github.com/sagemath/homebrew-science commits | Ecosyste.ms: OpenCollective

gap 4.8.9

Closes #6500.

Signed-off-by: Shaun Jackman <[email protected]>

228e7c70173f17c2f2c29532d4b9c0005719228b authored about 7 years ago

lightstringgraph: revision for boost

3ce70dc1ced182d60bafd8ce9b8c4368ced9d130 authored about 7 years ago

field3d: revision for boost

0b642da477040bf45be2ceb6f4cb00731acdcf2c authored about 7 years ago

cmdstan: revision for boost

97dcce695ef4581eb0a267567ffcc8ce94932f01 authored about 7 years ago

shark: revision for boost

3fdd6a9f11ca150fa07f5e1eb0eb69c9a49ca28a authored about 7 years ago

rstudio-server: revision for boost

2ae629b7a6e67dcf19b3ee7655ccd8913cdac320 authored about 7 years ago

mlpack: revision for boost

794305f35d02f408c0cd9a5547acbd650da663ca authored about 7 years ago

alpscore: revision for boost

96c658051ebedc05b88f01c8b0da97d145c0cc41 authored about 7 years ago

quake: revision for boost

eabe29bf6c7427942dd60e36102398270bd04461 authored about 7 years ago

sailfish: revision for boost

596714f34a8943c8630ad47251339dad39edd828 authored about 7 years ago

rapsearch2: revision for boost

4cf0e95b64772115d995231636957d43297541ad authored about 7 years ago

scram: revision for boost

424a5d093b580dc7728f4d2b8b1a2e3ee9f55dd2 authored about 7 years ago

salmon: revision for boost

56a7197835a439e6f3f1e0cfad233292b556d69c authored about 7 years ago

ome-xml: revision for boost

90dfa627f90e3f242424d9f148dec3001852fd5b authored about 7 years ago

ome-common: revision for boost

32de44762c4ae14e485ead0c638b454e027644e8 authored about 7 years ago

tophat: revision for boost

58629ba1f6b91050e5f1fe64588b93d5ed5fd14f authored about 7 years ago

quaff: revision for boost

73f24b4b7f20ead33837174f5e8547dd9962bb5e authored about 7 years ago

pykep: revision for boost

cde24b9575de2cba3f9d39a6bc4a1b9e979980d6 authored about 7 years ago

pulseview: revision for boost

17d409675e20f4b9f5ba56c53a1fd34317299e8b authored about 7 years ago

paraview: revision for boost

bb2b5cbeae3545f3185fb997135f00af4850600a authored about 7 years ago

openimageio: revision for boost

51f45f611382c68f6c8e11b10094d52a8a988ba4 authored about 7 years ago

nixio: revision for boost

b73583d766b8656144df75791e3d14917dd4ec85 authored about 7 years ago

mtl: revision for boost

31b8feb29182778097760f8abd95aeff75d8c864 authored about 7 years ago

mothur: revision for boost

828b8942506a3db2d8ff029312f863834ff7ea97 authored about 7 years ago

meraculous: revision for boost

98091a274ff64f628691d75308d906ba8d52efb3 authored about 7 years ago

lobstr: revision for boost

3e139695bc283a1937354d936c9497edfec139cb authored about 7 years ago

libsequence: revision for boost

5865bfb97d672b7a5fd6b83505a421156e00860c authored about 7 years ago

libbi: revision for boost

96de53e61dd62011942b31b5fa59fb416b2d616b authored about 7 years ago

kat: revision for boost

c95746e83c67acd2b69143e72eaaa44064bb7c9c authored about 7 years ago

joinx: revision for boost

1a4dfa72190e92aaa4df7df0efca8192bcb0be40 authored about 7 years ago

graph-tool: revision for boost

862cab63c77f20ee42b62e013cf0a3665b195328 authored about 7 years ago

galsim: revision for boost

ec1d1469baf83bdc27096cb59171aef1b5ce5695 authored about 7 years ago

fwdpp: revision for boost

d29576f436eda42ae2c1de170fba05ea3eb4a6ee authored about 7 years ago

express: revision for boost

bb31cb801492a3a52ff6d7a94fc97ad54413dc78 authored about 7 years ago

enblend-enfuse: revision for boost

44fbc3950c7a18def80b38d475b60baa8df570c7 authored about 7 years ago

dssp: revision for boost

624ea9e8f3c95e456d44bf4f29bd7db60907e1ee authored about 7 years ago

delly: revision for boost

46a5c99c172f8751206c9e9a2ebfcdafac298b03 authored about 7 years ago

mira: revision for boost

bc53232efc65d69d354f46670d3432a0e3410c80 authored about 7 years ago

dealii: revision for boost

effea8690234d0812dbedd8ea9fb09eb0f4e43ca authored about 7 years ago

cufflinks: revision for boost

2235b5c22b5ea253cbd24ad68269f7da06e39762 authored about 7 years ago

ckon: revision for boost

9599f1ab495668214438a44635d0de9dcdd91e18 authored about 7 years ago

nxtrim: revision for boost

8c92e7df6a46675c18dd8ed3998cc97fa12a649c authored about 7 years ago

boost-compute: revision for boost

2e3ea439f31c60102e6e877a42a227d3e386282c authored about 7 years ago

bless: revision for boost

0d3b4aa6eb62cb1162657e7ba72a8e86e3dcd81f authored about 7 years ago

blaze-lib: revision for boost

2d926c95f54fb810189c8d18409445ff7427c49d authored about 7 years ago

augustus: revision for boost

e5bb2033c167e67d678f71077abe7a1dd1c8fc51 authored about 7 years ago

analysis: revision for boost

4dc3d1c8f5b3a86bfb7ae55106575c9e5cdbc207 authored about 7 years ago

amos: revision for boost

103573b085ec2d4480ef1a167c9e423a4e213907 authored about 7 years ago

vislcg3: revision for boost

2e2cc233e0a30dc74a3850ebb81e728ce719fc7b authored about 7 years ago

dgtal: revision for boost

f665dcc5b900208802ff28967d0381e1e597c7ee authored about 7 years ago

trilinos: revision for boost

a9e132e5ffa24ff7889b2db0fe5d970f07bbff16 authored about 7 years ago

fastqc: migrate to homebrew/core

c0986e0bd0b49161b3c25c917cbda26691348e01 authored about 7 years ago

picard-tools: migrate to homebrew/core

See https://github.com/Homebrew/homebrew-core/pull/21679

d0d31c24bf3043fcf5c197abce978553205c9f8e authored about 7 years ago

genometools: migrate to homebrew/core

02e34b8a7bd6358f0b6163b31c3974c6366fbdfa authored about 7 years ago

prodigal: migrate to homebrew/core

37ecd342c875985fc48865cb26783ae8ee7ee394 authored about 7 years ago

omcompiler: update 1.12.0 bottle.

afe20492424814a67bf724a7250048455a9e4bda authored about 7 years ago

omcompiler 1.12.0

Closes #6421.

Signed-off-by: Shaun Jackman <[email protected]>

b0c83dc387ef4db3bb1f880117af3eb28fdbdfd8 authored about 7 years ago

moose: Remove formula

Maintaining this project in our personal tap.

2ee9368e31e7e85acfe2970cdd67cff6cd468c60 authored about 7 years ago

quicktree: update 2.2 bottle for Linuxbrew.

3c39f89441a2f3b82d455de056016ff884563673 authored about 7 years ago

quicktree: update 2.2 bottle.

fe82362c05d4596b13d1974f84b011ccb6395977 authored about 7 years ago

quicktree 2.2

Closes #6432.

Signed-off-by: Shaun Jackman <[email protected]>

a4a16f256f88f4da39817cf6c5d61e3a5d0db50e authored about 7 years ago

igv: migrate to homebrew/core (#6367)

dddc3d815b4985e3ac87d826828ced66939e2055 authored about 7 years ago

swarm: update 2.2.2 bottle for Linuxbrew.

802ed5a08b0774c18e6d26d6d970150330529064 authored about 7 years ago

swarm: update 2.2.2 bottle.

190fcb9d67701c09c6011f13c90a6357484205ce authored about 7 years ago

swarm 2.2.2

Closes #6491.

Signed-off-by: ilovezfs <[email protected]>

3784711f565c0e004f8e4670e0d420b421fa8a87 authored about 7 years ago

seq-gen: Add tag bioinformatics

18b41fd8e508c09bde2f4d768be970ae461e8dcd authored about 7 years ago

seq-gen: add 1.3.4 bottle.

6211c06eba47e7fa0ecae895baefc2ddce098d02 authored about 7 years ago

seq-gen: add 1.3.4 bottle for Linuxbrew.

7d554441555f8a09af17974687e8b7b93278ace5 authored about 7 years ago

seq-gen 1.3.4

Closes #6490.

Signed-off-by: Shaun Jackman <[email protected]>

393e59df7a3575d66dfc9327eb34e8167ff3f49f authored about 7 years ago

nest: Ignore fail of inreplace of gcc path in nest-config (#6488)

Ignore fail of inreplace of gcc path in nest-config, assuming that the path doesn't need to be r...

a2ab67e2d5dfe1e62ee93d4173445d2f409edf47 authored about 7 years ago

nest: update 2.14.0_1 bottle for Linuxbrew.

653fd3975e0ac8225ba01e246039062e72fd4e61 authored about 7 years ago

nest: update 2.14.0_1 bottle.

daa1aaede00676d9b75f76db967bf63da2fcd8ad authored about 7 years ago

nest: PyNEST bindings by default

Closes #6482.

Signed-off-by: Shaun Jackman <[email protected]>

20046963a4b45bd7d1a359ec82b3acce2f70b1f3 authored about 7 years ago

nest: update 2.14.0 bottle for Linuxbrew.

285c6e48e13c86c925c5342cf13543bf7295a2dd authored about 7 years ago

nest: update 2.14.0 bottle.

d1b827f8bbffb2e3c6c22f8255186eb1405cd797 authored about 7 years ago

Run inreplace on nest-config to replace internally accessible Homebrew g++ path with externally accessible path.

Updated Cython version

Deleted PYTHONPATH environment variable at start of install block
to avo...

ed0eb91b5fa857dc27a64c57e33901af17917a33 authored about 7 years ago

transdecoder: update 5.0.2 bottle.

a3fc28eb0df23b763dfa41b5de3ee6e60bde88a1 authored about 7 years ago

transdecoder 5.0.2

Closes #6446.

Signed-off-by: Shaun Jackman <[email protected]>

e37030cc481c0c8f3b0442e8e3d04a3cacb6e465 authored about 7 years ago

neuron: update 7.5 bottle.

c4b8ceffad527c48a6cc1e917936ac4f198bad20 authored about 7 years ago

neuron: update 7.5 bottle for Linuxbrew.

07a05f58679997d5b133fbd2d527606b94aa67f4 authored about 7 years ago

neuron: Dependency inter-views is optional

Closes #6480.

Signed-off-by: Shaun Jackman <[email protected]>

df26e6d74abeb81b02623302f8634b1215370ae3 authored about 7 years ago

ome-xml: add 5.6.0 bottle for Linuxbrew.

d4ca13ee4adba667216f8069bbdf024d91079fab authored about 7 years ago

ome-common: add 5.5.0 bottle for Linuxbrew.

e2e0cd17a6f30e4250d0b5b83811f91f6dd21fc1 authored about 7 years ago

ome-files: add 0.5.0 bottle for Linuxbrew.

9fd1845323b00d4c66548da65c9000bd4e99a1b1 authored about 7 years ago

ome-files: add 0.5.0 bottle.

ef3f8e628d3735286bcf086321fca2fe8101f3c0 authored about 7 years ago

ome-common: add 5.5.0 bottle.

4aa9bf6f51c79222f531e6ff84b8bc777b771562 authored about 7 years ago

ome-xml: add 5.6.0 bottle.

2fec526c2da859a8c30eff73b4ff42ce975af5f7 authored about 7 years ago

ome-files 0.5.0

Closes #6481.

Signed-off-by: Shaun Jackman <[email protected]>

61f2ad0e8f3669e2b344f4029ec342248aea10ac authored about 7 years ago

ome-xml 5.6.0

87776db53e4f7acc81b23fcf27ea04e655db073d authored about 7 years ago

ome-common 5.5.0

7d6dcd888e461ca705d86208416b4171c4823bdf authored about 7 years ago

updating picard-tools to 2.15.0

Closes #6475.

Signed-off-by: Shaun Jackman <[email protected]>

807280ca2d90d23eb0066840e024e7a43955abc1 authored about 7 years ago

neuron: update 7.5 bottle.

aa059da6829875d94df127c7db479249998def22 authored about 7 years ago

neuron: update 7.5 bottle for Linuxbrew.

8d538b9c8afa0f394ed5b78a589af648f18f483d authored about 7 years ago

neuron 7.5: Download from the GitHub snapshot

Download from the GitHub snapshot instead of the Neuron download page.

Closes #6474.

Signed-of...

26af0164125be091f444f3365790f54146953300 authored about 7 years ago

trimadap: Add head

ce984fdecccee575f9210662b820f963168c61b6 authored about 7 years ago

neuron: update 7.5 bottle for Linuxbrew.

6b507dfe2386632fa8fe6bfbce49a7c4061f6f68 authored about 7 years ago

neuron: update 7.5 bottle.

39b4c887920796074b0139ddfbb06b10a2f3c56e authored about 7 years ago

neuron 7.5

Added support for Python 3 bindings with --with-python3 flag.

neuron.test() disabled test which...

5e850ca7d9222d9d4101ab4f80b4e61b59e93884 authored about 7 years ago

snap-aligner: secure url(s)

98be608cfb081ccd39d145fc08b1157e48e3bb86 authored about 7 years ago

ucsc-genome-browser: secure url(s)

e2a5520f56bf15a72f74250d6b0328852f9067a2 authored about 7 years ago