Bryan Bartley <[email protected]>
fix index by col

github.com/Bioprotocols/labop - 87da3f220171b5c1ff3bd7bf0c716d85e84e02d3 authored over 1 year ago by Daniel Bryce <[email protected]>
missing brackets

github.com/Bioprotocols/labop - c7f8549f22d271b8458f2b461307c8c393bd6741 authored over 1 year ago by Daniel Bryce <[email protected]>
use well ids, not ranges.

github.com/Bioprotocols/labop - 57ddf36edc6cd6f6be14725f25e495d65cc1a8d7 authored over 1 year ago by Daniel Bryce <[email protected]>
add transfer for provision

github.com/Bioprotocols/labop - ab57ad2d000ac4860be3ab25e7688a922686ad8f authored over 1 year ago by Daniel Bryce <[email protected]>
ignore subprotocol primitives if applicable.

github.com/Bioprotocols/labop - a52c40a70f6ff9a3b3f2595aacc196ea75f7130c authored over 1 year ago by Daniel Bryce <[email protected]>
remove duplicate setup.py key

github.com/Bioprotocols/labop - 7a76a2edf6bc5259358677bbebf86a300b69eda6 authored over 1 year ago by Daniel Bryce <[email protected]>
Merge branch 'ecl' of github.com:Bioprotocols/paml into ecl

github.com/Bioprotocols/labop - f1e7b42541a5883f288fa4c0a4f524d0622b3b0b authored over 1 year ago by Bryan Bartley <[email protected]>
Fix missing open bracket

github.com/Bioprotocols/labop - facc8da8b8504daf876f37b293525290ff238fb6 authored over 1 year ago by Bryan Bartley <[email protected]>
resuspend subproto, fix ee bug clr tokens, col ind

github.com/Bioprotocols/labop - e95175e2af3f6925a27e6bb2645dc5827790800e authored over 1 year ago by Daniel Bryce <[email protected]>
notes on fixing markdown for serial dilution

github.com/Bioprotocols/labop - ad9ea9aacdbca6b5a1dc9867fa00863132d68a6b authored over 1 year ago by Daniel Bryce <[email protected]>
added subprotocol for resuspension

github.com/Bioprotocols/labop - 9d7135e909a083a1cf7c9437ffd2ab241a503b12 authored over 1 year ago by Daniel Bryce <[email protected]>