github.com/sagemath/homebrew-science commits | Ecosyste.ms: OpenCollective

last: migrate (#125)

7e7717020140e146aae6ed71230508dae78f6da9 authored almost 7 years ago by Torsten Seemann <[email protected]>

lastz: migrate (#126)

3e4f9b4ab0d2f2bf8d951e3592b5006a4d52a0cc authored almost 7 years ago by Torsten Seemann <[email protected]>

exabayes: migrate to brewsci/bio

https://github.com/brewsci/homebrew-bio/pull/188

2a37bc74560c6eb9bdeb5119fa271ee842ca9d18 authored almost 7 years ago by Jonathan Chang <[email protected]>

nonpareil: migrate to brewsci/bio (#122)

6644d9bd86bde74badc529eca58df9c0ebe68f15 authored almost 7 years ago by Shaun Jackman <[email protected]>

iqtree: migrate (#121)

c53fd4ea723596abeff705470995d266c4c6f8cf authored almost 7 years ago by Torsten Seemann <[email protected]>

bowtie: migrate to brewsci/bio (#120)

d6e78ffa2d0de98b94f5f1ed2841cee9619f1676 authored almost 7 years ago by Shaun Jackman <[email protected]>

cap3: migrate (#119)

53523de807e4f20f8a014686f10b52763c6ad7a3 authored almost 7 years ago by Torsten Seemann <[email protected]>

prokka: migrate (#114)

978b3f774936870a4af13ab585f96dd7fc43f6a2 authored almost 7 years ago by Torsten Seemann <[email protected]>

uniqtag: migrate (#118)

35b07813032fa864458101e48363c8d24937e617 authored almost 7 years ago by Torsten Seemann <[email protected]>

nextflow: migrate (#117)

aa17faac0a851e1b3900959968826fbebadbb357 authored almost 7 years ago by Torsten Seemann <[email protected]>

paml: migrate (#116)

01b1419afe12a994a26f4a368fa7e71a11c43210 authored almost 7 years ago by Jonathan Chang <[email protected]>

samblaster: migrate (#115)

b7865cd7804270f2912450a226e5334b75f7506c authored almost 7 years ago by Torsten Seemann <[email protected]>

vt: migrate (#110)

1fea6da2c7b4403006ff152d8b1a0824b3b6980f authored almost 7 years ago by Torsten Seemann <[email protected]>

kraken: migrate (#113)

709d6d09af2c5c78faf9a404f069fd2df6fd2569 authored almost 7 years ago by Torsten Seemann <[email protected]>

varscan: migrate (#111)

1852618ef300c84cfc37ced28da1bcf500c5de32 authored almost 7 years ago by Torsten Seemann <[email protected]>

readseq: migrate (#109)

3214139d7907081d51a7b0f18f2f5ab15b87a94d authored almost 7 years ago by Torsten Seemann <[email protected]>

raxml: migrate (#106)

414d2ed951753840609e650ff2665b36f4d094d7 authored almost 7 years ago by Jonathan Chang <[email protected]>

abacas: migrate (#108)

b075570953aa517ce4ec11d65a1e132fdf31b2a6 authored almost 7 years ago by Torsten Seemann <[email protected]>

vopt: migrate (#105)

5dbaf8a4ca61a0ec79810cb52a33e23a3ba52108 authored almost 7 years ago by Torsten Seemann <[email protected]>

oases: migrate (#104)

919feba2349d84d8178cf4bd8e935b0c765a7f30 authored almost 7 years ago by Torsten Seemann <[email protected]>

velvet: migrate (#103)

214e8f4044831f7021418fbe7bbbfdf742df27a2 authored almost 7 years ago by Torsten Seemann <[email protected]>

emboss: migrate (#102)

8e36f7933e94d1e1c36922f9d2611ac35dba99bc authored almost 7 years ago by Torsten Seemann <[email protected]>

maker: migrate to brewsci/bio (#97)

4222d08e8b5ee7181c7e88ff2ee8c960b8bc0d20 authored almost 7 years ago by Shaun Jackman <[email protected]>

clustal-w: migrate (#101)

b9b550f36e6a3fa34269d046513f8c5a766f523f authored almost 7 years ago by Torsten Seemann <[email protected]>

clustal-omega: migrate (#100)

c104b9e9c482dbb7a74fc8f6d66e1aa75bd9c5e3 authored almost 7 years ago by Torsten Seemann <[email protected]>

quicktree: migrate (#98)

f88a383c7de3249f318bdbbe9e7301c442fc462b authored almost 7 years ago by Torsten Seemann <[email protected]>

quast: migrate to brewsci/bio (#96)

69f02e05e820e8e77d7daf77aa5fdea125c59563 authored almost 7 years ago by Shaun Jackman <[email protected]>

Hmmer2.migrate (#75)

* hmmer2: migrate to brewsci/bio

1eeb9699173659409d1f4f1dc0bd470f241453fd authored almost 7 years ago by Torsten Seemann <[email protected]>

Migrate.newick utils (#94)

* newick-utils: migrate to brewsci/bio

551a41f174a6213170e238c50b473d2a748ca1a4 authored almost 7 years ago by Torsten Seemann <[email protected]>

Mhap.migrate (#93)

* mhap: migrate to brewsci/bio

95209ee04ad3506b3db2f598fc2fc5f12cd89deb authored almost 7 years ago by Torsten Seemann <[email protected]>

Migrate.minia (#95)

* minia: migrate to brewsci

c96068f6ce7f0bf2b4784d125eb73ad0ca0d0ca7 authored almost 7 years ago by Torsten Seemann <[email protected]>

lmod: migrate to core

b16aa6b4e22c2292e434cfe81428c92219e21a89 authored almost 7 years ago by Henry Fredrick Schreiner <[email protected]>

Mlst.migrate (#92)

* mlst: migrate

ddabae2371cb9a899b038fc34d3dae1900c01de2 authored almost 7 years ago by Torsten Seemann <[email protected]>

Migrate.art (#90)

* art: migrate to brewsci/bio

1bbced51ab27e01125787f3ca558ed6f67d87447 authored almost 7 years ago by Torsten Seemann <[email protected]>

Migrate.mcl (#89)

* mcl: migrate to brewsci/bio

2e1da4a36a38a8869f5f5117a2eb05a7fb148e1b authored almost 7 years ago by Torsten Seemann <[email protected]>

Migrate.muscle (#88)

* muscle: migrate to brewsci/bio

6b04d1623de3bceb054957149cad78caca3a1d03 authored almost 7 years ago by Torsten Seemann <[email protected]>

Migrate.minimap (#87)

* minimap: migrate to brewsci/bio

6c63d8a25c39a2e9ff7ac3f0bd6c0ea3aed2da39 authored almost 7 years ago by Torsten Seemann <[email protected]>

genewise: migrate to brewsci/bio (#86)

See https://github.com/brewsci/homebrew-bio/pull/119

3720face2275842ab1a72f83c0b2edfb10edd0f9 authored almost 7 years ago by Shaun Jackman <[email protected]>

mir-prefer: migrate to brewsci/bio (#85)

See https://github.com/brewsci/homebrew-bio/pull/118

0c4e3a0375c8674d8253d3350437e115ea44efcb authored almost 7 years ago by Shaun Jackman <[email protected]>

viennarna: migrate to brewsci/bio (#82)

See https://github.com/brewsci/homebrew-bio/pull/111

663c089c8a15cc67580537c1d845b2b2dd8fb382 authored almost 7 years ago by Shaun Jackman <[email protected]>

matplotlib: migrate to brewsci/bio (#83)

See https://github.com/brewsci/homebrew-bio/pull/115

3eab97d9583c7c0c58219d26935886b044510c6e authored almost 7 years ago by Shaun Jackman <[email protected]>

e-mem: migrate to brewsci/bio (#84)

0ac3bfeb4afd9752fb132d47f319d2854bb12880 authored almost 7 years ago by Shaun Jackman <[email protected]>

trnascan: migrate to brewsci/bio (#80)

See https://github.com/brewsci/homebrew-bio/pull/109

cd1581f0f9819688b0b48af14a27e64a64a41699 authored almost 7 years ago by Shaun Jackman <[email protected]>

snoscan: migrate to brewsci/bio (#81)

See https://github.com/brewsci/homebrew-bio/pull/110

27363b85bf0b5e293bfeb3073eb749b22b921dd7 authored almost 7 years ago by Shaun Jackman <[email protected]>

exonerate: migrate to brewsci/bio (#79)

See https://github.com/brewsci/homebrew-bio/pull/108

e3dcdbe22dbb3eebf775e658befc93861ea31e4a authored almost 7 years ago by Shaun Jackman <[email protected]>

meme: migrate to brewsci/bio (#43)

See https://github.com/brewsci/homebrew-bio/pull/46

dd4de64df59157cfff706dcdcf20a09e9bb44690 authored almost 7 years ago by Shaun Jackman <[email protected]>

transdecoder: migrate to brewsci/bio (#46)

See https://github.com/brewsci/homebrew-bio/pull/52

4c3097858fd3a3d6a8fdc97f53d205f82b4c0799 authored almost 7 years ago by Shaun Jackman <[email protected]>

Artemis.migrate (#78)

* artemis: migrate to bio

6fb1d6966d88bb818a45ca0f3c1ea7793005771d authored almost 7 years ago by Torsten Seemann <[email protected]>

circos: migrate to brewsci/bio (#77)

See https://github.com/brewsci/homebrew-bio/pull/103

0717972c2d394cecf25cbaedc7b432ec8bd484b3 authored almost 7 years ago by Shaun Jackman <[email protected]>

unicycler: migrate to brewsci/bio (#76)

See https://github.com/brewsci/homebrew-bio/pull/101

4e69e28a88826c20334e546ae7f2ea7b825a2a3a authored almost 7 years ago by Shaun Jackman <[email protected]>

snap: migrate to brewsci/bio (#72)

See https://github.com/brewsci/homebrew-bio/pull/98

85bdf6a7df7551096737ef84e5e9879ffaee5971 authored almost 7 years ago by Shaun Jackman <[email protected]>

phyml: migrate to brewsci/bio (#71)

33262f2a5f7173958b3eca4f18c4a60cc49643d1 authored almost 7 years ago by Torsten Seemann <[email protected]>

kent-tools: migrate to brewsci/bio (#64)

1009df6b9798a8ca21ec11fea7aa6810c7d94269 authored almost 7 years ago by Saulius Lukauskas <[email protected]>

andi: Remove the bottle for Linux (#70)

This bottle does not exist on Bintray.

347eb6028e198e8df472e4b79b57ab53b2d802fa authored almost 7 years ago by Shaun Jackman <[email protected]>

Trimal.migrate (#69)

7ac24fbfc9e37d32c46130a60a5a58529c619636 authored almost 7 years ago by Torsten Seemann <[email protected]>

barrnap: migrate to brewsci/bio (#68)

8040e90e7be4a00fe3d0155c128becde867d2004 authored almost 7 years ago by Torsten Seemann <[email protected]>

infernal: migrate to brewsci/bio (#67)

3ee71a2f0fda147d22985e8dc6074952b9e09917 authored almost 7 years ago by Torsten Seemann <[email protected]>

minced: migrate to brewsci/bio (#66)

1bf2ed5fdd227236be7f2032ed6968bf33090ae0 authored almost 7 years ago by Torsten Seemann <[email protected]>

aragorn: migrate to brewsci/bio (#65)

* aragorn: migrate to brewsci/bio

0dc69181791211f812055300914ced87b9950bc9 authored almost 7 years ago by Torsten Seemann <[email protected]>

repeatmasker: migrate to brewsci/bio (#61)

See https://github.com/brewsci/homebrew-bio/pull/82

b4ef3ed5bd08a0eea1f9c4a4a95816abb575e453 authored almost 7 years ago by Shaun Jackman <[email protected]>

rmblast: migrate to brewsci/bio (#62)

See https://github.com/brewsci/homebrew-bio/pull/83

ce0993ba33a3666f96cd57b1e9e81ca2c6f5dcb7 authored almost 7 years ago by Shaun Jackman <[email protected]>

trf: migrate to brewsci/bio (#63)

See https://github.com/brewsci/homebrew-bio/pull/84

f43ea12f6e2e137332276e28dab3f8042d5f4aa1 authored almost 7 years ago by Shaun Jackman <[email protected]>

mash: migrate to brewsci/bio (#60)

783e95cd37dff80ea7f4f5a764114dbe297aa0b3 authored almost 7 years ago by Torsten Seemann <[email protected]>

kmc: migrate to brewsci/bio (#59)

633f4be487b7b4c7ecdb676d13918b09dd79c80f authored almost 7 years ago by Torsten Seemann <[email protected]>

ntcard: migrate to brewsci/bio (#58)

See https://github.com/brewsci/homebrew-bio/pull/78

38232e744764e58165939a1f91211b7cf825bbbb authored almost 7 years ago by Shaun Jackman <[email protected]>

lighter: migrate to brewsci/bio (#57)

789468b76276a41ae24d03c496dbe8b1dfdf7539 authored almost 7 years ago by Shaun Jackman <[email protected]>

gaemr: Fix the test (#56)

9d18528bc8e55e5752e68cab28bdc459633ee530 authored almost 7 years ago by Shaun Jackman <[email protected]>

flash: migrate to brewsci/bio (#55)

bd2c63c0f630d638eaa07c565f0703f81d29c5aa authored almost 7 years ago by Shaun Jackman <[email protected]>

methpipe: Bump revision for the disabled bottle

Missing libraries:
/usr/local/opt/gsl/lib/libgsl.19.dylib

3bbf5a964882ea3eab4c0126f4692a542d3cc20f authored almost 7 years ago by Shaun Jackman <[email protected]>

sga: migrate to brewsci/bio (#53)

See https://github.com/brewsci/homebrew-bio/pull/67

9a45d05fc6307dcc1a5b2475fe5735c3914391a7 authored almost 7 years ago by Shaun Jackman <[email protected]>

sga: Disable bottle

Missing libraries:
libbamtools.so.2.4.1

e42ef59fdb4366d2ebf31c1c4d526bc04a6a4136 authored almost 7 years ago by Shaun Jackman <[email protected]>

sga: Depends on zlib [Linux]

da5dd214e2ce86430ff61ca2db1361e0801564ad authored almost 7 years ago by Shaun Jackman <[email protected]>

salmon: migrate to brewsci/bio (#45)

See https://github.com/brewsci/homebrew-bio/pull/51

dca2a336ecaf8673fd5a00069f5c3c654a669000 authored almost 7 years ago by Shaun Jackman <[email protected]>

methpipe: Disable bottle

Missing libraries:
/usr/local/opt/gsl/lib/libgsl.19.dylib

0ac53f658c554cb1a8624c4739befb36006610ec authored almost 7 years ago by Shaun Jackman <[email protected]>

stringtie: migrate to brewsci/bio (#52)

3b034d8b14384be7ca9de1dedd2119e93ec4fb09 authored almost 7 years ago by Shaun Jackman <[email protected]>

nanopolish: migrate to brewsci/bio (#50)

See https://github.com/brewsci/homebrew-bio/pull/62

1bceba6a9640c0a4066459979e66039da71f5cc6 authored almost 7 years ago by Shaun Jackman <[email protected]>

racon: migrate to brewsci/bio (#49)

See https://github.com/brewsci/homebrew-bio/pull/61

e1d69de68f164045df968d95be578da4f2860016 authored almost 7 years ago by Shaun Jackman <[email protected]>

trimmomatic: migrate to brewsci/bio (#51)

ae88d70f874e370b49d3f41b73d0b2759606eb0f authored almost 7 years ago by Shaun Jackman <[email protected]>

pilon: migrate to brewsci/bio (#48)

7bed94fd0d874a95a3050005cb590994cef20677 authored almost 7 years ago by Torsten Seemann <[email protected]>

minced: Depends on Java 1.8+

224db6a21660e531633eca73f63eed42a597ca83 authored almost 7 years ago by Shaun Jackman <[email protected]>

mothur: migrate to brewsci/bio (#44)

See https://github.com/brewsci/homebrew-bio/pull/47

df2a713838a94f6f1c65366d5b94a021aaf23664 authored almost 7 years ago by Shaun Jackman <[email protected]>

kat: migrate to brewsci/bio (#40)

See https://github.com/brewsci/homebrew-bio/pull/44

a7566f935051aa5284ca10f7c06479cc7741d680 authored almost 7 years ago by Shaun Jackman <[email protected]>

pathvisio: migrate to brewsci/bio (#42)

See https://github.com/brewsci/homebrew-bio/pull/45

3e2b26676512decf9c5c3ad5ff36c932dc3cacf7 authored almost 7 years ago by Shaun Jackman <[email protected]>

fwdpp: migrate to brewsci/bio (#37)

See https://github.com/brewsci/homebrew-bio/pull/41

c2764b830191702d5c8120dbddcc9fbf72905c61 authored almost 7 years ago by Shaun Jackman <[email protected]>

metaphlan: migrate to brewsci/bio (#38)

See https://github.com/brewsci/homebrew-bio/pull/42

0de37a61e5ab806bd5bd31d8f8c367591262cbec authored almost 7 years ago by Shaun Jackman <[email protected]>

libsequence: migrate to brewsci/bio (#39)

See https://github.com/brewsci/homebrew-bio/pull/43

eec5c7102596a1d39ff69e541264d922a1342cc3 authored almost 7 years ago by Shaun Jackman <[email protected]>

gaemr: Add a description

3ebe7860212eb67fae57955a03998fb00069599e authored almost 7 years ago by Shaun Jackman <[email protected]>

Use <<~EOS rather than <<-EOS.undent

a0f0fbbcd450652243a98c7c6abe5c10fe4e5260 authored almost 7 years ago by Shaun Jackman <[email protected]>

graphlan: Remove the dependency on biopython

aceb8a4268a6f03b9561c03de4e402e36881bd82 authored almost 7 years ago by Shaun Jackman <[email protected]>

gatk: migrate to brewsci/bio (#36)

See https://github.com/brewsci/homebrew-bio/pull/40

1eaffc3bdc1f21a4e05289e374f68178c98c237a authored almost 7 years ago by Shaun Jackman <[email protected]>

canu: migrate to brewsci/bio (#34)

33c25e3b6ce5ea49f4007abfa831bce198537a2f authored almost 7 years ago by Shaun Jackman <[email protected]>

mummer: migrate to brewsci/bio (#33)

See https://github.com/brewsci/homebrew-bio/pull/31

3e016d6ad7d1787b7501c51c24e868056de7cbc5 authored almost 7 years ago by Shaun Jackman <[email protected]>

tbl2asn: migrate to brewsci/bio (#32)

See https://github.com/brewsci/homebrew-bio/pull/30

09227bafd266937a6af2a9fc3ba5f003b9e0b592 authored almost 7 years ago by Shaun Jackman <[email protected]>

arcs: migrate to brewsci/bio (#31)

See https://github.com/brewsci/homebrew-bio/pull/29

06ba5baef3451aa9588d98a95cf40c2fcead69a6 authored almost 7 years ago by Shaun Jackman <[email protected]>

miniasm: migrate to brewsci/bio (#30)

63dac8561f8ded147c5afab76114d0f7d2231646 authored almost 7 years ago by Shaun Jackman <[email protected]>

maker: Depends on perl (#28)

30f4f9f7c477695ec36e4e52496c4db653ebbf97 authored almost 7 years ago by Shaun Jackman <[email protected]>

ucsc-genome-browser: Use <<~EOS

5bdb92eb46d3bc08e0504197942caeba888536b3 authored almost 7 years ago by Shaun Jackman <[email protected]>

meme: Use <<~EOS rather than <<-EOS.undent

8dc8ffde6f77db69d98a78ccbdaf16137351f85d authored almost 7 years ago by Shaun Jackman <[email protected]>

Comment out Perl package dependencies

925a824cb8d26696422ebebe6f99c9a8d5fd0048 authored almost 7 years ago by Shaun Jackman <[email protected]>

galsim: Depends on numpy

79c92e0c7f1924935095ab2e2e30ca11f3d44788 authored almost 7 years ago by Shaun Jackman <[email protected]>