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github.com/ome/omero-renderer

Gradle project containing rendering functionality for OMERO
https://github.com/ome/omero-renderer

Import *version.xml into global.xml to reduce clutter

55777b877596ffcd88b75c4d94d3810a7d543133 authored over 9 years ago by jmoore <[email protected]>
Add gitversion.xml to all build.xml import blocks

Without gitversion.xml imported, any component-level
build like ant -f components/tools/OmeroJav...

4f72cbb8c08062ba9e3019c2ac8f4c650618970d authored over 9 years ago by jmoore <[email protected]>
Cleanup Ivy dependencies between components

797c2a0cabf2e700133512a1fd6dbacc6926fbff authored over 9 years ago by Sebastien Besson <[email protected]>
Remove cache size.

The size was too small.

689418c6dbf2e1da92ae59a6d19c9594d7ba3adb authored over 9 years ago by Jean-Marie Burel <[email protected]>
Remove usage of Range.

2bc95340e3187b6db860822247e475b4f54eb2e9 authored over 9 years ago by Jean-Marie Burel <[email protected]>
Remove usage of loop to determine interval.

42c507d9d9ea32f84698cd7a5af7ba965b2caa78 authored over 9 years ago by Jean-Marie Burel <[email protected]>
Fix bug with comparing pixels types

24e2439401155c249da84d1a18e10746e642d25e authored almost 10 years ago by Chris Allan <[email protected]>
Also clamp to the pixel type bit width

df69e91ec99e3d4c85772fdbf53e2e3dcd5d9065 authored almost 10 years ago by Chris Allan <[email protected]>
Add test case for bit width clamping

b7161f264a3571efde2bbfd5a1a5044c82212b03 authored almost 10 years ago by Chris Allan <[email protected]>
Add test case for significant bits

83290af93c7484ac9e8aacf4f2be74e34a6c0e12 authored almost 10 years ago by Chris Allan <[email protected]>
Add test case for initial pixels range expectations

4c47d3a1f891d7459d199d07ac79231123aeca77 authored almost 10 years ago by Chris Allan <[email protected]>
Use significant bits if they are available

1eafe37c14f20e1081ac51914173a3b16fd5f154 authored almost 10 years ago by Chris Allan <[email protected]>
Simplify init.

9f2bfef67a4cd10211b8e429d938c1b837e04634 authored almost 10 years ago by Jean-Marie Burel <[email protected]>
Remove unused code.

6e8f380eec59e6d20b72891dce97a916f33b7059 authored almost 10 years ago by Jean-Marie Burel <[email protected]>
Synch re and b-f.

c0ff4cb908fed1947d95209afbb77ba3d59ae377 authored almost 10 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #3155 from jburel/re-changes

Re changes

069715337f84c3a11d58e68293cbdb17e4b06f82 authored about 10 years ago by jean-marie burel <[email protected]>
Merge 'origin/develop' into deprecate-rnd-methods

Conflicts:
components/blitz/src/loci/ome/io/OmeroReader.java

7c709d0fa4df68ce109edcb3c3e980edb2b8d0bf authored about 10 years ago by jmoore <[email protected]>
Move UnitsFactory to ome.model.units classes

a55454ff6465fdf259d14443ee751519247a6b80 authored about 10 years ago by jmoore <[email protected]>
Passing compilation of units migration

With this change, the Units* enum types used by
the new unit classes are all proper enums in eac...

cdfb120303ab321b7b5231ec9ec68e580142f7fa authored about 10 years ago by jmoore <[email protected]>
Reduce the check: do not limit to min/max.

134760e3000ed8e453b1e3240b9acd0bf01aadc2 authored about 10 years ago by Jean-Marie Burel <[email protected]>
Convert all Length fields in ome and omero models

This should bring the OMERO classes up-to-date with regard
to the Bio-Formats length unit change...

f8fb7fa48364e5863a3259253750f5f6ad1d411f authored about 10 years ago by jmoore <[email protected]>
Add 2 UnitsFactory implementations

Like the ColorFactory classes, one in rendering and one in blitz,
the UnitsFactory implementatio...

424c83f93a0a20960bee763f2e5e15e84e955380 authored about 10 years ago by jmoore <[email protected]>
Do not allow to set window to full range for float/double.

5a795cd323b383c70641f9fe37053a094a533e4e authored about 10 years ago by Jean-Marie Burel <[email protected]>
Do not throw exception when interval not valid.

774b2a0b63d75a60e428477780d41f239df00b0e authored about 10 years ago by Jean-Marie Burel <[email protected]>
Remove deprecated methods.

8c38b01224259e10cd57f308da68bc5cd741b6a8 authored about 10 years ago by Jean-Marie Burel <[email protected]>
remove check

49c0c0004bea16b1efae6910e0f240989cf0fb49 authored about 10 years ago by Jean-Marie Burel <[email protected]>
Add timeout to cache.

079a93af79d7caddffb558da31e2907cc69d29bd authored about 10 years ago by Jean-Marie Burel <[email protected]>
Use cache and range for 32-bit.

708444d6341130d42cb1ba64c71cc55308b06671 authored about 10 years ago by Jean-Marie Burel <[email protected]>
Modify size of the cache.

f526381463cd7dffb922df7767a007b302dc0a1c authored about 10 years ago by Jean-Marie Burel <[email protected]>
Use guava cache and map using a range.

5efc703bfb181c6d2ec13cffe9b332019f800899 authored about 10 years ago by Jean-Marie Burel <[email protected]>
Cache using guava.

7c453df5a52e6414be19b765858218aab5e90094 authored over 10 years ago by Jean-Marie Burel <[email protected]>
Split float and double.

46450c9ef990a37c610a673005880e0ad7b00e7c authored over 10 years ago by Jean-Marie Burel <[email protected]>
Use Math.pow to improve understanding.

9373b60de11088ff4075badd32580218eb2ba48e authored over 10 years ago by Jean-Marie Burel <[email protected]>
Remove tabs.

3dbdbb314b6b8f7ea98c949fdfbccb7feb91a228 authored over 10 years ago by Jean-Marie Burel <[email protected]>
Remove unused logger.

55147fce9ed290086e6aef1142db5a5a8c36de05 authored over 10 years ago by Jean-Marie Burel <[email protected]>
Remove commented out code.

d8512531bdfe7cb2ad5be00cd08b286a611f8779 authored over 10 years ago by Jean-Marie Burel <[email protected]>
Initial commit to add support for float.

5e417a192705111cfc455a0ac0f5d193134a35dd authored over 10 years ago by Jean-Marie Burel <[email protected]>
Remove unused ref to logger.

43d70fde53b670f06c160023e026c7686ea12613 authored over 10 years ago by Jean-Marie Burel <[email protected]>
Fix format string in Quanitization

40d2ac8d9b70cc7bce7998b76a8416996f7edd23 authored over 10 years ago by jmoore <[email protected]>
Merge pull request #2955 from jburel/32-bit

32 bit

fc82fe98cd86ee2693a6a003bbade9930e70a8eb authored over 10 years ago by Josh Moore <[email protected]>
Merge pull request #2954 from jburel/pgi

min-max set

1c2f37d40228f2b755144e7e07a99ab9053be37e authored over 10 years ago by Josh Moore <[email protected]>
Remove logger used while investigating the issue.

4e341c01595317d39d70c3fb409488889786f6b4 authored over 10 years ago by Jean-Marie Burel <[email protected]>
Fix possible NPE if object not loaded.

729c6bce8b6f68c92af58dae7c0a7ecc76e2b5e1 authored over 10 years ago by Jean-Marie Burel <[email protected]>
Review mapping and store mapped values.

131da050920340975445dc8909929bf07e42bf89 authored over 10 years ago by Jean-Marie Burel <[email protected]>
Remove whitespace.

c5c6c05211f923269d5349d2c06c52425e749e3e authored over 10 years ago by Jean-Marie Burel <[email protected]>
Do not build LUT for 32-bit images.

88276848026a0f36e6e69844f9191c5d183e223d authored over 10 years ago by Jean-Marie Burel <[email protected]>
Remove duplicated code.

5839fbfe735a55939e7234fd28385b2731e47bce authored over 10 years ago by Jean-Marie Burel <[email protected]>
Add 32-bit support.

50dbd65d27c5eb5c2a0ff1439c8c249180e7c8f8 authored over 10 years ago by Jean-Marie Burel <[email protected]>
Set pixels range for 32-bit.

0723b338ae6915ea1b24fad5025382d4a9f6d10c authored over 10 years ago by Jean-Marie Burel <[email protected]>
Always use the global min and max for start and end by default.

3e72fa95344f675ca7546466da4d5c90067e9316 authored over 10 years ago by Jean-Marie Burel <[email protected]>
Add version.xml to components

By importing version.xml, executing the subprojects
directly with an has all the version informa...

83559fec354815f62283b62fde4c0c9e57f89569 authored over 10 years ago by jmoore <[email protected]>
Add pom, sources, and javadoc artifacts

1f281104b2dbd322f1047da96b959c4e6098caf2 authored over 10 years ago by jmoore <[email protected]>
Removing unneeded java.lang. from Float & Double

3e9d89fd997a6c98b61d5508328027e6e668eec1 authored almost 11 years ago by Andrew J Patterson <[email protected]>
Update Color processing and Rendering

35abf392dc4d6a8cdfb139d7d1fe3bba5ceaf70a authored almost 11 years ago by Andrew J Patterson <[email protected]>
omeis: Remove obsolete CVS directory

85acb24102fa73df27c987e874162ca77092d086 authored almost 11 years ago by Roger Leigh <[email protected]>
If invalid interval set it to range wrt pixels type

65556248016967e9718e03a12e7efcc4f4c49448 authored about 11 years ago by Jean-Marie Burel <[email protected]>
Set global min/max according to pixel type. (see #11840)

a7a378c60b10890b019cc4fffb92957ac7dd0de8 authored about 11 years ago by Jean-Marie Burel <[email protected]>
Remove unused integration.testng.xml files.

56c3d81f4bfb751c2ba32fa0066775c5d3c8669c authored about 11 years ago by Blazej Pindelski <[email protected]>
Fix alignment between unit and integration XML.

a0973c78fd60992f5d8db0ad81a7e44fb7f93463 authored about 11 years ago by Blazej Pindelski <[email protected]>
Merge pull request #1440 from chris-allan/no-big-image-pgi

Disable location stats calculation for big images (Fixes #11420)

9b6ea908b855cbcd97d68aaf23be745a130f21f7 authored over 11 years ago by jean-marie burel <[email protected]>
Merge pull request #1412 from rleigh-dundee/java6-minversion

Make JDK 1.6 the minimum supported version

064f00952e1ea5081c9c9f1104528bb36e29d30c authored over 11 years ago by Josh Moore <[email protected]>
Disable location stats calculation for big images (Fixes #11420)

f65f1d217c400aa465556147ac3d8bed222fb788 authored over 11 years ago by Chris Allan <[email protected]>
eclipse: rendering compilance version is 1.6

Missed in the initial commit due to being 5 rather than 1.5.

4cc15a059cf0139a7f02b02842ae7a45e2285fd4 authored over 11 years ago by Roger Leigh <[email protected]>
eclipse: 1.6 is the minimum supported java version

61f519504dfb417a2866bf29ead3c02b6c6e050c authored over 11 years ago by Roger Leigh <[email protected]>
Make unit test packages in "rendering" explicit.

5aeccef86d325e091dc644a4af3f8d381ac48a91 authored over 11 years ago by Blazej Pindelski <[email protected]>
Merge pull request #1013 from jburel/tileSize-develop

Tile size develop

4d26c90a04226e2186d380e0b24bf7da72227ab9 authored over 11 years ago by Josh Moore <[email protected]>
Add missing Javadoc.

e5366259984f629c124e1ba36a11ddd1c7f58e63 authored over 11 years ago by jburel <[email protected]>
Initial commit after using SLF4J Migrator.

7cef58301f9b5ee076ced1fc4a1978a798a8498f authored over 11 years ago by Colin Blackburn <[email protected]>
Add PyramidService.getResolutionDescriptions method (See #9813)

Provide a list of ResolutionDescription objects which should
eventually represent the entire geo...

e557dc46719d57ad3dd11e1547c5cccc0b71a492 authored almost 12 years ago by jmoore <[email protected]>
Allow greyscale rendering when no channel binding active. (See #8888)

This commit ensures that like the HSBStrategy rendering with the
GreyScaleStrategy while no chan...

1dd5c6b2f3494e685bd8fb14ad7ef6d3b65066f1 authored over 12 years ago by Chris Allan <[email protected]>
Fix issue when no stats available (see #9124)

Problem only visible when determining the location stats.

7fd138472aadcbf27af683126774f02f08ff6eaa authored over 12 years ago by jburel <[email protected]>
Clean code.

71e2a08edab4415d1717c293c642c380786d1718 authored over 12 years ago by jburel <[email protected]>
Remove unused import.

9f8b80e5c93109ebbd4dbf2b57f04aa196c195b2 authored over 12 years ago by jburel <[email protected]>
Modify RE if no stats created so image can be viewed (see #9124)

07e1ad60048d0d72f53b2e2718079e2d00bb2af0 authored over 12 years ago by jburel <[email protected]>
Fix min/max calculation, values not correctly set when dealing with tiles (close #5555)

049676641f05e5f275ae056cf004aa4563cfe544 authored over 13 years ago by jburel <[email protected]>
Fix issue when going down in resolution when model is greyscale (close #5689)

94a20bb459e418b6d5b83a54b271f94fd5120022 authored over 13 years ago by jburel <[email protected]>
Set the size of the window to full range (depending on pixels Type)

when min = max e.g. PCT (close #5567)

19599a86f8306a1d193854904c55641c9d669271 authored over 13 years ago by jburel <[email protected]>
Move to region based location statistics calculation.

7bd1cb3a4e4c19716d94a673fc2261996d0f4f25 authored over 13 years ago by Chris Allan <[email protected]>
Fix logging in Plane2D.

4fbb5cc940c8ed7bfe87a4c349c0e166d992fca8 authored over 13 years ago by Chris Allan <[email protected]>
Ensuring that rendering engine tile sizes are correct. (Fixes #5225)

1d4e1ca58b93395bc33b2721f58b15ed708921a7 authored over 13 years ago by Chris Allan <[email protected]>
Resolve issues with the rendering of non-maximum tiles. (Fixes #4984)

c117f5d9771f874e7269076d3ecc1a7e00819d2a authored over 13 years ago by Chris Allan <[email protected]>
Added support for resolution levels. (Fixes #4972)

Support is now available through the raw pixels and rendering engine
services for access to sub-...

302ceeca38b51acd6f8527bfdf543f5bfd8b7a5b authored over 13 years ago by Chris Allan <[email protected]>
Link up tile retrieval with rendering engine. (Fixes #4971)

In addition to linking up the tile retrieval logic (which uses the
pyramid pixel buffer) the var...

a4fae73ba65df5448197b55e01281c25a3c2dc02 authored over 13 years ago by Chris Allan <[email protected]>
Pushed pixels pyramid API down a step further add getResolutionLevel().

a6b8dd68db0aeb5e846d36b9cc87c88a1540dd28 authored over 13 years ago by Chris Allan <[email protected]>
Move of PixelData from romio to model.

7c529d2c39d0e0943250db401037088c02482a79 authored over 13 years ago by Chris Allan <[email protected]>
Add support for region out of bounce (close #4310)

647b2da90e3c5af4107f736cba4cc976fd914878 authored almost 14 years ago by jburel <[email protected]>
Add test for render region and stride, fix bugs (close #4280)

d7ece8c0668394eb140ae48ccd9ff0c1409d8375 authored almost 14 years ago by jburel <[email protected]>
Added support for stride in renderer and pixels buffer (only for getPlaneRegion method)

(close #4253)

bc3e9a9a1bdea4b89066f84b4e125cf3bd1b4e0f authored almost 14 years ago by jburel <[email protected]>
Merge branch 'feature/renderingZoom' into develop

e6f300f983f745c9769a2e984c9533ef90d73eae authored almost 14 years ago by jburel <[email protected]>
Added method to set the zoom level (close #4021)

a318102e7c92884e9d419ad4bf878cbfea88bb1f authored almost 14 years ago by jburel <[email protected]>
Added method to set the zoom level (close #4021)

5dfec09b0753926d0b82a254892bc1fa4407d816 authored almost 14 years ago by jburel <[email protected]>
Work to render rectangular region of a given plane, necessary for big images (close #3783, see #4020)

27adb7dc2c74ecfd442ff254bce208c60afaba70 authored almost 14 years ago by jburel <[email protected]>
Reverting r7441 and adding some more sanity checks to the Renderer. With r7441 it's possible that Images without channel statistics will get to the Renderer via the ThumbnailBean and/or RenderingBean. This can cause problems and the previous strategy of assigning min/max PixelType range also causes the user to have to trigger a "resetDefaults()" if he/she attempted to view the Image while it was importing. We're sure that Jean-Marie made the changes for a good reason and we may need to review this again if there are further bugs that expose the issue outlined in #2545. (See #2545 and #2753; Fixes #3011)

git-svn-id: file:///home/svn/omero/trunk@8288 05709c45-44f0-0310-885b-81a1db45b4a6

5471c1b2531ead75ee49e32a7c86acacab3e0c21 authored about 14 years ago by cxallan <cxallan@05709c45-44f0-0310-885b-81a1db45b4a6>
Removing more duplicate test runs from test-server (See #1736)

git-svn-id: file:///home/svn/omero/trunk@7796 05709c45-44f0-0310-885b-81a1db45b4a6

63da813370dd7b567f894416c3fda72ec8f5d7c7 authored over 14 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
Fixing component specific TestNG package descriptions to avoid tests from other components being run in the suite. (See #2067)

git-svn-id: file:///home/svn/omero/trunk@7660 05709c45-44f0-0310-885b-81a1db45b4a6

5bae1b01dc3ee3682ca194d68b59a631f41c5f6b authored over 14 years ago by cxallan <cxallan@05709c45-44f0-0310-885b-81a1db45b4a6>
Improve mapping

git-svn-id: file:///home/svn/omero/trunk@7446 05709c45-44f0-0310-885b-81a1db45b4a6

4804cd7ede6703b5a3de2009af1620f6d8987bc5 authored over 14 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>
Improved determination of range to handle images like the one described in #2511 (Closed #2511)

git-svn-id: file:///home/svn/omero/trunk@7442 05709c45-44f0-0310-885b-81a1db45b4a6

86dc2db6d0ed5b53640c136ba3b6f16d582ae605 authored over 14 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>
improve determination of color cf. #2528

git-svn-id: file:///home/svn/omero/trunk@7383 05709c45-44f0-0310-885b-81a1db45b4a6

c29e3feea0e6e8ab21bfca954cf69e02039ea72b authored over 14 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>
improve color determination (cf. #2537)

git-svn-id: file:///home/svn/omero/trunk@7359 05709c45-44f0-0310-885b-81a1db45b4a6

a1380c9ca4c4e7b381d334cfb01b9e52ea287283 authored over 14 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>
Class cast exception cf. #1646

git-svn-id: file:///home/svn/omero/trunk@7340 05709c45-44f0-0310-885b-81a1db45b4a6

f05410849de14e12ccd440616a98a2c45875572b authored over 14 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>