github.com/sagemath/homebrew-science commits | Ecosyste.ms: OpenCollective

gubbins: remove dependency options of numpy pillow

Closes #6155.

Signed-off-by: Shaun Jackman <[email protected]>

99c353eeca9f3287f9ba1c065b98a377e7d7a82e authored over 7 years ago

poretools: update 0.6.0_6 bottle for Linuxbrew.

9945548b5b5a81e3bf9e44949b248c280d98d5d4 authored over 7 years ago

poretools: update 0.6.0_6 bottle.

e5250563f5fae28efc3ad96a2ec107127748796a authored over 7 years ago

poretools: fix problem with h5py

Closes #6189.

Signed-off-by: Shaun Jackman <[email protected]>

2631257c839488ee3f4b770e3f916dbc7bac018e authored over 7 years ago

simpleitk: update 1.0.1 bottle.

42296618716b542d80e9c9101993e7320f999cf8 authored over 7 years ago

simpleitk 1.0.1

Closes #6191.

Signed-off-by: ilovezfs <[email protected]>

e7e055ea118e0fd61e316ae4bacd7cd206d08e83 authored over 7 years ago

bam2wig 1.0.0 (new formula)

Closes #6190.

Signed-off-by: Shaun Jackman <[email protected]>

9fa47d585fe4ff74c4087daac18e00a344b60ac6 authored over 7 years ago

shark: update 3.1.4 bottle for Linuxbrew.

0710518a1ff5b32e58a014b67f9a56acdc84cc52 authored over 7 years ago

shark: update 3.1.4 bottle.

14e95dc23a585c07953ade4595d9fa53de8f7f23 authored over 7 years ago

shark 3.1.4

Closes #6182.

Signed-off-by: ilovezfs <[email protected]>

e746da077f60e2ff5396322a09e9268e95633427 authored over 7 years ago

pillow: update 4.2.1_1 bottle for Linuxbrew.

Closes #6180.
Signed-off-by: Shaun Jackman <[email protected]>

0c262eb5a1835a493c5629745d7d4fcfa81a2148 authored over 7 years ago

packmol: migrate to homebrew/core

d161efe437267fcbe56815305696f1293d1655ed authored over 7 years ago

nlopt: migrate to homebrew/core

9c2b2f583d93308a5c2a9458b985a48f14c8888e authored over 7 years ago

gmsh: migrate to homebrew/core

1b4eac52b05b35ee1daff42a01fd4caa953dd4c6 authored over 7 years ago

gromacs: migrate to homebrew/core

ce769242ab6ea0630b4363a5a7da23ddc6daa722 authored over 7 years ago

ncview: migrate to homebrew/core

cf010c7799d47ff743fcdf0ec798adaf24d0be4e authored over 7 years ago

cppad: migrate to homebrew/core

1451e48831603f4613625a85035b3a843872ac65 authored over 7 years ago

quast: depends on matplotlib for Linux (#6156)

2432b2ae17b5197b9ae6811d6e76c1d448aa7a95 authored over 7 years ago

petsc: remove sundials conflict

7df000c994e85b7821b07f003df85d34514e1a54 authored over 7 years ago

opencv, opencv3: migrate to homebrew/core (#6126)

6c38af15f22ff24e2b398970bc4eb102bfa2b7d2 authored over 7 years ago

clinfo: migrate to homebrew/core

2661d47f0b07a69f6c9bab7ffd52922412af59e1 authored over 7 years ago

clblas: migrate to homebrew/core

c0155357293ae35f1beaa5a0d727e65b5edeaa0a authored over 7 years ago

clfft: migrate to homebrew/core

b7976e13c6ed16b44a44047ad1822b499020f957 authored over 7 years ago

pcb: migrate to homebrew/core

10394d349b4ffd07b92d866eb83f367da766d69c authored over 7 years ago

igraph: migrate to homebrew/core

494df3ea1fb2dd1cbe0d361a67b8109003c735b9 authored over 7 years ago

pcb: migrate to homebrew/core

e670a82576e65429d9ce0536141d2f59d0cfd87a authored over 7 years ago

datamash: migrate to homebrew/core

93b7836de7429b82c256f2c8da9d5ec148427dbe authored over 7 years ago

nco: migrate to homebrew/core

22c1b8ff36baa3ab9f8afab8d37dc14bf44cf2f1 authored over 7 years ago

sratoolkit: update 2.8.2-3 bottle for Linuxbrew.

f9e5260a35e299952d606e40d9781a423e630959 authored over 7 years ago

sratoolkit: update 2.8.2-3 bottle.

d1f79dc89deb74b3a090d401c212121e859ba0d4 authored over 7 years ago

sratoolkit 2.8.2-3

Closes #6167.

Signed-off-by: ilovezfs <[email protected]>

0c79a23414491eec242691c3f37fa4e6b002362e authored over 7 years ago

asl: remove stale alias

1157738248197ac82e1682008e07f6e0b8ebeb95 authored over 7 years ago

hypre: migrate to homebrew/core

3237f38e6f7a9d8edadb9a8ce751c95726a24091 authored over 7 years ago

gmt, gmt4: migrate to homebrew/core

557d91dea56d924ae2b04ccb17e3f4cde30403a4 authored over 7 years ago

ampl-mp: migrate to homebrew/core

ec732438f74d1df28b524b15a36301b35de072fc authored over 7 years ago

libmatio: migrate to homebrew/core

d16a47d22cc391c173a969760630c39006995e62 authored over 7 years ago

vislcg3: update 1.1.0 bottle.

fd31c10014599e01c9ccbfd1517e5c844b4e3c24 authored over 7 years ago

vislcg3 1.1.0

also serves as revision for icu4c

Closes #6165.

Signed-off-by: ilovezfs <[email protected]>

50e58a3c16358a24313b810a201fb556f417b8f3 authored over 7 years ago

bedops: update 2.4.28 bottle for Linuxbrew.

7162b895f8138673b17dfd26b7035cb8521a5f33 authored over 7 years ago

bedops: update 2.4.28 bottle.

1d17a388857829e6e5dd6f3cd370f9ef2a370513 authored over 7 years ago

bedops 2.4.28

Closes #6158.

Signed-off-by: ilovezfs <[email protected]>

bac178905664894b0fa99632cb7ace2b6b4f1570 authored over 7 years ago

wopr: add 1.36.1 bottle for Linuxbrew.

f11a9cc845206b8d2b1407dbf04cad94a409c061 authored over 7 years ago

wopr: add 1.36.1 bottle.

ed3e79c6016df33e7e6b96d2499f0ca686308322 authored over 7 years ago

wopr 1.36.1

Closes #6162.

Signed-off-by: ilovezfs <[email protected]>

deb81f1446bda818941ec6924d4076988bdf29e1 authored over 7 years ago

timbl: update 6.4.9 bottle for Linuxbrew.

829fe9e2f11a396fef0b596fc1f9be7a453a2844 authored over 7 years ago

timbl: update 6.4.9 bottle.

b294b3fc02a8716c8e1e912fb22702b1b2cc5ba1 authored over 7 years ago

timbl 6.4.9

Closes #6161.

Signed-off-by: ilovezfs <[email protected]>

92e0f7e01ad156c2948c3b5885431f3e993ee6b0 authored over 7 years ago

ucto: update 0.9.6 bottle.

568392ceed4e099ef358d97d4eba6e7ae7dcc27c authored over 7 years ago

ucto: update 0.9.6 bottle for Linuxbrew.

b8188d8a228ef568ec422e70d60db20a282cfced authored over 7 years ago

ucto 0.9.6

Closes #6163.

Signed-off-by: ilovezfs <[email protected]>

33196b79e5efef860e7f8fb48b18ed081291693e authored over 7 years ago

libfolia: update 1.8 bottle for Linuxbrew.

e04357194556c45fa34453f1fd7892ea7621bdbd authored over 7 years ago

libfolia: update 1.8 bottle.

1ec91aa50fe50041d70070419dfaf672f148f8a0 authored over 7 years ago

libfolia 1.8

Closes #6160.

Signed-off-by: ilovezfs <[email protected]>

a901172de2b5931d86145358f6448502a9f67dc3 authored over 7 years ago

ticcutils: update 0.15 bottle for Linuxbrew.

e2758d074b425e1dacf6b4598c48ac2d6a3b345d authored over 7 years ago

ticcutils: update 0.15 bottle.

6892c3dc8446ae74571955a36874cf0787bd9dd4 authored over 7 years ago

ticcutils 0.15

Closes #6159.

Signed-off-by: ilovezfs <[email protected]>

c775e47392cd12601de43ff285f147e96d5dad2e authored over 7 years ago

mathgl: Fix sha256 of Linux bottle

Closes #6154.

Signed-off-by: Michka Popoff <[email protected]>

ddafab7ed88da5d5a15bfb50645dbcc7d8e3aba5 authored over 7 years ago

pcl: migrate to homebrew/core

467ea5de653e1a92c53292dbf25262d8a4c745e3 authored over 7 years ago

transdecoder: update 4.1.0 bottle for Linuxbrew.

29bef7624048c64310dccdebf2972850374c0ec4 authored over 7 years ago

transdecoder: update 4.1.0 bottle.

0b4f9070edd4d10120317cea19ab40837dc92028 authored over 7 years ago

transdecoder 4.1.0

Closes #6148.

Signed-off-by: ilovezfs <[email protected]>

cb64f81347bc657788b039f09138d358d2646afc authored over 7 years ago

unicycler: add 0.4.0 bottle for Linuxbrew.

7d6025d63b97e3f4d92b83c23f91690f950e6d98 authored over 7 years ago

unicycler: add 0.4.0 bottle.

81edf7215fdedfb9b731f019822f3e8dfc27cae1 authored over 7 years ago

unicycler 0.4.0 (new formula)

Hybrid assembly pipeline for bacterial genomes
https://github.com/rrwick/Unicycler

Closes #6146...

b527ccaceb04d29b2751657f0fffdc2d4b197fd0 authored over 7 years ago

delly: update 0.7.7 bottle for Linuxbrew.

Closes #6145.
Signed-off-by: Shaun Jackman <[email protected]>

354b3f84ca2af7f00e3c5bd1c8aaeec47625b002 authored over 7 years ago

plink2: Add head

a9e842b3c09223dd6d9e30fa9cd514be1e69b319 authored over 7 years ago

plink2: update 1.90b3_2 bottle for Linuxbrew.

2e07be712bcf83d52a7e1d1e412103a692d885ac authored over 7 years ago

plink2: update 1.90b3_2 bottle.

1ab6bb4dcfdade634a12895e1e240f286a28f7cf authored over 7 years ago

plink2: Depends on openblas for Linuxbrew

Closes #6142.

Signed-off-by: Shaun Jackman <[email protected]>

ff433a925ca1bd7caf16217b1391d3e9d8f3acb4 authored over 7 years ago

scram: update 0.15.0 bottle.

5b2732a7cb235a216b6a705acd71dab8a2490442 authored over 7 years ago

scram 0.15.0

Closes #6138.

Signed-off-by: Michka Popoff <[email protected]>

c4f2e7391c655a02dd9c962cd66bedf7bef8bb83 authored over 7 years ago

root & root6: migrate to homebrew/core

027d2df593beec5fb0ac3a0fe864e36c022a4152 authored over 7 years ago

sundials: migrate to homebrew/core

ebebbb897c901a0e5cfaccade083a80949f4b43b authored over 7 years ago

transdecoder: update 4.0.3 bottle for Linuxbrew.

634efc0e77999b7299e86b2be9a912a161efdcc8 authored over 7 years ago

transdecoder: update 4.0.3 bottle.

871573cbdcba6c15f3aa334b70342a0860c563d3 authored over 7 years ago

transdecoder 4.0.3

Closes #6141.

Signed-off-by: ilovezfs <[email protected]>

47fea2ac3934ff27f0ae4408ca858bc8e5538ced authored over 7 years ago

nco: update 4.6.8 bottle.

c42f757ee5ac4e79a2a8e29f65b2a9c2cd4a3f4b authored over 7 years ago

nco 4.6.8

Closes #6140.

Signed-off-by: ilovezfs <[email protected]>

1a3045fd2cd2adefb90aacf590225fdf6ebf4065 authored over 7 years ago

amos: Build a bottle for Linuxbrew

939d58adaa6179b0c18b2b71ec24c6aa3ebecd7c authored over 7 years ago

amos: Move doi and tag after url

28f4328ef1cb4d6c6f713d437fe260d9bd3a9b86 authored over 7 years ago

amos: add 3.1.0_1 bottle for Linuxbrew.

Closes #6135.
Signed-off-by: Shaun Jackman <[email protected]>

e7b397050757b4ec57c535daac22fee1e10fa4b9 authored over 7 years ago

dealii: update 8.5.1 bottle.

c3eadffa7a75a0b64351e5f6747d064d27af96fe authored over 7 years ago

dealii 8.5.1

Closes #6137.

Signed-off-by: ilovezfs <[email protected]>

48fba37696001baea75762a9431bf190ae07dc69 authored over 7 years ago

canu: update 1.6 bottle for Linuxbrew.

a147c15f80c52746d783ff36028cf326d7923e13 authored over 7 years ago

canu: update 1.6 bottle.

b8dbd6787a528c6e5cd2e0501d401e75957886b6 authored over 7 years ago

canu 1.6

Closes #6136.

Signed-off-by: ilovezfs <[email protected]>

bf515069d8976a529993d5ff81914e5be27955a8 authored over 7 years ago

alembic: update 1.7.3 bottle for Linuxbrew.

c5837462fc73a3ce99a4c89544d404f588004090 authored over 7 years ago

alembic: update 1.7.3 bottle.

3596e253d213b056c6b052f0a90acc12f7435794 authored over 7 years ago

alembic 1.7.3

Closes #6133.

Signed-off-by: ilovezfs <[email protected]>

83eaf8f6f11384837255848c04c9d350b4336bb3 authored over 7 years ago

humann2: update 0.4.0_1 bottle for Linuxbrew.

c65027526c766c69b189165dd8797c8b6f6fae3c authored over 7 years ago

humann2: update 0.4.0_1 bottle.

fd6789f63243566439cdaa577586acabd2462cc7 authored over 7 years ago

humann2: rebuild the bottle because of new python

Closes #6134.

Signed-off-by: Shaun Jackman <[email protected]>

ccb25c0f51acda9466466c03eabc3e719510a335 authored over 7 years ago

nlopt: update 2.4.2_2 bottle.

0df27fed202136d20a0411c85fd5c864746b2715 authored over 7 years ago

nlopt: update 2.4.2_2 bottle for Linuxbrew.

f29542fd4fb8306241a00316e8c7bea1669f8630 authored over 7 years ago

nlopt: fix `brew test`

Closes #6115.

Signed-off-by: Shaun Jackman <[email protected]>

75e1141acdedb7feaacce79c14d3c42d29ac063d authored over 7 years ago

Revert "libctl: add 3.2.2 bottle for Linuxbrew."

This reverts commit 8506fdff6f680417a1739dcf89e8c2c8923a7fa2.

There is no Linux bottle for libc...

e5208e88b25450e087b7ef340fbd30a43eebbb2d authored over 7 years ago

transdecoder: update 4.0.1 bottle for Linuxbrew.

bc4de04ad8938c6c46711f13061bb0de82d29317 authored over 7 years ago

transdecoder: update 4.0.1 bottle.

9676c2e4639d78677786bb2172f2343ad8c1463e authored over 7 years ago

transdecoder 4.0.1

Closes #6131.

Signed-off-by: ilovezfs <[email protected]>

3439636736aa62e567c0989a93b81d738662e4bf authored over 7 years ago

diamond: update 0.9.10 bottle for Linuxbrew.

17786790de5206a5838a278534b18818cec9a42b authored over 7 years ago