github.com/sagemath/homebrew-science commits | Ecosyste.ms: OpenCollective

cutadapt 1.14

Closes #6240.

Signed-off-by: ilovezfs <[email protected]>

aac6ed2527224d8259f5571231064acb5640bd94 authored over 7 years ago

artemis 16.0.17 (#6237)

689b77a4cbde4016db427b0a0459249fcfbb29d3 authored over 7 years ago

boost-compute: update 1.65.0 bottle.

dbe1f392a3834e2f4265647baa244327d7c6f0c1 authored over 7 years ago

boost-compute 1.65.0

Closes #6239.

Signed-off-by: ilovezfs <[email protected]>

1ad92ca04487e0ebc956e1276d8e1ec61f04f8ee authored over 7 years ago

bali-phy: update 2.3.8 bottle for Linuxbrew.

80f3dc64c965c6a4ad0012ba3930cb8f7e2212ea authored over 7 years ago

bali-phy: update 2.3.8 bottle.

6bcbb9d5dc7ff09f3b2281318375737d036646af authored over 7 years ago

bali-phy 2.3.8

Closes #6238.

Signed-off-by: ilovezfs <[email protected]>

6eebca5a11a13403348a1bd640c2a5a4b4f152ba authored over 7 years ago

gnudatalanguage: update 0.9.7_3 bottle for Linuxbrew.

8b4f7d483303169df9adc9df53d9b02670bc2194 authored over 7 years ago

gnudatalanguage: update 0.9.7_3 bottle.

369fdddfd33934ab04b9740d42022fcaec38a986 authored over 7 years ago

gnudatalanguage: Fails with GCC 5.x

Conflict with the :fortran dependency for netcdf

Signed-off-by: Bob W. Hogg <[email protected]>
...

2ce5148a74b87fa8be0209a195a418242deb3281 authored over 7 years ago

gnudatalanguage: Conflicts with plplot

Both install a pltek binary.

Signed-off-by: Bob W. Hogg <[email protected]>

05884db0ca3369f6f73f45695ea8e3e7ec7f5b28 authored over 7 years ago

nanopolish: update 0.7.2 bottle for Linuxbrew.

37594f2a20514ebd63c79a9e1a2c779973b6e208 authored over 7 years ago

nanopolish: update 0.7.2 bottle.

3b4d7ee9ed6a18efb6a6fbfd615cb303b606abcc authored over 7 years ago

nanopolish 0.7.2

Closes #6222.

Signed-off-by: Michka Popoff <[email protected]>

0111e0e12db2684763c60bf96178c5843d22a9f9 authored over 7 years ago

picard-tools 2.11.0 (#6233)

47185dfd3ca10e35965be19035f3aadcbdba9362 authored over 7 years ago

openimageio: update patch hash

I neglected to update the SHA256 hash of the patch when fixing
the `?full_index=1` patch audit w...

8d0065a165309fe5bff60661f2b54caf8c0ee7b0 authored over 7 years ago

openimageio: revision for boost

* Add an upstream patch for Boost 1.65 https://github.com/OpenImageIO/oiio/pull/1753
* Migrate o...

57f6335d1324d089027d59a2cc2ecbebe976d0c9 authored over 7 years ago

openimageio: update 1.7.16_2 bottle.

1db6d724ed400a5d944f323481099880e1113afc authored over 7 years ago

tap_migrations: remove pillow (#6231)

4c4ff27667502c46d32100ce667b2dd69edb33c8 authored over 7 years ago

field3d: update 1.7.2_2 bottle.

3386ae27547c03de61d1b3f3dc6870577cf221a8 authored over 7 years ago

field3d: revision 2 for boost

Closes #6226.

Signed-off-by: Jonathan Chang <[email protected]>

b49457255fc6522472cdb654d13eb854b8c25d67 authored over 7 years ago

lightstringgraph: update 0.4.0_2 bottle for Linuxbrew.

2ed9b940d0077926773b1770d400f59abecfe4a5 authored over 7 years ago

lightstringgraph: update 0.4.0_2 bottle.

be6f3551a597407e4c0bbc954d195ce45b5fe816 authored over 7 years ago

lightstringgraph: revision 2 for boost

Closes #6227.

Signed-off-by: Jonathan Chang <[email protected]>

9c275b8c93d71e0fe6573f16273bc1c0caca01c9 authored over 7 years ago

ckon: update 0.7.1_4 bottle.

3bb46983456f5e04a3b0c8e103fc14072571c33d authored over 7 years ago

ckon: specify path to Boost

Closes #6224.

Signed-off-by: Jonathan Chang <[email protected]>

58ce3e773bb7705d461954e9df8e01a5c21ed7ae authored over 7 years ago

ckon: revision 4 for boost

077ca6aa4a73a65a076661ebefe7bc46cbeda81d authored over 7 years ago

alpscore: update 1.0.0_2 bottle for Linuxbrew.

daef4a43891a260432d0d414743620f77a708ee2 authored over 7 years ago

alpscore: update 1.0.0_2 bottle.

f45570245b86b364079089c4f6fde838c4cee032 authored over 7 years ago

alpscore: revision 2 for boost

Closes #6223.

Signed-off-by: Jonathan Chang <[email protected]>

e9ba774732b9edda29f80b6d59e251ff5ccd633a authored over 7 years ago

trf 4.09 (#6214)

b9b1b2e7a4d0c0564dd214c6db370303969f4f76 authored over 7 years ago

cdo: update 1.9.0 bottle for Linuxbrew.

868fd6c5d2cabe39c3357aa98451202a9f268d72 authored over 7 years ago

cdo: update 1.9.0 bottle.

9f719a7d96960b8216b50215fed0a3af4983b0dd authored over 7 years ago

cdo 1.9.0

Closes #6218.

Signed-off-by: Jonathan Chang <[email protected]>

e4d38c1e2646f06ef52b32c3431a8305414311c4 authored over 7 years ago

vsearch: update 2.4.4 bottle for Linuxbrew.

2225376bb3299648ebfd22132d9692bd6de8216f authored over 7 years ago

vsearch: update 2.4.4 bottle.

230875bb542202864fc4cf542c478eabdbd361f4 authored over 7 years ago

vsearch 2.4.4

Closes #6219.

Signed-off-by: Jonathan Chang <[email protected]>

de3f007709d125a7a931f48fa92ff9d9fdbc8b24 authored over 7 years ago

fasttree: update 2.1.10 bottle for Linuxbrew.

1e190741fa3be487b5b25e898320e0f51db65080 authored over 7 years ago

fasttree: update 2.1.10 bottle.

4396dc52a78caad114f5e685024e477424246651 authored over 7 years ago

fasttree 2.1.10

Closes #6215.

Signed-off-by: Jonathan Chang <[email protected]>

bd1be9cfdc63fe9ca8caac9cc07953158b64facf authored over 7 years ago

pillow: migrate to homebrew/core

052866df534617aabffe4eda386d1143b90e95ba authored over 7 years ago

pspp: update 1.0.1 bottle for Linuxbrew.

3d8ef768e0eb40e7603f64e1366aa5459ba242cc authored over 7 years ago

pspp: update 1.0.1 bottle.

1f9d4097c09d8806860873f1e54ef6fba2c43741 authored over 7 years ago

pspp 1.0.1

Closes #6176.

Signed-off-by: ilovezfs <[email protected]>

478751568e6a06b25a8091dc60200cbcd03ea661 authored over 7 years ago

siril: update 0.9.6_3 bottle.

da9a59d1c3f44caa90b8abc1a79ae1f6aef2a103 authored over 7 years ago

siril: depend on opencv@2

Closes #6188.

Signed-off-by: Michka Popoff <[email protected]>

f7da4e9b4e2a6330c429416c118d8b030be739e2 authored over 7 years ago

insighttoolkit: update 4.12.1 bottle for Linuxbrew.

0e78e2d436f1ed911b1b5b9f33319eb058a68180 authored over 7 years ago

insighttoolkit: update 4.12.1 bottle.

20c2a01f1c92229169b242b5d9ad539794b96060 authored over 7 years ago

insighttoolkit 4.12.1

depend on opencv@2

Closes #6187.

Signed-off-by: Michka Popoff <[email protected]>

890b7f42480dd7a604af089cda5deecb73dbe117 authored over 7 years ago

Merge branch 'master' of https://github.com/Homebrew/homebrew-science

a42ed668fcb708704c2739a3db58fd3dfa394a2c authored over 7 years ago

lighter: update 1.1.1_1 bottle.

91b163804c93e5c2776aafb61b7790f1f99e1e18 authored over 7 years ago

lighter 1.1.1 revision 1 (libz + -O2 compile)

Closes #6211.

Signed-off-by: Torsten Seemann <[email protected]>

082ee2d22d60c5c71c0d94f91691b362c06a9e10 authored over 7 years ago

prokka 1.12_1 (remove bundled binaries + rpath-ing)

Closes #6210.

Signed-off-by: Torsten Seemann <[email protected]>

1679bd92e567d27fdf17e5c392a9b41265281592 authored over 7 years ago

bwa: Move the comments

6d2eb385cef57cdc576e9233b78dfe0fc2117c86 authored over 7 years ago

Migrate to CircleCI 2.0

90341cd303b808ad1df8cf934ee2c2c92d60d25c authored over 7 years ago

lrsim: add 1.0 bottle.

d080cde00f795a9caf44736097ba896a4f5df101 authored over 7 years ago

lrsim 1.0 (new formula)

10x Genomics Reads Simulator
https://github.com/aquaskyline/LRSIM

Closes #6050.

Signed-off-by:...

4f35ff36ac42dd5047508af87c90c3b5020e1959 authored over 7 years ago

lrsim: add 1.0 bottle for Linuxbrew.

a0f0af5f076ff7c3f083ac3877d56dddf025d710 authored over 7 years ago

salmon: update 0.8.2 bottle for Linuxbrew.

a40d258167ceeb59e0d23eb2fecc2271a1216f68 authored over 7 years ago

salmon: update 0.8.2 bottle.

dc85cbade46183ec2b9c2eb64b3ee54eb7457867 authored over 7 years ago

salmon 0.8.2

Closes #6184.

Signed-off-by: Michka Popoff <[email protected]>

1f802f8a6d887b51ce8aea4f9b9ed46ad22324bc authored over 7 years ago

blast: update 2.6.0_2 bottle for Linuxbrew.

c1054ec4ae4bcb7577ae917f54a0a23129ac80e0 authored over 7 years ago

blast: update 2.6.0_2 bottle.

4d2fa0b6fc44093ca5e3606e433bf460f58680fa authored over 7 years ago

blast: remove jpeg and png dependencies

brew linkage reports that blast is never linked against these libraries.
There seem to be some c...

426bf0a75a21cb5c49237a384bba73f22b7d770e authored over 7 years ago

augustus: update 3.2.2_3 bottle for Linuxbrew.

d3db5b0fcecb3d40209aec7a7f5bdf2f0d873300 authored over 7 years ago

augustus: update 3.2.2_3 bottle.

f8b086bfd060bd83e381bf158ed96e37ac5f9312 authored over 7 years ago

augustus: bump revision for boost

Closes #6202.

Signed-off-by: Shaun Jackman <[email protected]>

1e5c8e21fa7fa37bcf8d62b1fd884e1cb483fa45 authored over 7 years ago

tophat: update 2.1.1_5 bottle for Linuxbrew.

c0001e4a7b61726873f2b4dbafb9dd9c443e4061 authored over 7 years ago

tophat: update 2.1.1_5 bottle.

e829810a15c9c1a7b25904c5c3447f2c25292243 authored over 7 years ago

tophat: bump revision for boost

Closes #6208.

Signed-off-by: Shaun Jackman <[email protected]>

4f2e136f26022c124c656925f73ceefcdbe7007d authored over 7 years ago

mothur: update 1.39.5_1 bottle for Linuxbrew.

dbafb9dbc0a546573f9540894ec019def2686210 authored over 7 years ago

mothur: update 1.39.5_1 bottle.

837a0cce6d2f9cac21e356c55cbddd4c0e434a7f authored over 7 years ago

mothur: bump revision for boost

Closes #6207.

Signed-off-by: Shaun Jackman <[email protected]>

8324c0ff14bfa4920eb658a321eab51b18e802a7 authored over 7 years ago

express: update 1.5.1_7 bottle for Linuxbrew.

d66742357394aa7e37db6c99e67c263c8cd2759d authored over 7 years ago

express: update 1.5.1_7 bottle.

747cc24154d74fcd020362de236091142819fd24 authored over 7 years ago

express: bump revision for boost

Closes #6206.

Signed-off-by: Shaun Jackman <[email protected]>

b2222829036cc1f4f413630e3a6648b179155fcc authored over 7 years ago

delly: update 0.7.7_1 bottle for Linuxbrew.

58abc6a5da1df8fc60069142e72704b8cf16fef9 authored over 7 years ago

delly: update 0.7.7_1 bottle.

8562fc05aa68f79f6883d7deca1e7a348b82bbd7 authored over 7 years ago

delly: bump revision for boost

Closes #6205.

Signed-off-by: Shaun Jackman <[email protected]>

8d85889ed1b26594fe1bd5afb6a0c50b2f11942d authored over 7 years ago

bless: update 0.24_3 bottle.

8587e1d9747e8dc9f1d7e7e12eb1040e0057ccdc authored over 7 years ago

bless: update 0.24_3 bottle for Linuxbrew.

1fa23f688c2dd4f2f8ad78d5c2b8877e9e7fa0c5 authored over 7 years ago

bless: bump revision for boost

Closes #6203.

Signed-off-by: Shaun Jackman <[email protected]>

62ce8091b18e2645770ba220e9e9157266786c23 authored over 7 years ago

openalpr: update 2.3.0_1 bottle.

6c1f26f02e96fe60202f9461e1ea7a750f0d4c8e authored over 7 years ago

openalpr: depend on opencv@2

and remove jpeg dependency: jpeg is provided by opencv@2,
and openalpr does not link against it,...

cb7fbf3ba711b43a9cd9652fb303d3fdea0af3e1 authored over 7 years ago

visp: update 3.0.1_4 bottle for Linuxbrew.

e7d5877c22ca0d6e28aa8c4f6e3455d88e9825f1 authored over 7 years ago

visp: update 3.0.1_4 bottle.

035e67216ca05c8dc001f5e3ded67138a23436b0 authored over 7 years ago

visp: depend on opencv

Closes #6198.

Signed-off-by: Jonathan Chang <[email protected]>

933242cd61abf2a05be81e4470b8df7e8b2facc5 authored over 7 years ago

openbr: update 1.1.0_1 bottle.

8383beb6570e8694fa82e1337fd6a6adbdb2e0b4 authored over 7 years ago

openbr: depend on opencv@2

Closes #6195.

Signed-off-by: Jonathan Chang <[email protected]>

66af47657d05f8bb6c7ed69ee2958d53c4cac4d7 authored over 7 years ago

cvblob: update 0.10.4_1 bottle for Linuxbrew.

792a636e9970c4a589e5d3ee47ad8821655e055e authored over 7 years ago

cvblob: update 0.10.4_1 bottle.

65decd04f1b9ff613c19a09768dee17f8b4aea1c authored over 7 years ago

cvblob: depend on opencv@2

Closes #6194.

Signed-off-by: Jonathan Chang <[email protected]>

eea96111cabcb6115779a0a120928ea05630a3eb authored over 7 years ago

unicycler: update 0.4.1 bottle for Linuxbrew.

65a2dde1bd72e4d01ebdaad5c193a253c26b76ff authored over 7 years ago

unicycler: update 0.4.1 bottle.

351b776870aac538420036c15684777f4bb49f85 authored over 7 years ago

unicycler 0.4.1

Closes #6199.

Signed-off-by: Shaun Jackman <[email protected]>

9ace32255099afc05539ab2941d8d5aecbcd58dc authored over 7 years ago

mir-prefer: Depends on :python [Linux] (#6181)

Signed-off-by: Bob W. Hogg <[email protected]>

3be2949eb355c479d500e6e3acd241f41f04fc43 authored over 7 years ago

repeatmasker: rebuild

Closes #6166.

Signed-off-by: Michka Popoff <[email protected]>

83c257222f9e6d0886e4a7e50b4e3c7f08ab4b61 authored over 7 years ago

repeatmasker: update 4.0.7_1 bottle.

335cdbf98e1f03a3aab7ab998db49d90bf6222ef authored over 7 years ago

repeatmasker: update 4.0.7_1 bottle for Linuxbrew.

e86fcf4814f4308f6feeb0ef7b13851ea3f79a0a authored over 7 years ago

gubbins: update 2.2.0_2 bottle for Linuxbrew.

3800ac8930d00375ca4616dde150081201426ccc authored over 7 years ago