github.com/ome/omero-renderer commits | Ecosyste.ms: OpenCollective

modified way default colors are set (see #670)

git-svn-id: file:///home/svn/omero/trunk@7304 05709c45-44f0-0310-885b-81a1db45b4a6

0ec6f9d62be98fb8b17c8c01a4cd311c7859356c authored over 14 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

cleaning

git-svn-id: file:///home/svn/omero/trunk@7294 05709c45-44f0-0310-885b-81a1db45b4a6

63098157ba7d8218d405bccb2848d43d49dcc943 authored over 14 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

increase the maximum number of channels used to determine the color model

git-svn-id: file:///home/svn/omero/trunk@7159 05709c45-44f0-0310-885b-81a1db45b4a6

12c9ef145e828d602a4ad0a96879de21182d6fa8 authored over 14 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

review code so that light path is taken into account before filter set.

git-svn-id: file:///home/svn/omero/trunk@7135 05709c45-44f0-0310-885b-81a1db45b4a6

a5bbff8803c03acb1cf5e47dc2923db758942c7f authored over 14 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

added support for light path (Closed #2435)

git-svn-id: file:///home/svn/omero/trunk@7105 05709c45-44f0-0310-885b-81a1db45b4a6

5f8175d77a1d82835b0a96b09c52fa052eeb3cc3 authored over 14 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

see #1750, #2287 - Fixing `FilterSet` links and the naming of linked objects

git-svn-id: file:///home/svn/omero/trunk@6758 05709c45-44f0-0310-885b-81a1db45b4a6

fa7916e137041e76e0d9d9f96b7dd7ed6cf46e31 authored over 14 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

see #1750 - RC1 SQL for 4.2 DB, code and tests compile. Needs review!

git-svn-id: file:///home/svn/omero/trunk@6741 05709c45-44f0-0310-885b-81a1db45b4a6

b4f1a081a3df79471bdd503c3d3bb24141e42664 authored over 14 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

fix #2149 - Upgrading ant, ivy and adding ivyeclipse task (see #2148)

git-svn-id: file:///home/svn/omero/trunk@6551 05709c45-44f0-0310-885b-81a1db45b4a6

30a053982c91cb42b3b253486c44ab7f9d84ea4a authored over 14 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

* Fixed bug with primary color decision making

* Fixed null/int[] { } map of rows causing *huge* table slicing
* Fixed mask column lookup in b...

406cddd2beb5cf99a7cab10c7b50595babdbcd39 authored about 15 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Doing a more thorough job of maintaining color fidelity of masks

git-svn-id: file:///home/svn/omero/trunk@5742 05709c45-44f0-0310-885b-81a1db45b4a6

b510f7472a25f72f7c95877e761e3a2e262d80bc authored about 15 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Improve fidelity of mask rendering; may improve speed slightly on slower machines

git-svn-id: file:///home/svn/omero/trunk@5731 05709c45-44f0-0310-885b-81a1db45b4a6

6bcaad04ce68a2ba6d511232fa17c383564adff2 authored about 15 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

* Rendering engine overlay drawing support

* "bit" type support in PixelData
* Bit mask retrieval from OmeroTables
* Processor count dete...

1d65fffd416e77ab8e1fd4a4ecab42ae18db6497 authored about 15 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Fixed the hasEmissionWavelength method

git-svn-id: file:///home/svn/omero/trunk@5462 05709c45-44f0-0310-885b-81a1db45b4a6

cd66f07b037735408e52bf8d4d190c01dda5cca7 authored about 15 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

added new constants and updated doc

git-svn-id: file:///home/svn/omero/trunk@5326 05709c45-44f0-0310-885b-81a1db45b4a6

4ca2796b657facaa3f73162434efe539b468bfa8 authored about 15 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

refactor method

git-svn-id: file:///home/svn/omero/trunk@5137 05709c45-44f0-0310-885b-81a1db45b4a6

83a344fb27236045fceb7d4389832481a98cd8fb authored over 15 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

Improved rule to set channel color see ticket#1467

git-svn-id: file:///home/svn/omero/trunk@5136 05709c45-44f0-0310-885b-81a1db45b4a6

e98a0922ad1b3d1a775a5d13f703944a231be349 authored over 15 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

fixed hasEmissionData method and statistics

git-svn-id: file:///home/svn/omero/trunk@5125 05709c45-44f0-0310-885b-81a1db45b4a6

9e873e5f3be3a17fa47a9cf264607c7830446f89 authored over 15 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

improved color settings and stats

git-svn-id: file:///home/svn/omero/trunk@5123 05709c45-44f0-0310-885b-81a1db45b4a6

7d2a9c3d4d8bf02d1ab56db6a22132a83f98405f authored over 15 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

review strategy to assign color to a channel

git-svn-id: file:///home/svn/omero/trunk@5104 05709c45-44f0-0310-885b-81a1db45b4a6

a71de68dd73b07e09586826672caded59b6f799d authored over 15 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

Added new colors and temporary fix for Lif

git-svn-id: file:///home/svn/omero/trunk@5089 05709c45-44f0-0310-885b-81a1db45b4a6

4b0752892fab228d1aaef1459218c1b9e6af706b authored over 15 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

Modified the way we set color. See ticket #1467

git-svn-id: file:///home/svn/omero/trunk@5076 05709c45-44f0-0310-885b-81a1db45b4a6

d16c350dde0ed4da177769ca46252bb49e789cdb authored over 15 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

Fixed #1353, made the quantum package more unit test friendly and added clean room unit testing infrastructure for the rendering engine.

git-svn-id: file:///home/svn/omero/trunk@4421 05709c45-44f0-0310-885b-81a1db45b4a6

04c59d79046af58cfbd02a50067abe433b955bea authored over 15 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Solution for #1304.

git-svn-id: file:///home/svn/omero/trunk@4226 05709c45-44f0-0310-885b-81a1db45b4a6

a76eac6900d82a1bcc489d5661dfd6e83470fe6a authored over 15 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

* Infrastructure to support user specified physical pixel sizes (#1300)

* Fixed rendering component Eclipse .classpath

git-svn-id: file:///home/svn/omero/trunk@4198 0...

139ae5167d61d5f122f50f3ec1202d783dea5439 authored over 15 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

updated gateway and renderingEngine for RGBA colour model.

git-svn-id: file:///home/svn/omero/trunk@3873 05709c45-44f0-0310-885b-81a1db45b4a6

4ddead12c096267711239ef88a0d770adf4ca58a authored almost 16 years ago by donald <donald@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroBuild : Removing dist/client and adding omero_version.py (unfinished)

git-svn-id: file:///home/svn/omero/trunk@3729 05709c45-44f0-0310-885b-81a1db45b4a6

24b5cf880c314aa334a8d9438f370c258dfbce2b authored almost 16 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroBuild : Removal of dependencies.xml and other refactorings

* Now using installIvy macro everywhere
* Should be protected by an unless="x.done"
* Renamed...

3c31dec17eed7bfb7b7c99450912fda374ee28a9 authored almost 16 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

ticket:1174 - Working top-level "test" and "integration" targets

* Removed all references to org="omero-tools"
* Added test-resolver to ivysettings.xml
* Adde...

faec137d80dfb9a2209a76e375be088f203f25b8 authored almost 16 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

ticket:1174 - Work on having build `ant test` create separate jars

git-svn-id: file:///home/svn/omero/trunk@3578 05709c45-44f0-0310-885b-81a1db45b4a6

f7a54ed6d4af3d94bf94401a598c3dacfe1958b7 authored almost 16 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

* Removed ColorFix (remnants from the removal of the Color object for #1131)

* Cleaned up legacy RGB rendering strategy and wave task (#1131)

git-svn-id: file:///home/svn/...

b871e8d3641635790f884986c143acb1b72cd633 authored almost 16 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

ticket:1150 - Changing all float fields to double

git-svn-id: file:///home/svn/omero/trunk@3494 05709c45-44f0-0310-885b-81a1db45b4a6

4d66e456d8442798d07c37fa7c36a03852818926 authored almost 16 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Modified code to set the default color of a channel. Removed usage of monochrome to set the color

git-svn-id: file:///home/svn/omero/trunk@3433 05709c45-44f0-0310-885b-81a1db45b4a6

7098c2ed57c2fa944719b8603e99db406fa820d0 authored almost 16 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

Removed unused import and fix problem with strategy.

now that we only have rgb in model, need to return a HSBStrategy not RGB strategy otherwise an im...

be3437f1ca72d60ca10a59ed44a394bd4f5bf27f authored about 16 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

Replace static string HSB by RGB

git-svn-id: file:///home/svn/omero/trunk@3083 05709c45-44f0-0310-885b-81a1db45b4a6

89c5f32ceec12e3d496b18383f81ab867dc97953 authored about 16 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

Update to September 2008 Data Model

Major update to the data model mapping files.
Minor updates to other files to fix the resulting e...

4579551eb92e638730bc0080a373f3450fd59488 authored about 16 years ago by andrew <andrew@05709c45-44f0-0310-885b-81a1db45b4a6>

Upgrading Spring to 2.5.5

git-svn-id: file:///home/svn/omero/trunk@2729 05709c45-44f0-0310-885b-81a1db45b4a6

205f7c36a0b860ec860d6c1684f7ae0998782299 authored over 16 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Initial projection and in memory pixel buffer support (#11):

* MappedByteBuffer --> ByteBuffer throughout
* PixelData is now read-write
* Eclipse .classpat...

612fc358e128f5d459127efd2f128e0b4989cae0 authored over 16 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

ticket:766 Adding sensible "conf" attributes to Ivy for OmeroBuild

* Cleaned up server/client separation
* Removed extensions (no more "core")
* Remoed qdox and...

25a558125346deb50213f1c7307daceef3c9ec21 authored over 16 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

* User context switching in thumbnail and rendering services (#874)

* Added more sanity checks (fixes #881)
* Fixes to thumbnail cache logic being user agnostic
*...

f84a2b7e87fdc4a009f4a667ecb88d25f9e663f8 authored over 16 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

More verbose message for missing channel statistics.

git-svn-id: file:///home/svn/omero/trunk@2169 05709c45-44f0-0310-885b-81a1db45b4a6

458a7af7273e060577ff45e801261c3f8fda0e30 authored almost 17 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Updating .classpath files

git-svn-id: file:///home/svn/omero/trunk@2019 05709c45-44f0-0310-885b-81a1db45b4a6

4b881810eb24b05aa1ab9e1c60e69d280b99fd30 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

StructuredAnnotations : More improvements, working on tests compilations

* sql.dir now points to sql/psql/OMERO3B__1
* Added ome.api.Search interface
* Added DetailsF...

3343f87c985e68af76e68eab637873da673510c0 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Ensures that new objects are not associated with the session causing methods to throw {{{NonUniqueObjectException}}}.

git-svn-id: file:///home/svn/omero/trunk@1983 05709c45-44f0-0310-885b-81a1db45b4a6

c404524827473a0ef981dd19a4a178d833b63b10 authored about 17 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

* Further fixes for on disk cached thumbnails (#848), this completes the ticket coverage

* Fixes for various locations that missed either Renderer reloads or insertion of unloaded objec...

c7524a38cef38464a53f9a17a5d2817acafe8c64 authored about 17 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

* ThumbnailService rework which removes the dependence on the rendering bean; we're now using the renderer directly. (#848)

* Passivation has now been turned back on for the stateful beans, this should clear up any linge...

4eafd8cf1dbd93dda0125d97bd7ffed43e083d8d authored about 17 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Due to changes in the LUT computation.

Need to rebuild the LUT when setting new values for the codomain interval

git-svn-id: file:///ho...

501082b7c98f4a00de8785f48d396b8222cb9bc9 authored about 17 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

Fixed problem if the color is black or white, the primaryColor flag was not set properly

git-svn-id: file:///home/svn/omero/trunk@1919 05709c45-44f0-0310-885b-81a1db45b4a6

11f5d1da5dce74fdb867b56b4737c9be86e04104 authored about 17 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

Added control if the channel does not have a logical channel (cf. Josh's bug report)

git-svn-id: file:///home/svn/omero/trunk@1908 05709c45-44f0-0310-885b-81a1db45b4a6

8b7b8999d47ea8119ce71c82d043a579fa4479f1 authored about 17 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

Fixed when value out of min and max, and when min=max

git-svn-id: file:///home/svn/omero/trunk@1903 05709c45-44f0-0310-885b-81a1db45b4a6

e3f2c8d15bc225b08a70c7a2784644d4ecdb4cf8 authored about 17 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

* Removed the last remenents of the OMERO rendering engine sync.

* DeltaVision image sequences are "short" not "integer" values

git-svn-id: file:///home/svn/ome...

bc07876da31df9ebe2bb16c318494ea747a606f0 authored about 17 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Optimizing away some of the mess that was left by the addition of PixelData and turning off some of the co-domain calculations that are not currently being used.

git-svn-id: file:///home/svn/omero/trunk@1850 05709c45-44f0-0310-885b-81a1db45b4a6

e8312659f03e5fe1444932651ba68b9dbbb74ab8 authored about 17 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Copy and paste rendering settings. Modify RE to map intensity values outside the [min, max] interval

git-svn-id: file:///home/svn/omero/trunk@1823 05709c45-44f0-0310-885b-81a1db45b4a6

344a76831c5745514e4c2023fca225e76bf00577 authored over 17 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

Changes and additions to enable DeltaVision pixel buffer reordering, faster pixel data retrieval and pixel type information.

git-svn-id: file:///home/svn/omero/trunk@1807 05709c45-44f0-0310-885b-81a1db45b4a6

2670edbdac509d30eddd7047cd948465e9eb7b31 authored over 17 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Rolling back to the old non-cached allocation model, fixes #769.

git-svn-id: file:///home/svn/omero/trunk@1739 05709c45-44f0-0310-885b-81a1db45b4a6

6b81834ddff9d4d36be5abe612c0d25e7d3ef61b authored over 17 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Upgraded to Spring 2.0.6, Hibernate 3.2.5.ga, and JBoss 4.2.1.GA

* Reduced multiple ivy entries per artifact
* Added flatrepository under lib/repository
* Sta...

d7a0be4ef023ebdb5f0a5029ce7a016c765310b4 authored over 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Adding resources/.gitignore files to prevent directory pruning.

git-svn-id: file:///home/svn/omero/trunk@1704 05709c45-44f0-0310-885b-81a1db45b4a6

447b8034b7c02e36822c8921e51115272c691c00 authored over 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Removing all ${artifact.*} ant properties and last versions.

git-svn-id: file:///home/svn/omero/trunk@1703 05709c45-44f0-0310-885b-81a1db45b4a6

122c4a71e62329356889978c69cc86dd6528e455 authored over 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Removing M2_REPO references from .classpath files.

git-svn-id: file:///home/svn/omero/trunk@1700 05709c45-44f0-0310-885b-81a1db45b4a6

1238194240a959e928fbac9efed3e1a09ede831f authored over 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Ivy changes: * Added licenses/ivy.xml (removed classpath.xml) * Removed all version names from .classpath & .project * Removed versions from antlib/resources/* and product.properties * Updated ome.system.Version

git-svn-id: file:///home/svn/omero/trunk@1701 05709c45-44f0-0310-885b-81a1db45b4a6

6051e3fcdd830a49940a02a9ac130805152c0801 authored over 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Ivy changes: * Deleting ivy-cache on "clean" * s/latest.integration/omero.version/ * Retrieve to [artifact].[ext] not [artifact]-[revision].[ext] * Renamed filesystem resolver * Version now configured in omero.properties

git-svn-id: file:///home/svn/omero/trunk@1698 05709c45-44f0-0310-885b-81a1db45b4a6

f1bda44167dd19acd7fa7c441509fe0dc5ded71a authored over 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Ivy: Removing pom.xml files.

git-svn-id: file:///home/svn/omero/trunk@1699 05709c45-44f0-0310-885b-81a1db45b4a6

cb7298f84e10ffa1d3c78841f49b0075684dd5be authored over 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Initial ivy commit. Not completely functional. (tools/,jars-copy,etc.)

git-svn-id: file:///home/svn/omero/trunk@1684 05709c45-44f0-0310-885b-81a1db45b4a6

eff5dffcb534d3cc0e9841f25b2ea6f412209350 authored over 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Fixes #739.

git-svn-id: file:///home/svn/omero/trunk@1659 05709c45-44f0-0310-885b-81a1db45b4a6

a546c6d548fefa751d51602ffef543ea75f6a003 authored over 17 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

ticket #730 code cleanup

git-svn-id: file:///home/svn/omero/trunk@1640 05709c45-44f0-0310-885b-81a1db45b4a6

b1687fbc91a974b77a671d2b6c09697a09a59fec authored over 17 years ago by david <david@05709c45-44f0-0310-885b-81a1db45b4a6>

removed printStackTrace() ticket #730

git-svn-id: file:///home/svn/omero/trunk@1619 05709c45-44f0-0310-885b-81a1db45b4a6

a36742249328b2529a3a9be8a9f0a7a4ec83f819 authored over 17 years ago by david <david@05709c45-44f0-0310-885b-81a1db45b4a6>

removed printStackTrace() ticket #730

git-svn-id: file:///home/svn/omero/trunk@1617 05709c45-44f0-0310-885b-81a1db45b4a6

da862274903738f91f2e4fb6ca96f07ec7ff376e authored over 17 years ago by david <david@05709c45-44f0-0310-885b-81a1db45b4a6>

removed printStackTrace() ticket #730

git-svn-id: file:///home/svn/omero/trunk@1609 05709c45-44f0-0310-885b-81a1db45b4a6

45a18c34be9ccbede898d9791722aa3390f165e0 authored over 17 years ago by david <david@05709c45-44f0-0310-885b-81a1db45b4a6>

Updated to use the new {{{Plane2D}}} enhancements brought in as part of #725.

git-svn-id: file:///home/svn/omero/trunk@1594 05709c45-44f0-0310-885b-81a1db45b4a6

24f2400c7f190b779a77bcd5105680b044546a30 authored over 17 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Further changes by Jean-Marie for #725. (Factoring out usage of the {{{geom2D}}} package)

git-svn-id: file:///home/svn/omero/trunk@1592 05709c45-44f0-0310-885b-81a1db45b4a6

2539495cf7658c64a6052d2dfd7cd2076a852a63 authored over 17 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Updating to new StatsFactory mechanisms that Jean-Marie has implemented. Helps #725 a little more. New {{{Plane2D}}} should help even further, Jean-Marie is going to synchronize the {{{StatsFactory}}} with the new {{{Plane2D}}}.

git-svn-id: file:///home/svn/omero/trunk@1587 05709c45-44f0-0310-885b-81a1db45b4a6

53240235c9bf6b4bb80b11e39cd373f93c57ee2d authored over 17 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Optimizations to avoid #725:

* Removal of "approximation" code that just delegates to Math, the extra method call overhead is...

cb26951ce2651aa7c2490156e08aadcfe758f773 authored over 17 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Large scale RenderingEngine optimizations and re-organization:

* Caching of RGBBuffer and RGBIntBuffer to avoid multiple re-allocations
* Initial steps toward...

fbd177951f927f1a2af07fc92fe0879814364b52 authored over 17 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Wholescale close() logic for binary services that's now present in all the accessible stateful services. Should resolve #462 for good.

git-svn-id: file:///home/svn/omero/trunk@1557 05709c45-44f0-0310-885b-81a1db45b4a6

02166ef77ae33aae5ea6e7825b390ffd4043dfa5 authored over 17 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

first pass added package files to common

git-svn-id: file:///home/svn/omero/trunk@1407 05709c45-44f0-0310-885b-81a1db45b4a6

4d8a153462f0d460426dcbfb82aba5ee35feb35c authored over 17 years ago by david <david@05709c45-44f0-0310-885b-81a1db45b4a6>

* #421 `AbstractBean` removed. Refactored all *Beans and *Impls.

* #564 Fixed bioformats-omero/.../StatefulServiceTest
* #599 `IAdmin.removeGroup` now behaves p...

fdf67000f84ceb8e1b53845834be9f6bf1f87197 authored almost 18 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

* Now handling color mapping better (#638)

* Allowing thumbnails to be larger than their source image (#626)
* Provide functionality to ch...

a2d0b29af4c26ba7f0f7a8b4e3a6a34cad3eaf49 authored almost 18 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

#411 Upgrading groovy to 1.0

git-svn-id: file:///home/svn/omero/trunk@1298 05709c45-44f0-0310-885b-81a1db45b4a6

1417eb595cdbfb871dea6ac6a1b2273cf38a48e1 authored almost 18 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Completing the #554 transition.

git-svn-id: file:///home/svn/omero/trunk@1168 05709c45-44f0-0310-885b-81a1db45b4a6

88f07a7068a1ad18c0d5afb5f838af1fe07fd835 authored about 18 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

[svn:keywords] Id,Date,Revision,URL for *.java and Id for *.xml

git-svn-id: file:///home/svn/omero/trunk@1167 05709c45-44f0-0310-885b-81a1db45b4a6

dcdac089be1d78e494e24ecd9a07264f6d6708c6 authored about 18 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

[COPYRIGHT] Adding copyright statement to all *.java files missing one.

git-svn-id: file:///home/svn/omero/trunk@1166 05709c45-44f0-0310-885b-81a1db45b4a6

142590162e5588369ede1e945d60aa61d81ea893 authored about 18 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

[ECLIPSE CLEANUP] Imports, brackets, annotations, casts, serialVersionUIDs!

git-svn-id: file:///home/svn/omero/trunk@1165 05709c45-44f0-0310-885b-81a1db45b4a6

0ccca13a1d41b67fb2e1de0ec632d949658069ff authored about 18 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

[FORMATTING] Added docs/styles/OMERO_Eclipse_Code_Style.xml and formatted

git-svn-id: file:///home/svn/omero/trunk@1164 05709c45-44f0-0310-885b-81a1db45b4a6

a61499bfb691d5e1a19c0cfa32e9a3cb06231c2c authored about 18 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

[LICENSE CHANGE] LGPL 2.1 --> GPL 2

git-svn-id: file:///home/svn/omero/trunk@1158 05709c45-44f0-0310-885b-81a1db45b4a6

fd9ef370c7f28696de20157a6a18c0aecbe37b43 authored about 18 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Added omero.data.dir=/OMERO/ property

git-svn-id: file:///home/svn/omero/trunk@1125 05709c45-44f0-0310-885b-81a1db45b4a6

f570f21cd14525045e24c28e9cfdc982c93fb732 authored about 18 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

[MERGE] r1062:1111 branches/omero_ds_fix-->trunk

git-svn-id: file:///home/svn/omero/trunk@1112 05709c45-44f0-0310-885b-81a1db45b4a6

938dec2d7d34dc795bfb6e94a889f438404d5fe6 authored about 18 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Should now have *finally* squashed #462. Due to java.nio.channels.FileChannel fun, we've had to move the "close()" closer to the retrieval of the mapped byte buffers in the rendering strategies.

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004d34d4c81b092dc996c6df1225774673fef1ee authored about 18 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Further changes to ensure that the channel bindings and the quantum strategies are kept in sync.

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53bdeb2e0dc4c284e278ffe346ffc0e317c66d0d authored about 18 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Make sure that the quantum settings are propagated after a "revert/reset" of the rendering settings.

git-svn-id: file:///home/svn/omero/trunk@1074 05709c45-44f0-0310-885b-81a1db45b4a6

970569724278ee511939e9e564ed7f6ba11d737b authored about 18 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Making the initial changes required to fix #461 and fixing a typo in the Renderer.

git-svn-id: file:///home/svn/omero/trunk@1068 05709c45-44f0-0310-885b-81a1db45b4a6

498cdbac9d62b013354efe7a02819ad6692e7481 authored about 18 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

#443 Fixed/checked distribution tasks: setup, setup-db, add{group/user}, deploy, update

git-svn-id: file:///home/svn/omero/trunk@1057 05709c45-44f0-0310-885b-81a1db45b4a6

26dc2f68ca1494efb933e6f744854e4d051340f1 authored about 18 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Further Bean instantiation fixes and removal of some null value checks within computeLocationStats().

git-svn-id: file:///home/svn/omero/trunk@1051 05709c45-44f0-0310-885b-81a1db45b4a6

d82e2989fdca59132aa85d2962dfea37e9613488 authored about 18 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

* Rendering engine Mr. Fixit patches that fix #456, partially #457 and #459.

* The partial fixes to #457 move computeLocationStats() to resetDefaults(), whicih is really wher...

fc1015281f75f941af83814f911de695ae57247e authored about 18 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Huge rendering engine optimization and patch that closes and/or implements #190, #260, #449, #450, #451 and #453. Further information on rendering engine optimization can be found on the RenderingEngine Wiki page.

git-svn-id: file:///home/svn/omero/trunk@1048 05709c45-44f0-0310-885b-81a1db45b4a6

195979a963230c71d74589be4356af520fb221d4 authored about 18 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

#428 Fixing stateful flushing. (By moving to Spring 2.0 See #238)

git-svn-id: file:///home/svn/omero/trunk@1039 05709c45-44f0-0310-885b-81a1db45b4a6

ee1b885ac7c646a17df27bdce30ed3af6954b402 authored about 18 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

#334 Merged RenderingEngineImpl into RenderingBean (also for #212 and #326)

git-svn-id: file:///home/svn/omero/trunk@1024 05709c45-44f0-0310-885b-81a1db45b4a6

72a1673d299c625bba580feb9dde4c853a3bd381 authored about 18 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

#330 Initial testing and minor typo in REImpl.

git-svn-id: file:///home/svn/omero/trunk@917 05709c45-44f0-0310-885b-81a1db45b4a6

bc521853e8d57e502498f31b24b5e319fcb1f473 authored over 18 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

should fix quantum strategy and codomain bug

git-svn-id: file:///home/svn/omero/trunk@913 05709c45-44f0-0310-885b-81a1db45b4a6

e384f7e00bd7a1ca631b255c337482a50ec6264d authored over 18 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

#197 Merged /ejb and /server via AOPAdapter (also eases #306)

git-svn-id: file:///home/svn/omero/trunk@903 05709c45-44f0-0310-885b-81a1db45b4a6

61aceeaf63b198d90fae226df0353c63faf57900 authored over 18 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

updated doc

git-svn-id: file:///home/svn/omero/trunk@879 05709c45-44f0-0310-885b-81a1db45b4a6

84e767f8a7db43d0603c14b95ff752c12cff6028 authored over 18 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

Added documentation

git-svn-id: file:///home/svn/omero/trunk@878 05709c45-44f0-0310-885b-81a1db45b4a6

42b822dc8e4f20ff9170521393e965b55724815e authored over 18 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>