github.com/sagemath/homebrew-science commits | Ecosyste.ms: OpenCollective

boost-compute 1.65.1

Closes #6294.

Signed-off-by: ilovezfs <[email protected]>

dc5acbfa1579d7fe25602498f04b37920b293b77 authored over 7 years ago

lastz: Use GitHub URL (#6281)

dda294d0b3384e17ef9c50d93b562d483a86408e authored over 7 years ago

kent-tools: update 353 bottle.

a372b8522c2fd40a12e609234ca10bcf8caac27c authored over 7 years ago

kent-tools: add bottle for Linux

e3d3cb46969ec130b1eeb04a0b8a4048c243968e authored over 7 years ago

kent-tools: add dependencies for Linux

Closes #6288.

Signed-off-by: Jonathan Chang <[email protected]>

489b1b5c6fd2a1d28cffd4061f826e749618d9f0 authored over 7 years ago

kent-tools 353

8101ae5883e5a09b2e0634a861a0e44c2a799353 authored over 7 years ago

astrometry-net: update 0.72 bottle for Linuxbrew.

629ac72a0a44076aba93518ddd4e76e4f8ab49c1 authored over 7 years ago

astrometry-net: update 0.72 bottle.

c26504eec623079987919af8702624a8219c3bac authored over 7 years ago

astrometry-net 0.72

Serves also as revision for gsl

The wget dependency is only used on macOS.
On Linux, it conflic...

e5168de17082317031aba5e6d1e8ade7ac7e3953 authored over 7 years ago

nextflow 0.25.7

Closes #6286.

Signed-off-by: Jonathan Chang <[email protected]>

a2bdf8d71060281db905027d57b732f69adae534 authored over 7 years ago

bowtie2: update 2.3.3 bottle for Linuxbrew.

10690bcf0fc8c1bebecb150d84a768207b598a61 authored over 7 years ago

bowtie2: update 2.3.3 bottle.

f82d4ccd480212d26bbdb57d990546f1ba0c262a authored over 7 years ago

bowtie2 2.3.3

Closes #6285.

Signed-off-by: Jonathan Chang <[email protected]>

f60117404739c8290caa2a674b9ddb7e25601ac0 authored over 7 years ago

spades: update 3.11.0 bottle for Linuxbrew.

d0b9b613efba01b7ec22c76a87a3935e5b800235 authored over 7 years ago

spades: update 3.11.0 bottle.

82889d4921eb6cc51631effbc0fadf2b7f18a3b0 authored over 7 years ago

spades 3.11.0

Closes #6287.

Signed-off-by: Shaun Jackman <[email protected]>

7aaa8fa07acbb46583a83f953c1f96ad3a5f1213 authored over 7 years ago

cmdstan: update 2.17.0 bottle.

b5d19089049a3f6226b671fbd247faff1bccf47b authored over 7 years ago

cmdstan 2.17.0

Closes #6283.

Signed-off-by: ilovezfs <[email protected]>

9bbbcb1e29312ee1022e47ad29d1c7b012c00726 authored over 7 years ago

gubbins: update 2.2.2 bottle for Linuxbrew.

2453033a2ae9dc6a0fbfdcea9b51dff6d6c440fd authored over 7 years ago

gubbins: update 2.2.2 bottle.

e4c1daa04d1d56ae472f90d6f911e69b8bd515b9 authored over 7 years ago

gubbins 2.2.2

Closes #6279.

Signed-off-by: ilovezfs <[email protected]>

37faa7652056e32640c328197f66db13253632ad authored over 7 years ago

abinit: update 8.4.3 bottle for Linuxbrew.

aa1659f99dce4153602fb1569d1903e7c57bfe95 authored over 7 years ago

abinit: update 8.4.3 bottle.

ebe2beda1b434f71d511b22b7e4bee8b096a8a18 authored over 7 years ago

abinit 8.4.3

Closes #6278.

Signed-off-by: ilovezfs <[email protected]>

f6aae303969d85e39fcd83e454da7826944858d2 authored over 7 years ago

itensor: update 2.1.1 bottle for Linuxbrew.

08f34384dcb00d18c1c0599f2baaa5bfb2a5b1f5 authored over 7 years ago

itensor: update 2.1.1 bottle.

3aaf7661a07727a74d009457c90ee20fc1c2eda6 authored over 7 years ago

itensor 2.1.1

Closes #6236.

Signed-off-by: Jonathan Chang <[email protected]>

c7d7b62111510f6125b5d3595a071f257b3dc442 authored over 7 years ago

statismo: remove formula (#6273)

This formula has been broken since some time,
as it fails to build with newest hdf5 and boost v...

5bde1ee477afc13a8eff305879d9ea8e2cf89518 authored over 7 years ago

openimageio: update 1.7.17 bottle.

48ee9871aa4c25877894aff515d2d0ae008f103a authored over 7 years ago

openimageio 1.7.17

Closes #6274.

Signed-off-by: ilovezfs <[email protected]>

2135e73c7b2f8d1e5209ff4a4a541fcbe69c1115 authored over 7 years ago

gubbins: update 2.2.0_3 bottle for Linuxbrew.

a9f9591e62aec3b890c995365f40fe00c4d8224f authored over 7 years ago

gubbins: update 2.2.0_3 bottle.

145aa441340ecfd065ae616c2f9bc931a3cae689 authored over 7 years ago

gubbins: remove "with-double" build option from fasttree dependency

"with-double" is now the default for fasttree.

Closes #6276.

Signed-off-by: ilovezfs <ilovezfs...

074c2ae509cac41a8017a72b2bab3a84ba71a7e3 authored over 7 years ago

gubbins: vendor Pillow (#6277)

23ab9b9f4717c782d993c782ee0b6833222e7a96 authored over 7 years ago

cmor: update 3.2.6 bottle.

24e312b8100b0d4e5d95548a14f5263ed022f90b authored over 7 years ago

cmor 3.2.6

Closes #6272.

Signed-off-by: ilovezfs <[email protected]>

ce7a4fac7662892cdff8a00b0eede84db0ba3eb3 authored over 7 years ago

cufflinks: bump revision for boost

Closes #6204.

Signed-off-by: Shaun Jackman <[email protected]>

15fd15160925336cbd1b1ed9400400a8c93d8421 authored over 7 years ago

cufflinks: update 2.2.1_2 bottle.

0b9a49acc988c0fea66c4ef9a64d5fb70dc7370b authored over 7 years ago

cufflinks: update 2.2.1_2 bottle for Linuxbrew.

046dfd8dc226339feeb394e12d0c1d45aa5af8b3 authored over 7 years ago

xcdf: update 3.00.02 bottle for Linuxbrew.

f00bf673a45b5fb3844401c6291472af244de2e0 authored over 7 years ago

xcdf: update 3.00.02 bottle.

1015d90c881db7cee362bba2126abce7cf1abf88 authored over 7 years ago

xcdf 3.00.02

Closes #6268.

Signed-off-by: Jonathan Chang <[email protected]>

c99eeef1c96800cb5894dd6d46678563f0298637 authored over 7 years ago

express: update 1.5.1_8 bottle for Linuxbrew.

2a6e794dfa9a9d653d67d24445576efd3c731ddd authored over 7 years ago

express: update 1.5.1_8 bottle.

defdca5bc9055b5821b3476cecba4806bade1551 authored over 7 years ago

express: revision for boost

Closes #6261.

Signed-off-by: Michka Popoff <[email protected]>

a982f1a97552ee93df8fe3d850db6f8ff954f4bf authored over 7 years ago

dgtal: update 0.9.3_1 bottle.

7f5449c1558cd1a91e876cf85ad49fa7506a262f authored over 7 years ago

dgtal: revision for boost

Closes #6260.

Signed-off-by: Michka Popoff <[email protected]>

a4941190ebe544c6d35d3de8320e86ebad6de680 authored over 7 years ago

CircleCI: Update brew [Linux] (#6269)

20ba57765df4b853ad8e0aff590c19b94867a2f4 authored over 7 years ago

bamtools: update 2.4.1_1 bottle for Linuxbrew.

a6b626b4ecd5993e7d8c6082ada70910edaab470 authored over 7 years ago

bamtools: update 2.4.1_1 bottle.

29b57be98d69caafeeea1c175985de7cd66df402 authored over 7 years ago

bamtools: revision for gcc5 (Linux)

Also fixes:
* C: 24: col 10: GitHub patches should use the full_index parameter:
https://...

b9adbb98d1912edf466ea88ca8bf5f7e47f00468 authored over 7 years ago

shark: update 3.1.4_1 bottle for Linuxbrew.

21a415d4e909bcd2570879a1e4c6eb71e04b5430 authored over 7 years ago

shark: update 3.1.4_1 bottle.

7227ad16a3a3c9ba1b770f6f4524eb48fc51fda5 authored over 7 years ago

shark: revision for boost

Closes #6262.

Signed-off-by: Michka Popoff <[email protected]>

b1302fa2101e21fe364906d21352dc359c674345 authored over 7 years ago

trinity: update 2.4.0_2 bottle for Linuxbrew.

cd68454206a5bbda198a231d39800ba006198c94 authored over 7 years ago

trinity: update 2.4.0_2 bottle.

8ad65a9414dc3c5b429e54b79bba9c5b79c9b2c8 authored over 7 years ago

trinity: revision for boost

Closes #6263.

Signed-off-by: Michka Popoff <[email protected]>

8c28c728721e50b11d44df4099102bb7d89c446d authored over 7 years ago

delly: update 0.7.7_2 bottle for Linuxbrew.

446bdae241da04fa358bb5d91f5a036abbd6edaf authored over 7 years ago

delly: update 0.7.7_2 bottle.

67a9b30574448a11aac4f615bc713cb9b4938c8f authored over 7 years ago

delly: revision for boost (Linux)

Closes #6259.

Signed-off-by: Michka Popoff <[email protected]>

56382785ed773886f1b250f13c6db30649dd4a89 authored over 7 years ago

libfolia: update 1.9 bottle.

3a23d1c84797ed9005559aa0f1303d32a53749bb authored over 7 years ago

libfolia 1.9

Closes #6253.

Signed-off-by: ilovezfs <[email protected]>

d624356a065582007738bf85dd3aa21e9d1c8e49 authored over 7 years ago

openmeeg: update 2.4-rc bottle for Linuxbrew.

ac42ae843d4c65cd146da3d57751119e4cc44181 authored over 7 years ago

openmeeg: update 2.4-rc bottle.

e189893ee1fadedf9d7dcb8f3c35b331fb031c81 authored over 7 years ago

openmeeg 2.4-rc

Closes #6266.

Signed-off-by: ilovezfs <[email protected]>

12c1da7ea36830375f3cd9b7b60d002b4be625cb authored over 7 years ago

opencollada: update 1.6.59 bottle for Linuxbrew.

40e36be76785b4cdab7a6638b69c616484da1956 authored over 7 years ago

opencollada: update 1.6.59 bottle.

18996dd4fbdc311c49b56358e6eff367dbf71dde authored over 7 years ago

opencollada 1.6.59

Closes #6265.

Signed-off-by: ilovezfs <[email protected]>

1d8cede70d940b30927544d8c443401d3eed5441 authored over 7 years ago

oce: update 0.18.2 bottle.

77b2d977b4f7c65d740df5b4262031516f0c90eb authored over 7 years ago

oce 0.18.2

Closes #6246.

Signed-off-by: ilovezfs <[email protected]>

fc3e4e5bf62b2578409ab3b38c7dcdf309bb1361 authored over 7 years ago

nanoflann: add 1.2.3 bottle for Linuxbrew.

573a400f3a6dc7633ebe49b18653ca208c6a6033 authored over 7 years ago

nanoflann: add 1.2.3 bottle.

9bb726a722f4acc476d0e469685ca1700df2215d authored over 7 years ago

nanoflann 1.2.3 (new formula)

Closes #6139.

Signed-off-by: Shaun Jackman <[email protected]>

975effe32cfb8d26f947ec09d1433114eec22454 authored over 7 years ago

butterflow: update 0.2.3_1 bottle.

6fb76bf0ccb91644d82f65f8ba945875d819738d authored over 7 years ago

butterflow: depend on opencv@2

opencv@2 is now built with ffmpeg by default

Closes #6193.

Signed-off-by: Michka Popoff <michk...

950ded9e048fd5b043e34af9390215472e4f80bf authored over 7 years ago

yices: update 2.5.3 bottle for Linuxbrew.

fee24ff7fc879069fd96e5fcf30c8540f1c26f9a authored over 7 years ago

yices: update 2.5.3 bottle.

35793fa52a2b7e5d1cb64b6c8490df6641602782 authored over 7 years ago

yices 2.5.3

Closes #6252.

Signed-off-by: ilovezfs <[email protected]>

d9ea4f41de50df995a50b319c1c7952705aeb537 authored over 7 years ago

phyml: add upstream issue link

df79d5da8faed2500c3237922f309e2dfcd4119f authored over 7 years ago

phyml: update 3.3.20170530 bottle for Linuxbrew.

bb1bb6f0a02ae261101a3e440391c8e8cad80521 authored over 7 years ago

phyml: update 3.3.20170530 bottle.

07795658ccce5c73c06ec23f04d56ec4bcff38fd authored over 7 years ago

phyml 3.3.20170530

Closes #6248.

Signed-off-by: ilovezfs <[email protected]>

f1be213c343cbdf4649d89349ff36f0a31571d3a authored over 7 years ago

sga: update 0.10.15 bottle.

e8adbca1d99015ab14f4965b66fe5077bc9540aa authored over 7 years ago

sga 0.10.15

Closes #6250.

Signed-off-by: ilovezfs <[email protected]>

284e56ac1adc60e5635cff41f30f2550a881d9ef authored over 7 years ago

prodigal: update 2.6.3 bottle for Linuxbrew.

f4b4c1a6069bb6ebe9c513bc4f0ef982b3073a39 authored over 7 years ago

prodigal: update 2.6.3 bottle.

52ac7f39c743bb4880e8b9ae5aeaabd4bff4c46d authored over 7 years ago

prodigal 2.6.3

Closes #6249.

Signed-off-by: ilovezfs <[email protected]>

1ac68c7f28e2a515fd7326b9211de5702c311800 authored over 7 years ago

xbyak: add 5.53 bottle for Linuxbrew.

66a8ccd810355fdbe1bd9715db25d130adc9418d authored over 7 years ago

xbyak: add 5.53 bottle.

7609866a4d41386dd426a50b8e8d71b695317ae7 authored over 7 years ago

xbyak 5.53

Closes #6251.

Signed-off-by: ilovezfs <[email protected]>

110efd881b73e8b382c129d0143fe55f51d72f4d authored over 7 years ago

madlib: update 1.12 bottle.

fdef240893c2373c4cd74fabbe4a7b42e03da674 authored over 7 years ago

madlib 1.12

Closes #6245.

Signed-off-by: ilovezfs <[email protected]>

0a33786c63ba551198fe428ec420475372505d3a authored over 7 years ago

lmod: update 7.6.11 bottle.

87b5237249b270588b6dc923d1c092f2a7083049 authored over 7 years ago

lmod 7.6.11

Closes #6244.

Signed-off-by: ilovezfs <[email protected]>

196d0ddaa0ab0feabcdd83d8e782ce3e3d200ade authored over 7 years ago

lammps: update 2017.08.11 bottle.

216f163ac70fbf06c460dfe06d68b77a891c153c authored over 7 years ago

lammps 2017.08.11

Closes #6243.

Signed-off-by: ilovezfs <[email protected]>

d176b57c5ecdc03a21bafb18b47378bc93cc22d8 authored over 7 years ago

transdecoder: update 5.0.0 bottle.

2a152bc66178f3672243f1e1c79ba5dc20b8f83c authored over 7 years ago

transdecoder 5.0.0

Closes #6234.

Signed-off-by: ilovezfs <[email protected]>

68f8e1787e4e8e476f7fbaac48f2368f16ed72ce authored over 7 years ago

cutadapt: update 1.14 bottle for Linuxbrew.

afdcedc3cbb69877721a1097c57c64881d8636f1 authored over 7 years ago

cutadapt: update 1.14 bottle.

cc7ddc419cd89f7e0d04c1cf12cb053e1c1687e4 authored over 7 years ago