github.com/sagemath/homebrew-science commits | Ecosyste.ms: OpenCollective

idba: secure url(s)

3300b072c34793cd4b89fafc38f61a45b07ccca8 authored about 7 years ago

snap-aligner: secure url(s)

98be608cfb081ccd39d145fc08b1157e48e3bb86 authored about 7 years ago

ucsc-genome-browser: secure url(s)

e2a5520f56bf15a72f74250d6b0328852f9067a2 authored about 7 years ago

biomake: update 0.1.3 bottle for Linuxbrew.

473810b3d2bbc57e1a049779f1a8f86471f29a92 authored about 7 years ago

biomake: update 0.1.3 bottle.

2b1093aee2503c28044c36f691a3713aa4374af0 authored about 7 years ago

biomake 0.1.3

Closes #6470.

Signed-off-by: Shaun Jackman <[email protected]>

0b484e8966db66a42849922e4329cb515014cfb4 authored about 7 years ago

nextflow 0.26.2

Closes #6468.

Signed-off-by: Shaun Jackman <[email protected]>

4723cadc8b0c5560271ec5007a18fd65494ad0a1 authored about 7 years ago

bedtools: migrate to homebrew/core (#6343)

304d1901a3be9f1d98e0ece7e7ca57748e7e9973 authored about 7 years ago

cdo: add 1.9.2 bottle for Linuxbrew.

aa2faf557b100b088eaa4956668acf01582e7b4e authored about 7 years ago

cdo: add 1.9.2 bottle.

31b8f53d90f16e03d9f58ca1ec394e01ffb4fbea authored about 7 years ago

cdo 1.9.2

Closes #6465.

Signed-off-by: ilovezfs <[email protected]>

52891828cd3990e8cdbb31ce30e698289addc30c authored about 7 years ago

igv: Fix audit error

Fix: Dir(["igv.sh"]) is unnecessary; just use "igv.sh"

af262f25f5fdf7768cf93baf9208ca458b74e655 authored about 7 years ago

igv 2.4.4

2ed660a82f77879f56c256ff1ff4daa28d542e1f authored about 7 years ago

igv 2.4.3

d600fc94e4765342999f336e8a54279ae3581478 authored about 7 years ago

nccmp: add 1.8.2.1 bottle for Linuxbrew.

6c4097a121de478b3ba47b585b0e1db3e2179a7e authored about 7 years ago

nccmp: add 1.8.2.1 bottle.

fa8c92e589284318128686ac35e52955f29c5fff authored about 7 years ago

nccmp 1.8.2.1

re-enable bottle

Closes #6458.

Signed-off-by: ilovezfs <[email protected]>

b9fd4d202e6f35cd4897962a05ad90d03d7c91f1 authored about 7 years ago

graph-tool: add 2.26 bottle.

d589dd012a072c8ac320217501ccd36fe350c462 authored about 7 years ago

graph-tool 2.26

re-enable bottle

Closes #6347.

Signed-off-by: ilovezfs <[email protected]>

ab7390c485d7b33bc357b591cd491ba3fdf5c4ab authored about 7 years ago

scram: update 0.16.0 bottle.

0275a90d02381d365fe4c9fe98fd06366bbedba4 authored about 7 years ago

scram 0.16.0

Closes #6459.

Signed-off-by: Michka Popoff <[email protected]>

c482a88dc070d111222e607c03dd397c84486af5 authored about 7 years ago

diamond: update 0.9.13 bottle for Linuxbrew.

30d4ba7cc34de564a24e8ffff508f7ebb495213c authored about 7 years ago

diamond: update 0.9.13 bottle.

756ff33c2ef88166f6acbd2d24156fb0cba86b21 authored about 7 years ago

diamond 0.9.13

Closes #6456.

Signed-off-by: ilovezfs <[email protected]>

767102fa48082811be792005723336fe09b9e566 authored about 7 years ago

formula_renames: remove ampl-mp rename from asl (#6453)

ampl-mp was migrated to homebrew/core so this entry triggers warnings

d1512f74918c3fe07ddbda5b98836ef2423c8486 authored about 7 years ago

nextflow 0.26.0

Closes #6434.

Signed-off-by: Michka Popoff <[email protected]>

a5814f4e0e699364d523f475a2d7cb11814bbbd1 authored about 7 years ago

cdo 1.9.1 (#6442)

b87f553afcc1980c85f0cac8815a67cb0f990f30 authored about 7 years ago

cdo: unbottle

b19b3116c62819f06bd9a28eb3656eb357770e67 authored about 7 years ago

therion: unbottle

ff27a0f899a77f6dd774008b1701247a9b260fa0 authored about 7 years ago

xmgredit: unbottle

0b7f3097647c5056a9c261a18c93cb467d683d2a authored about 7 years ago

libminc: unbottle

82becb466f915c5d3d9c91a0b20f69c2a5eb9c5f authored about 7 years ago

nccmp: unbottle

d5faa46d6a5e952f307e5f45702312dcb8f0800c authored about 7 years ago

moab: unbottle

811ecb14845f528fbae763b863ef8a6649984bb8 authored about 7 years ago

libbi: unbottle

85c4dca12f6369dc163dcb5c7d12f967e7ee7e46 authored about 7 years ago

insighttoolkit: unbottle

e61eb65b1b951650b1f93d8a6079647fd12008cb authored about 7 years ago

gnudatalanguage: unbottle

34c682195f9a57fac3aecb9794799a64c5b2da5f authored about 7 years ago

radx: unbottle

b5deab00b018b9e682fcfbed4ccf1af75d5ab1db authored about 7 years ago

etsf_io: unbottle

ce4c16ea0c04d3da7319bce1e66c3f8bbc5dd855 authored about 7 years ago

cmor: unbottle

703eb0a23c26d6e68b5608ab748257ce14031df6 authored about 7 years ago

abinit: unbottle

5937537af09439844df69f8669c11808f61e25d5 authored about 7 years ago

parallel-netcdf: unbottle

91ac989dad5e624ccc9c1a2bce2992ea64043651 authored about 7 years ago

alpscore: unbottle

f9b02e1fe148a9d836e8e5a214a2620ff9c54cf9 authored about 7 years ago

mumps: unbottle

5ddc36f67da4a702efdcbfab970165b3c121e675 authored about 7 years ago

meme: unbottle

829bcd7a89201bd5ed4c63328587b9f3e77cf485 authored about 7 years ago

slepc: unbottle

3fa6ae5f3a029bf3d9a2eba6e0f85ae0a1f0a83f authored about 7 years ago

p4est: unbottle

8e58031e476c59e788e9a2a0c2317c6b9e525bd1 authored about 7 years ago

ipopt: unbottle

f238dec2f6a4210c0594b1900d7645dd3036f3ce authored about 7 years ago

getdp: unbottle

d56cc038edbbeff5695e729acd4227fe794cbc4b authored about 7 years ago

garli: unbottle

77a1700272187998e0ced71605880daf23011eb8 authored about 7 years ago

zoltan: unbottle

900f217fb708624a7c6466f0b20db0e54f70249f authored about 7 years ago

trilinos: unbottle

4dc031e6ea96282db5b8ba547dc676e1a686ab89 authored about 7 years ago

superlu_dist: unbottle

0bd8625f7b8bf778953c4f5c65e5e0eec2550327 authored about 7 years ago

scotch5: unbottle

165b4708731d4d77fdf162e73030b825ad7e4155 authored about 7 years ago

ray: unbottle

917abb26513df1b08951aaec1a39db37d6b55e9d authored about 7 years ago

petsc: unbottle

c35532a5421d60aa9894095b52133ecd33199b94 authored about 7 years ago

scotch: unbottle

b66ab724a13cfb43d34ec9c18898c4dfa0e5ce34 authored about 7 years ago

pastix: unbottle

1f0af94c671c837093f01184ed66387b0384375f authored about 7 years ago

exabayes: unbottle

7f4bbd12b9a29518c8cadb38eb6f8d4e04f296d9 authored about 7 years ago

elemental: unbottle

ff9e8c6a9dbadae4c579a3fb27267e0b1d483472 authored about 7 years ago

dl_poly_classic: unbottle

95435464dafbf1533934c280c752e824064626b4 authored about 7 years ago

dida: unbottle

e68134fe2d6921b2e20712854eaa33baf2639ca0 authored about 7 years ago

lammps: unbottle

cd5295c4cebc6836a79b61d58455374e2407320d authored about 7 years ago

cp2k: unbottle

18c88d2ae41ca4275fc2a71e6ea353c0644e937c authored about 7 years ago

bless: unbottle

ed052be2b309347237c109a9cf9af9c3dacddac5 authored about 7 years ago

parmetis: unbottle

ea494b2c875fd2fc59fe1bbdc1c39e4b178a1857 authored about 7 years ago

lis: unbottle

7bc3815e6c80612c77a9d2434397b719c686e126 authored about 7 years ago

dssp: unbottle

2e8237d8d309e0d8fe356c19ecdf287b0d6e8fb9 authored about 7 years ago

pykep: unbottle

a468a8edb40bb45bb3aea7830ee22b5e39579981 authored about 7 years ago

dealii: unbottle

6893f432b4712fe06f23d8500e172754bc29c6a5 authored about 7 years ago

rapsearch2: unbottle

9d8bc541ed9026dc47cf8138010b77913b7bc31b authored about 7 years ago

quaff: unbottle

29a7a33a39d4a595b617aa3fb45522aa9f5c42e2 authored about 7 years ago

pulseview: unbottle

90ddfa5e39e22c052fbbcb583690570c7086f31c authored about 7 years ago

openimageio: unbottle

d205a2681f5131a3fe4c90e93be1eb6afaeff936 authored about 7 years ago

ome-xml: unbottle

da802e2b8e3eb349f87f67229de096451c2c0eec authored about 7 years ago

ome-files: unbottle

4936f1de198683f05d457c78efebc624c1903b37 authored about 7 years ago

ome-common: unbottle

18041eacd5971b16cbc8097a601e24d6d1cb25a7 authored about 7 years ago

nixio: unbottle

4ebe9bca34c6382c42ae6ad3379cb63d7e5ae120 authored about 7 years ago

field3d: unbottle

12b341a191a0117484b8365d10e7123a961a6485 authored about 7 years ago

graph-tool: unbottle

ffc28f62ee9bf1b68b0e0ea3c292515fd19321e2 authored about 7 years ago

mlpack: unbottle

5a3d262b3268118bd73af5d8e6f9ac21fe19ce1c authored about 7 years ago

rstudio-server: update 1.1.383 bottle for Linuxbrew.

38f94a736b63dd8297f4ed8b70d18e587a4cf57c authored about 7 years ago

rstudio-server: update 1.1.383 bottle.

85f0fbc527462dc8b245d8dc32b4b8090ca477e0 authored about 7 years ago

rstudio-server 1.1.383

Closes #6431.

Signed-off-by: Shaun Jackman <[email protected]>

f2f0778815a8e73e6fb44a4de5a331d17b8766e1 authored about 7 years ago

unicycler: update 0.4.3 bottle for Linuxbrew.

7d6e347e720fe0adc29b1e316c93927918ec7e20 authored over 7 years ago

unicycler: update 0.4.3 bottle.

2834a47c86b8f3bd3f50b9bac8770515eb39fbf1 authored over 7 years ago

unicycler 0.4.3

Closes #6430.

Signed-off-by: Shaun Jackman <[email protected]>

f2c0802bb4b6f1a2e56877a842d4ee745821e6d6 authored over 7 years ago

unicycler: update 0.4.2 bottle for Linuxbrew.

d5a9ab1aa150cb71f84846d0659ee7091396ddd0 authored over 7 years ago

unicycler: update 0.4.2 bottle.

f7b5e119b7a722dce94b94c8d6a79ba3c6cdc64a authored over 7 years ago

unicycler 0.4.2

Closes #6429.

Signed-off-by: Shaun Jackman <[email protected]>

ec85b7f546c43ce909ed04b85a94ab6fb2bfb488 authored over 7 years ago

ipopt: update 3.12.8 bottle.

60f6064467f36b80dbcc91164d21acd4ca227ae4 authored over 7 years ago

ipopt: fix test

Closes #6418.

Signed-off-by: Dominique Orban <[email protected]>

7e53d5402f3293fc469366f36393bdc64e767ea2 authored over 7 years ago

Delete bali-phy.rb

I've made a third-party tap for this at bredelings/homebrew-bioinformatics/bali-phy.rb
Any comme...

73edd6fdf0a0d4d362bb32a21ce0c757bcb6c98e authored over 7 years ago

htslib: migrate to homebrew/core (#6366)

fdaaf7a0d0a43b267761c70f073eeef56a0b9499 authored over 7 years ago

mbsystem: remove from homebrew-science

This is an attempt to remove mbsystem from homebrew-science as mbsystem is now maintained in a s...

def19f86c4ce60921ddf26e49c5f03476d9ac2cf authored over 7 years ago

mira: Add desc and rename google-perftools

7745eada040ca2a98be1c274f9b1585d79c2d473 authored over 7 years ago

atompaw: Depends on veclibfort for macOS

84aeafe862615a8912632b8a8b7796e9020e55b0 authored over 7 years ago

Add .github/stale.yml (#6426)

Enable Probot: Stale.
See https://probot.github.io/apps/stale/

111a1197dacb50b160c9aa4e880da8e3f5468a91 authored over 7 years ago

pymol: remove formula

pymol has been broken since months.
Patching seems complicated as huge patches
need to be applie...

4d5f8157ebdad168c13aa40d496e008cd74c56ce authored over 7 years ago

nixio: update 1.4.1 bottle.

b2fe3bf8a1a88f661bd28ba5274ab04931998fb5 authored over 7 years ago

nixio: update 1.4.1 bottle for Linuxbrew.

dd65732ae17e749379f057b2e392bc65171dff43 authored over 7 years ago