Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

Bebop

Create rock solid scientific software and the tools to maintain them.
Collective - Host: opensource - https://opencollective.com/bebop - Code: https://github.com/bebop

Separated minimums between design and simulate

github.com/bebop/poly - whitead opened this pull request 3 months ago
updated devcontainer image.

github.com/bebop/poly - TimothyStiles opened this pull request 3 months ago
lint fix to use string interpolation.

github.com/bebop/poly - TimothyStiles opened this pull request 4 months ago
Update README.md

github.com/bebop/poly - TimothyStiles opened this pull request 8 months ago
Tutorial refactor

github.com/bebop/poly - TimothyStiles opened this pull request 8 months ago
Turn on `revive` linter in golangci config

github.com/bebop/poly - carreter opened this issue 11 months ago
added package level doc strings.

github.com/bebop/poly - TimothyStiles opened this pull request 11 months ago
Run length bwt

github.com/bebop/poly - TwFlem opened this pull request 11 months ago
Update CHANGELOG.md

github.com/bebop/poly - TimothyStiles opened this pull request 11 months ago
moved align, bwt, and mash into new search package.

github.com/bebop/poly - TimothyStiles opened this pull request 11 months ago
Genbank parser rewrite

github.com/bebop/poly - carreter opened this pull request 12 months ago
added some more test coverage to fold subpackage.

github.com/bebop/poly - TimothyStiles opened this pull request 12 months ago
Fixing updateweights example

github.com/bebop/poly - cachemoi opened this pull request 12 months ago
Genbank parser needs heavy refactor or a rewrite

github.com/bebop/poly - carreter opened this issue about 1 year ago
Migrate to the `just` build system and add release tooling

github.com/bebop/poly - carreter opened this pull request about 1 year ago
Fix help wanted discord webhook

github.com/bebop/poly - carreter opened this pull request about 1 year ago
Fix discord help wanted notifications

github.com/bebop/poly - carreter opened this pull request about 1 year ago
Proposal - New external package - rebased

github.com/bebop/poly - TimothyStiles opened this issue about 1 year ago
Update tutorials no gitpod

github.com/bebop/poly - TimothyStiles opened this pull request about 1 year ago
Grant blocking issues bot write access to PRs

github.com/bebop/poly - carreter opened this pull request about 1 year ago
Create nightly, dev, and stable build channels

github.com/bebop/poly - carreter opened this issue about 1 year ago
Proposal: Create a biological reviewers group

github.com/bebop/poly - TimothyStiles opened this issue about 1 year ago
Notify on issue being labeled with help wanted

github.com/bebop/poly - carreter opened this pull request about 1 year ago
Comment out info lines of pull request template

github.com/bebop/poly - carreter opened this pull request about 1 year ago
Devops cleanup

github.com/bebop/poly - TimothyStiles opened this pull request about 1 year ago
changed parameters in .goreleaser.yml

github.com/bebop/poly - TimothyStiles opened this pull request about 1 year ago
migrated namespace from TimothyStiles/poly to bebop/poly

github.com/bebop/poly - TimothyStiles opened this pull request about 1 year ago
more permanent fix to start codon regression

github.com/bebop/poly - TimothyStiles opened this pull request about 1 year ago
patched start codon regression

github.com/bebop/poly - TimothyStiles opened this pull request about 1 year ago
Each fragment in a PCR amplification should have a circular tag

github.com/bebop/poly - Koeng101 opened this issue about 1 year ago
Remove start codon check

github.com/bebop/poly - Koeng101 opened this issue about 1 year ago
#360 Bwt

github.com/bebop/poly - TwFlem opened this pull request about 1 year ago
Removed update weights

github.com/bebop/poly - Koeng101 opened this pull request about 1 year ago
fixed bug where linear, non-directional, single cuts were copying and not just moving overhangs from the fragment sequence.

github.com/bebop/poly - TimothyStiles opened this pull request about 1 year ago
fixed bug that produced wrong overhang in linear, non-directional, single cut reactions.

github.com/bebop/poly - TimothyStiles opened this pull request about 1 year ago
renamed OptimizeSequence to just Optimize.

github.com/bebop/poly - TimothyStiles opened this pull request about 1 year ago
added example test for mash usage.

github.com/bebop/poly - TimothyStiles opened this pull request about 1 year ago
Add example test to MASH

github.com/bebop/poly - TimothyStiles opened this issue about 1 year ago
Improve Hash2Fragment by using a map to validate allowed sequence characters

github.com/bebop/poly - matiasinsaurralde opened this pull request about 1 year ago
Bump Golang version

github.com/bebop/poly - matiasinsaurralde opened this pull request about 1 year ago
Proposal: create a distance package for Mash, Geometric string distance, and other distance metrics.

github.com/bebop/poly - TimothyStiles opened this issue about 1 year ago
Tutorial and example tests for refactored golden gate cloning

github.com/bebop/poly - TimothyStiles opened this issue about 1 year ago
Add seqhash v2

github.com/bebop/poly - Koeng101 opened this pull request about 1 year ago
Compressed Seqhash

github.com/bebop/poly - Koeng101 opened this issue about 1 year ago
Poly n Plannotate

github.com/bebop/poly - Koeng101 opened this issue about 1 year ago
mash: optimize mash similarity function, add benchmark

github.com/bebop/poly - matiasinsaurralde opened this pull request about 1 year ago
Io to bio with genbank fixes

github.com/bebop/poly - abondrn opened this pull request about 1 year ago
Cloning refactor and data race fix

github.com/bebop/poly - TwFlem opened this pull request about 1 year ago
Simplifying codon table interface

github.com/bebop/poly - cachemoi opened this issue about 1 year ago
Methylated GoldenGates

github.com/bebop/poly - Koeng101 opened this pull request about 1 year ago
Simulate enzyme methylation through lowercasing

github.com/bebop/poly - Koeng101 opened this issue about 1 year ago
Genbank parser fixes

github.com/bebop/poly - abondrn opened this pull request about 1 year ago
Genbank import and export from JSON should include feature sequences

github.com/bebop/poly - Koeng101 opened this issue about 1 year ago
Add FragmentWithOverhangs

github.com/bebop/poly - Koeng101 opened this pull request about 1 year ago
patched genbank parser and builder to handle BASE COUNT.

github.com/bebop/poly - TimothyStiles opened this pull request about 1 year ago
created parser regression test for nested sublocations.

github.com/bebop/poly - TimothyStiles opened this pull request about 1 year ago
Genbank location parser breaks on parsing this location.

github.com/bebop/poly - TimothyStiles opened this issue about 1 year ago
Genbank parser doesn't handle feature attributes with colliding names.

github.com/bebop/poly - TimothyStiles opened this issue about 1 year ago
Hacktoberfest Scratchpad

github.com/bebop/poly - abondrn opened this pull request about 1 year ago
Concurrent mashing

github.com/bebop/poly - Koeng101 opened this issue about 1 year ago
Fix YAML syntax error in take.yml

github.com/bebop/poly - carreter opened this pull request about 1 year ago
Fix PCR bug (issue #279).

github.com/bebop/poly - carreter opened this pull request about 1 year ago
Allow non-contributors to take an issue with .take

github.com/bebop/poly - carreter opened this pull request about 1 year ago
Document all these workflow changes in `CONTRIBUTING.md`

github.com/bebop/poly - carreter opened this issue about 1 year ago
Reduce number of reviewers necessary for merge

github.com/bebop/poly - carreter opened this issue about 1 year ago
Add `CHANGELOG.md` with current unreleased changes.

github.com/bebop/poly - carreter opened this pull request about 1 year ago
Add a pull request template.

github.com/bebop/poly - carreter opened this pull request about 1 year ago
This project should have a `CHANGELOG.md`

github.com/bebop/poly - carreter opened this issue about 1 year ago
Update issue templates and disable blank issues.

github.com/bebop/poly - carreter opened this pull request about 1 year ago
Refactor `clone` package

github.com/bebop/poly - carreter opened this issue about 1 year ago
Create Automated Benchmarking Suite

github.com/bebop/poly - TimothyStiles opened this issue about 1 year ago
Move pipelines to more reproducible platform with less YAML

github.com/bebop/poly - TimothyStiles opened this issue about 1 year ago
Improve and standardize parsing API

github.com/bebop/poly - carreter opened this issue about 1 year ago
Write more thorough explanation of alignment algorithms in align.go

github.com/bebop/poly - carreter opened this issue about 1 year ago
Create a tutorial series around a real-world, working example

github.com/bebop/poly - carreter opened this issue about 1 year ago
Implement LinearFold for prediction of RNA secondary structure

github.com/bebop/poly - carreter opened this issue about 1 year ago
Implement Burrows-Wheeler transform

github.com/bebop/poly - carreter opened this issue about 1 year ago
Implement Gibson Assembly

github.com/bebop/poly - carreter opened this issue about 1 year ago
Add the poly Google group email as a method of contact.

github.com/bebop/poly - carreter opened this pull request about 1 year ago
Add a CIF parser

github.com/bebop/poly - carreter opened this pull request about 1 year ago
MASH template matching

github.com/bebop/poly - Koeng101 opened this issue about 1 year ago
Pileup parsing deletion with .

github.com/bebop/poly - Koeng101 opened this issue over 1 year ago
Mark issues and PRs as stale after 2 months

github.com/bebop/poly - carreter opened this pull request over 1 year ago
Add "blocked by" relationships between issues/PRs

github.com/bebop/poly - carreter opened this pull request over 1 year ago
`Feature.GetSequence()` always returns a nil error value

github.com/bebop/poly - carreter opened this issue over 1 year ago
Common Genbank `Feature.Type` values should be enumerated

github.com/bebop/poly - carreter opened this issue over 1 year ago
Add stats to codon tables

github.com/bebop/poly - cachemoi opened this pull request over 1 year ago
Biowasm minimap2/samtools integration

github.com/bebop/poly - Koeng101 opened this issue over 1 year ago
Enable line-length linter `lll` for comments

github.com/bebop/poly - carreter opened this issue over 1 year ago
Create top-level `types.go` to define types shared across packages

github.com/bebop/poly - carreter opened this issue over 1 year ago
Improvements to issue/PR labeling/management

github.com/bebop/poly - carreter opened this issue over 1 year ago
`CODE_OF_CONDUCT.md` missing contact under Enforcement section

github.com/bebop/poly - carreter opened this issue over 1 year ago
created a super minimal mash function for sketching sequences.

github.com/bebop/poly - TimothyStiles opened this pull request over 1 year ago
Re-enable golangci-lint.yml, turn on linters, and lint.

github.com/bebop/poly - carreter opened this pull request over 1 year ago
`Gff.AddFeature()` code is misleading and mutates `Feature` state

github.com/bebop/poly - carreter opened this issue over 1 year ago
Add svb compression to slow5

github.com/bebop/poly - Koeng101 opened this pull request over 1 year ago
Refactor

github.com/bebop/ark - TimothyStiles opened this pull request over 1 year ago
Revert "Refactor"

github.com/bebop/ark - TimothyStiles opened this pull request over 1 year ago
Refactor

github.com/bebop/ark - TimothyStiles opened this pull request over 1 year ago
Add a newline normalizing wrapper for io.Readers

github.com/bebop/poly - carreter opened this pull request over 1 year ago