github.com/sagemath/homebrew-science commits | Ecosyste.ms: OpenCollective

edirect: secure url(s)

6f2d086e7c79f033f26c02e40479675859659973 authored over 7 years ago

fastml: secure url(s)

89aa068e9e855b866e8c6c5f2fe1fb3a4e785f3f authored over 7 years ago

galfit: secure url(s)

fc77e1f452ffcd4316dc03d2192e08fdf02caa74 authored over 7 years ago

fastq-tools: secure url(s)

22c9244e779c25557ba5451cd39299baf8e25fbc authored over 7 years ago

glpk448: secure url(s)

ddb460eca92fd800cebcfd9aebdee25b4b122326 authored over 7 years ago

glimmerhmm: secure url(s)

f6a1224e0b129cc06ef818aa0338fdd521331c85 authored over 7 years ago

gmtk: secure url(s)

5f9b5cfa2eca89d1c0215c572f3e96db93d4e533 authored over 7 years ago

glimmer3: secure url(s)

4baad62cc81868c2c9b8a0cc5e634447422cadda authored over 7 years ago

getdp: secure url(s)

f5de2f125a1b8184c52b1c443be4c3a4156b21e4 authored over 7 years ago

gap: secure url(s)

b70e30c38942af190bb2fc92793718e824245320 authored over 7 years ago

gaemr: secure url(s)

ffd357713dd7dd83073be02579b3434fa1525ecb authored over 7 years ago

g2o: secure url(s)

78f4f2ad229c1e3faf76be3dbafa99f89a46dc84 authored over 7 years ago

flash: secure url(s)

d9b1845d8d93c7bc3edbf73103ed237c486e593d authored over 7 years ago

fcgene: secure url(s)

2d3afa4e1767511c3d0081286c80d69162284e8b authored over 7 years ago

fastuniq: secure url(s)

3f150d02fcc53d91f7d038e984ae25a7a0b10723 authored over 7 years ago

fastqc: secure url(s)

f789c3ba2a65d0b4bc03e0cec929d16fd684acd4 authored over 7 years ago

exonerate: secure url(s)

7a245d56d5fc1190688d24cbd38918376413057c authored over 7 years ago

exabayes: secure url(s)

2ad899945cb27638dba59e73b5118b551e467551 authored over 7 years ago

ess: secure url(s)

12b6928dae814e3ddb24371653a2be53fa7d5aff authored over 7 years ago

allpaths-lg: secure url(s)

be0e18c78f50e4a19f45aa503a1494c33aef0218 authored over 7 years ago

deeplearning4j-cli: secure url(s)

73bcbe7386d4c5f8b0f68c1b1015e75bc2e0a0e9 authored over 7 years ago

adol-c: secure url(s)

a8ff9ae36558769de7bf0ed4e5e0f14a148d8078 authored over 7 years ago

abinit: secure url(s)

d793217b35a15f1151a34e21270fe710184a180d authored over 7 years ago

ccfits: secure url(s)

ef674cd86c110b817650a56af9624a79439d2778 authored over 7 years ago

diamond: secure url(s)

207668b6a7955c429dc13d1c4c63633f2cbde474 authored over 7 years ago

e-mem: secure url(s)

6bead3f4af54a876548f55dafe6d6efcda93b9fe authored over 7 years ago

ate-pairing: secure url(s)

94509f200fb965f2c0bf7d62c38950d7190a6757 authored over 7 years ago

dgtal: secure url(s)

e210f01e3bdc4bd4c64d153a7a7499dfaff21b78 authored over 7 years ago

dadadodo: secure url(s)

8c45ad9ec1e0e4018917e60925f4169e043d10f4 authored over 7 years ago

cusp: secure url(s)

e6d0bfdcfe6f702faf5d6573a618e3fd48eae4ea authored over 7 years ago

cube: secure url(s)

f631196fcbbee7c3dd571622f624b2da18807890 authored over 7 years ago

concorde: secure url(s)

b8336f07a6868a9dcf2ac417d2cd560e72d910b9 authored over 7 years ago

cddlib: secure url(s)

a9b9bc22fee3ac485b6c06e2d7b756d1a23a1aba authored over 7 years ago

bwtdisk: secure url(s)

0e461f4ed39a745a567a1d54ac0b400239f31c35 authored over 7 years ago

bamutil: secure url(s)

4e8b3f44bd2d05ed8317cedc8c48c4b7852c9b59 authored over 7 years ago

atompaw: secure url(s)

a1b84a6854baca15b6e85ffd553b386ed4534f62 authored over 7 years ago

aribas: secure url(s)

1cd3aee04fa19ce02b8030a0e0f191bc93a7cdf2 authored over 7 years ago

ann: secure url(s)

5036b9eb9444756cb72dd2e8454c2e7f4625a62d authored over 7 years ago

amos: secure url(s)

b8747ea4b00af40fc6f42b6a93fc2ba92f78812f authored over 7 years ago

README.md: update URLs

be79835c1f7bab74bbfb403f322697bc71b4e336 authored over 7 years ago

breseq: update 0.31.1 bottle for Linuxbrew.

4bd5a86bd7e6709a5291d73ff95107b443d51d6a authored over 7 years ago

breseq: update 0.31.1 bottle.

190ed7a4808723a3560888807ecc8aedc2d8ae20 authored over 7 years ago

breseq 0.31.1

Closes #6388.

Signed-off-by: Michka Popoff <[email protected]>

bb7d380205992e531494eadd5a88cc5e0575ac91 authored over 7 years ago

igv 2.4.2

Closes #6385.

Signed-off-by: Michka Popoff <[email protected]>

0770ef86cb9542a64ab2c2f428834e2314581c5a authored over 7 years ago

quicktree: update 2.1 bottle for Linuxbrew.

fc0d10553571fde2dc6e30fa1b0207c3e26f1de5 authored over 7 years ago

quicktree: update 2.1 bottle.

e3d188301aba04735e14831ad4804662fe1a5d86 authored over 7 years ago

quicktree 2.1

Closes #6384.

Signed-off-by: ilovezfs <[email protected]>

c871db9b53f096124f1f5a12be672941e63018f2 authored over 7 years ago

anvio: update 3 bottle for Linuxbrew.

5a7de08093d029daa4e686619bcc974b5551a056 authored over 7 years ago

anvio: update 3 bottle.

aa03c70607d8c1268e93bdccb61bd22ec11a6b14 authored over 7 years ago

anvio 3

Closes #6375.

Signed-off-by: Shaun Jackman <[email protected]>

5ff486da68d73983ffa9c86aa19a9b7d7835322e authored over 7 years ago

yices: update 2.5.4 bottle for Linuxbrew.

d1ee259d22a958d58ac60f50ca13d2d1c9e4d62d authored over 7 years ago

yices: update 2.5.4 bottle.

995d622649995ea407a9ffa6f36ef71c6a81ebab authored over 7 years ago

yices 2.5.4

Closes #6381.

Signed-off-by: ilovezfs <[email protected]>

752a55fbfb2e1cbb3dfbf718d57a82e7eb9b8380 authored over 7 years ago

mapsembler2: update 2.2.4_1 bottle for Linuxbrew.

1eeae40e9a7c10f8eaa51b523243929c8a3490a1 authored over 7 years ago

mapsembler2: update 2.2.4_1 bottle.

c2dd8e40097353d6be2c7f7af8af64c67f05d9b0 authored over 7 years ago

mapsembler2: bump for gcc-5

Closes #6377.

Signed-off-by: Shaun Jackman <[email protected]>

89e3f8247f0467f6a5e478eca60db079e688adb6 authored over 7 years ago

sdsl-lite: update 2.1.1_1 bottle for Linuxbrew.

8c82b03bb5ebeffde276ad0c056dfebfa222364e authored over 7 years ago

sdsl-lite: update 2.1.1_1 bottle.

dbed5d5dab119b4f091740f583740c0223e75738 authored over 7 years ago

sdsl-lite: bump for gcc-5

Closes #6378.

Signed-off-by: Shaun Jackman <[email protected]>

a7d46942283706312f6ab33f35cef29ec0914871 authored over 7 years ago

kat: bump for gcc-5

8bfe7e7499ea89fbd2744d09539904624dd57626 authored over 7 years ago

kat: update 2.3.4_1 bottle for Linuxbrew.

a9d5a889cebd8367f67b0be0ac81b6e2f07c7fd3 authored over 7 years ago

kat: update 2.3.4_1 bottle.

412b53835757c1b7f28ac9eb4232c46a7a2db9c5 authored over 7 years ago

Revert "kat: Fails with gcc-5 on Linux"

This reverts commit db949c3ef88db85951b8f8347463b69a01ea2faa.

2f3f8f4900aebe357c175beee66911a282aece14 authored over 7 years ago

methpipe: Add tag bioinformatics

9683b02ec8d4319598e6ccf7fb045d46e48325ac authored over 7 years ago

abinit: update 8.4.4 bottle for Linuxbrew.

f4225d1060e358cd77d1749424cf43099955fba0 authored over 7 years ago

abinit: update 8.4.4 bottle.

8f6095b65ba6e65169bccbb2ab11c44427eb30f0 authored over 7 years ago

abinit 8.4.4

Closes #6329.

Signed-off-by: ilovezfs <[email protected]>

d22dd0a42a63a4af860137362dd4b75276c432d1 authored over 7 years ago

lrsim: update 1.0 bottle for Linuxbrew.

6aec9daba1a82693c8f21b782dedd0626b631ca6 authored over 7 years ago

lrsim: update 1.0 bottle.

4f344375de55471842a1c934367e456e5212257c authored over 7 years ago

lrsim: build Math::Random with brew's perl

Closes #6371.

Signed-off-by: Shaun Jackman <[email protected]>

f4cb096432a06393904261a34f3596a4725513fa authored over 7 years ago

gap: update 4.8.8 bottle for Linuxbrew.

04a509baa5729a708cc0e12b0f2ccd5d43bd9b3b authored over 7 years ago

gap: update 4.8.8 bottle.

cf8a2d2593685b9e313cd7751128ebb737b475a9 authored over 7 years ago

gap 4.8.8

Closes #6327.

Signed-off-by: Michka Popoff <[email protected]>

d089197fd6ca37e9a040178be0246637abead700 authored over 7 years ago

gdcm: migrate to homebrew-core (#6330)

7b59776331e333d25bd9ff751b45645d1986d78b authored over 7 years ago

biomake: update 0.1.2 bottle.

add2a30007911f2058ef501995a55ad7b6370f6c authored over 7 years ago

biomake: update 0.1.2 bottle for Linuxbrew.

7beb2b95d67820673dd14a07493af131e3603930 authored over 7 years ago

biomake v0.1.2

Fixes https://github.com/evoldoers/biomake/issues/44

Closes #6350.

Signed-off-by: Michka Popof...

4d89ff67dd1bd540139fd20228f0fa3b1e9e9f19 authored over 7 years ago

nest: update 2.12.0_3 bottle for Linuxbrew.

de543b1989913ab7b7d04c1a0ee9a61fa62a59ec authored over 7 years ago

nest: update 2.12.0_3 bottle.

2d9f64ad0dff6210db6727422b22c188d9f8f3b5 authored over 7 years ago

nest: fix audit #5470

Closes #6353.

Signed-off-by: Michka Popoff <[email protected]>

284cc3e51b6a1601f053e359bf2b0174b1c798e8 authored over 7 years ago

nonpareil: update 3.1.1 bottle for Linuxbrew.

4eae9e8e83c9a6108b03aeda6ccbb7e9462bcfe9 authored over 7 years ago

nonpareil: update 3.1.1 bottle.

4eca56009991c849a6464e6dcaee5bf22ffdd42b authored over 7 years ago

nonpareil 3.1.1

Closes #6364.

Signed-off-by: ilovezfs <[email protected]>

bf41e41eb5a38d0db06c3f03c9f744296ab2ba76 authored over 7 years ago

htslib: update 1.6 bottle for Linuxbrew.

4cef558b6c30c0bd6ad7d5988b0885aa35081a9d authored over 7 years ago

htslib: update 1.6 bottle.

afa4678dc3f1ad83b1a84b4f90af2c8244caad1a authored over 7 years ago

htslib 1.6

Closes #6360.

Signed-off-by: ilovezfs <[email protected]>

301a5877b1ca2bdede0cab89667dd2123ca1ad53 authored over 7 years ago

libsequence: Fix style (#6359)

Fix the style error:
Use parentheses for ternary expressions with complex conditions.

b91b77e7769953b0f5881fea1f57e35bdcec9b64 authored over 7 years ago

PULL_REQUEST_TEMPLATE: do not allow new formulae in homebrew-science (#6348)

00b5b2d9850196630a748e2561ec19aac76e8752 authored over 7 years ago

rstudio-server: update 1.0.153_1 bottle for Linuxbrew.

ac68fba5000921fdfb1948b919c6be96a95a43c9 authored over 7 years ago

rstudio-server: update 1.0.153_1 bottle.

8018cdc2b219e4e20ca76b92d2dcd0f23f0c6375 authored over 7 years ago

rstudio-server: fix linuxbrew linkage error

Closes #6315.

Signed-off-by: Shaun Jackman <[email protected]>

093841fe33e88e8d9657721bb6bcf27e2f6628b1 authored over 7 years ago

fwdpp: update 0.5.7_1 bottle for Linuxbrew.

e5c6476d6e9dfc444813cb042147e1805663837b authored over 7 years ago

libsequence: update 1.9.1_2 bottle.

24a4b1f745577af7237e01934e3a72e82f9e8f47 authored over 7 years ago

libsequence: update 1.9.1_2 bottle for Linuxbrew.

cd4545bcf0ec7ea5bf4099b72693f71f4fa5c1b3 authored over 7 years ago

fwdpp: update 0.5.7_1 bottle.

badabbcd33611de4259c938fd56fc427f19081dd authored over 7 years ago

fwdpp: revision for libsequence

Closes #6349.

Signed-off-by: Shaun Jackman <[email protected]>

d192ec09844ffb468e00a08be5bb0cfb15b47169 authored over 7 years ago

libsequence: revision for gcc-5

5ce4853ed6a54e1e953158bfb2282e5a096c2ec8 authored over 7 years ago

libbigwig: update 0.4.1 bottle for Linuxbrew.

e67c9cf325af5f98ba2305fa36177fc12e5c3acc authored over 7 years ago

libbigwig: update 0.4.1 bottle.

6bbfd00bd684ccce00747000297b07d0c63373e6 authored over 7 years ago

libbigwig 0.4.1

Closes #6344.

Signed-off-by: ilovezfs <[email protected]>

1a41f07df9492c7adb9958a9b125bbd3f644f8a4 authored over 7 years ago