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github.com/sagemath/sage

Main repository of SageMath
https://github.com/sagemath/sage

Merge branch 'develop' into graphs/improve_min_spanning_tree

38969d2303d3725063a9f1e21182cd57ceae7e2b authored over 1 year ago by David Coudert <[email protected]>
Fix a doctest

a5dd948b7488ae6c68735c894230ee3b90a8622f authored over 1 year ago by Kwankyu Lee <[email protected]>
%display latex is the default

225446ffdd4ce03bd8bca1d4f0a28725998ff41e authored over 1 year ago by Kwankyu Lee <[email protected]>
Fix doctests

1ec45d6f62fdb5821e9a595a93501c480e16d43b authored over 1 year ago by Kwankyu Lee <[email protected]>
Minor css tweak

49dfc5633cc84f5e999f88d8cd34b2f5f5e80dbc authored over 1 year ago by Kwankyu Lee <[email protected]>
Allow custom binder repo

da82502bb76e87f0869a97884f5ec35fac21a9d6 authored over 1 year ago by Kwankyu Lee <[email protected]>
Use the official thing

7102fe05e3744148b896904268f4b52d2bccd274 authored over 1 year ago by Kwankyu Lee <[email protected]>
Use unofficial binder repo temporarily

612d396e7b898a3d2b2b3ea1ea9bf153088b506f authored over 1 year ago by Kwankyu Lee <[email protected]>
Add more comments to renamed jupyter-sphinx-furo.js

fafce5c10c54e7eee9548afda307715ccca8b86e authored over 1 year ago by Kwankyu Lee <[email protected]>
Adjust css styles of thebe elements

fd494e7aaaccfa2bbeff409c6b1bb831cb8ba25b authored over 1 year ago by Kwankyu Lee <[email protected]>
Adjust button styles

5f8fb1ae88d09ed56168fa91df301e0ab8bc88f5 authored over 1 year ago by Kwankyu Lee <[email protected]>
More edits on a-tour-of-Sage

5f4dcb1ba1d9c9f75220217ce565bde1cbb02410 authored over 1 year ago by Kwankyu Lee <[email protected]>
Fine fixes

27977dc8c7319cac43d0ed6e4f8c1b61f9580bac authored over 1 year ago by Kwankyu Lee <[email protected]>
Activate live doc in github doc previews

910e866c15da1a1edd91eb20f76b044127240285 authored over 1 year ago by Kwankyu Lee <[email protected]>
Minimize the patch on jupyter-sphinx

b5ff41a555958d67f7fdf3d57446dff4385c2a36 authored over 1 year ago by Kwankyu Lee <[email protected]>
Minor edits to the front of sage doc

482d51fbf8e7d4e40137696c93ba1c5ff5750922 authored over 1 year ago by Kwankyu Lee <[email protected]>
Fix the patch to jupyter-sphinx

12afe87d2e54e2636856df54b3c8c74676339eec authored over 1 year ago by Kwankyu Lee <[email protected]>
Style activate button

19c1c09791e499b3d3be8501276ebdf45c376fcc authored over 1 year ago by Kwankyu Lee <[email protected]>
Fix a typo

6ae42f5f435b4080bbe0aab3563ee204db3565ca authored over 1 year ago by Kwankyu Lee <[email protected]>
Fix activate button

62928dbaa2214c1ed11a2e71bb77523c500a8f84 authored over 1 year ago by Kwankyu Lee <[email protected]>
Rework sage live doc

8121580ca9b700b8d496cd2079c463b302e6fb96 authored over 1 year ago by Kwankyu Lee <[email protected]>
Showcase live doc on a-tour-of-sage

fc84c30837c58b3123b3ab9b34143acd908eebd5 authored over 1 year ago by Kwankyu Lee <[email protected]>
Support furo dark mode

8bb20a66573c438152f40d0db850d5a0c6dd144a authored over 1 year ago by Kwankyu Lee <[email protected]>
:arrow_up: Bump actions/checkout from 3 to 4

Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4.
- [Release notes](htt...

4fa6783ac575dd5189ed151a3a3a01b7b8988de8 authored over 1 year ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
:arrow_up: Bump myrotvorets/set-commit-status-action from 1.1.7 to 2.0.0

Bumps [myrotvorets/set-commit-status-action](https://github.com/myrotvorets/set-commit-status-ac...

beeb3d5fd3226455f9b54e031a6be85e6dcdf097 authored over 1 year ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
bootstrap: Use 'ENABLE_SYSTEM_SITE_PACKAGES=yes sage-get-system-packages install-requires'

12f6ef88f3567ff07c96ac904f9bfe8807485da4 authored over 1 year ago by Matthias Koeppe <[email protected]>
build/pkgs/typing_extensions: add standard python spkg-configure.m4

461019388858417b0b04581115902a29f57ea1e9 authored over 1 year ago by Michael Orlitzky <[email protected]>
build/pkgs/gmpy2: add standard python spkg-configure.m4

5ef2c03d888e9bba307620f738caeb7c5cb40a73 authored over 1 year ago by Michael Orlitzky <[email protected]>
Merge branch 'use-cython-3' into numpy_1_26

def1e4c1ded582668f0969324d6e80c31bdfddbd authored over 1 year ago by Matthias Koeppe <[email protected]>
Merge remote-tracking branch 'upstream/develop' into use-cython-3

82a758066fec0db11e5f86a693c170700a5b50b6 authored over 1 year ago by Matthias Koeppe <[email protected]>
Merge remote-tracking branch 'upstream/develop' into needs_for_sage_groups

836c848216e86963acb8b6b511d1ec95716c6077 authored over 1 year ago by Matthias Koeppe <[email protected]>
Merge remote-tracking branch 'upstream/develop' into tox_4

e850f788611427ed860fd384c6037c224e0b15e9 authored over 1 year ago by Matthias Koeppe <[email protected]>
build/pkgs/nbconvert/dependencies: add tinycss2

While investigating whether or not tinycss2 is obsolete, it was
discovered that nbconvert (still...

15e68e42d4131271cc6b7c4c6a5518d939474625 authored over 1 year ago by Michael Orlitzky <[email protected]>
build/pkgs/html5lib: drop obsolete package

This was originally a dependency of bleach, but bleach doesn't need it
any more.

b0236860222b26a5491f5f5984bde32fcc6921d2 authored over 1 year ago by Michael Orlitzky <[email protected]>
src/setup.cfg.m4: drop jinja2 from install_requires

The Sage library does not itself require jinja2; only sage_setup does.

6f9fd72fce1b5023f2fa1c54e22aa461de6d95f0 authored over 1 year ago by Michael Orlitzky <[email protected]>
build/pkgs/sagelib/dependencies: drop jinja2

The Sage library needs jinja2 only at build time and only via
sage_setup, which is already one o...

7c68fe3aa0c3ba58a7d99dd74a8569576a3981cc authored over 1 year ago by Michael Orlitzky <[email protected]>
build/pkgs/ipython/dependencies: drop jinja2

IPython itself no longer depends on jinja2 after nbconvert was
factored out of it.

20da75bec24806b5dbd176bfccc0a695fe882277 authored over 1 year ago by Michael Orlitzky <[email protected]>
Updated SageMath version to 10.2.beta2

41031292ff1ae518cd5b5a29ce277aa1ff8ced9e authored over 1 year ago by Release Manager <[email protected]>
Revert "Revert "build/pkgs/cython/dependencies: Add pythran as an order-only dep""

This reverts commit d97caa613c751be4498eede257df2be0db1bef9c.

fcc71993653ce62c705b9fd5fc3d793d3ae64163 authored over 1 year ago by Matthias Koeppe <[email protected]>
build/pkgs/pythran/dependencies: Remove numpy

d92ae7ccc6622fa7742671d6713dcf0e997dda5d authored over 1 year ago by Matthias Koeppe <[email protected]>
build/pkgs/patchelf/distros: add remaining

All sourced from,

https://repology.org/project/patchelf/versions

e4749c0b24b9e4e17820b8b80fe40db42a3116d6 authored over 1 year ago by Michael Orlitzky <[email protected]>
build/pkgs/pythran: Update to 0.14.0

587b220d2383c61f0633bd8ddcf958d8017e853d authored over 1 year ago by Matthias Koeppe <[email protected]>
Revert "build/pkgs/cython/dependencies: Add pythran as an order-only dep"

This reverts commit 84ad1a944b36173f050b6a3dd46c84269c31ed82.

d97caa613c751be4498eede257df2be0db1bef9c authored over 1 year ago by Matthias Koeppe <[email protected]>
sage.doctest.sources: Distinguish .pxd from .pyx in doctest basenames

106a5a39bd161fa146dfecc5005363538587c08d authored over 1 year ago by Matthias Koeppe <[email protected]>
support for ecl 23.9.9

26f1b724b0ee27f0af482b6058a68281bd6771b3 authored over 1 year ago by Gonzalo Tornaría <[email protected]>
build/pkgs/patchelf: add spkg-configure.m4

If "patchelf" is in the user's $PATH, we can use it.

27100436661dcf5068fda8391896d8f7dc59855a authored over 1 year ago by Michael Orlitzky <[email protected]>
build/pkgs/patchelf: add Gentoo package information

0eec13deb03de81b262198c22d4b03e024e99ac1 authored over 1 year ago by Michael Orlitzky <[email protected]>
gh-36208: configure.ac: disable tzlocal with --disable-r

The tzlocal package is a dependency of rpy2 and is used nowhere else in
sage. When the user disa...

f9609a075a93ad4c6d270f129c6c33f4945e4bdc authored over 1 year ago by Release Manager <[email protected]>
Fixed broken test case

Test for __hash__ should succeed now

90123970ab2fa3de72735e2cbf342e33c4da66bb authored over 1 year ago by 65537 <[email protected]>
gh-36207: Remove self-`cimport`s


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7bd147dd2ea4b7a7490fc4c4cb7e04e124bf9c9a authored over 1 year ago by Release Manager <[email protected]>
gh-36202: some micro-details in Dyck words and Parking functions


This is

- widening the input type of ParkingFunction to allow for tuples and
list-like obje...

328988d6917c9a4cd2ac84d2821d539579b6bed2 authored over 1 year ago by Release Manager <[email protected]>
gh-36200: Fixing the iterator of SemistandardMultiSkewTableaux


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344155852608de5bdc6107f2de36a318ab57d7a3 authored over 1 year ago by Release Manager <[email protected]>
gh-36195: schemes/elliptic_curves: disable a test that takes too long


A doctest introduced in #35626 takes ~50s on current hardware (for
comparision, doctesting t...

307712daae9821fefe6b8ad07edc8b8b6e4c5fbd authored over 1 year ago by Release Manager <[email protected]>
gh-36192: fix E228 then E225 in rings/


fix pycodestyle warnings E228 and E225 in rings

done using autopep8

### :memo: Checklist

...

15a05662985546daa7a82b9fcea43c6ac3601665 authored over 1 year ago by Release Manager <[email protected]>
gh-36191: fix E228 and E225 in schemes/


fix pycodestyle warnings E228 and E225 in schemes

this was done using `autopep8`

### :memo...

66aacc5b202d1063bde0093bee37e0691e2a4e0a authored over 1 year ago by Release Manager <[email protected]>
gh-36187: use semi-primitive root when checking kernel polynomials of isogenies


The existing code takes a generating set of the unit group, but as a
comment in the code sug...

7b8b6b627621edda7d36f7cb0ba3457a2576181b authored over 1 year ago by Release Manager <[email protected]>
gh-36185: src/sage/tests: fix another "Computational Math..." doctest


One doctest for the Computational Math book fails for me,

```
Failed example:
limit(f...

50b1d02a177718e73a4ccc27159425482424abbc authored over 1 year ago by Release Manager <[email protected]>
gh-36183: `sage.misc.sageinspect`: fix doctest warnings due to modularisation


We fix the following doctest warnings:
```
sage -t --long --warn-long 30.7 --random-
seed=26...

e7d2570d77bde5dc717513e107bc2966ce410af0 authored over 1 year ago by Release Manager <[email protected]>
gh-36182: fix E228 and E225 in algebras/


mostly about space before and after modulo

### :memo: Checklist

- [x] The title is concise...

7b5ac02cf8c7fe619edf8f962fdaf7cc74686ef2 authored over 1 year ago by Release Manager <[email protected]>
gh-36180: more fixes in quadratic forms


This is fixing a few code and doc details in two files inside quadratic
forms.

### :memo: C...

81e596e456ad24f5e10bf95afa4c23af089e37ef authored over 1 year ago by Release Manager <[email protected]>
gh-36179: Improve methods in `sage.misc.rest_index_of_methods` to fix the documentation of graphs.


Fixes #36178.

We ensure that method
`sage.misc.rest_index_of_methods.gen_thematic_rest_tabl...

8674d9f50b37cc0486e8691a28995a28c16ba2b0 authored over 1 year ago by Release Manager <[email protected]>
gh-36177: fix and activate pycodestyle E305 in py files


fix and activate

- pycodestyle E305 in py files
- pycodestyle E502 in pyx file (one fix on...

8137704f3112eed308093370aa859db90af354fe authored over 1 year ago by Release Manager <[email protected]>
gh-36173: Fix quadratic memory of berlekamp_massey


Fix #36172.

Reduced berlekamp_massey memory consumption by replacing a dictionary
with temp...

f63a4d5b0db2c54d4e79f450bf38884478110bff authored over 1 year ago by Release Manager <[email protected]>
gh-36170: Fix the ascii art for the Heisenberg Lie algebras


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1ebaec7841175dda9c9cc44d6274fa7ef8bd4d20 authored over 1 year ago by Release Manager <[email protected]>
gh-36162: minor details in graph_plot


just fixing a few little things in the modified file

### :memo: Checklist

- [x] The title ...

d11cb0ba5f70096a2d029b2ce5de4ca9536aaa77 authored over 1 year ago by Release Manager <[email protected]>
gh-36152: `sage.rings`: Update `# needs`


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b6d1322598feb546825b55781e45271d08b4018b authored over 1 year ago by Release Manager <[email protected]>
gh-36151: Coxeter arrangement


adding the Coxeter arrangement to the catalog

### :memo: Checklist

- [x] The title is conc...

296643c6fef6baed4eeb506c716bc5437e6b4731 authored over 1 year ago by Release Manager <[email protected]>
gh-36141: Use system python packages with --enable-system-site-packages


Rebased branch of https://github.com/sagemath/sage/issues/29665

Platform-specific testing:
...

7bb1e6ba961e8f6c55fb7521fb5548f048ae4cfc authored over 1 year ago by Release Manager <[email protected]>
gh-36112: Upgrades: scipy 1.11 and dependencies


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7ed5b8b2fa688fac371d0b0af53bf0489f9c6c07 authored over 1 year ago by Release Manager <[email protected]>
gh-36111: using PyLong API instead of legacy PyInt API


Fixes #36081

### :memo: Checklist

- [x] The title is concise, informative, and self-explan...

88ad3a1a7b1906ce2633fc0605e4f25442608bd8 authored over 1 year ago by Release Manager <[email protected]>
gh-36102: `sage.schemes`: Update `# needs`


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aa1cfd7fcbbfd086eac7402553cc4f9675051ab6 authored over 1 year ago by Release Manager <[email protected]>
gh-36021: Improve method is_planar


Fixes #35152.

We improve the method to avoid working with embeddings when the input
(di)gra...

754e88a7e888a9450c4b70b7116dc8e70726b00e authored over 1 year ago by Release Manager <[email protected]>
gh-36006: Fix tests with gmp 6.3


With gmp 6.3, overflow errors are raised as `FloatingPointError`

URL: https://github.co...

5e841de46c3baa99cd1145b36ff9163e9340a55c authored over 1 year ago by Release Manager <[email protected]>
gh-35985: More improvements for braid groups involving permutations, and a 2-generator presentation


<!-- Describe your changes here in detail -->
This PR is a continuation of #35214.
- Given a...

ad402a32407fb3d784447e1a287b0cb0cd46d787 authored over 1 year ago by Release Manager <[email protected]>
gh-35939: Support for exponential and gamma distribution


I think that the exponential and gamma distributions are essential.
Instead of filing an iss...

3e46882052cbae7c1e63ab8b75463bc59a2d3941 authored over 1 year ago by Release Manager <[email protected]>
gh-35907: Deprecate rename_vertices parameter in disjoint_union


### :books: Description

The `rename_vertices` parameter is not mentioned anywhere within th...

5a64b7c4fbd83062103ee70903c389562878b995 authored over 1 year ago by Release Manager <[email protected]>
gh-35380: GH Actions: Run incremental portability tests on "c: packages: standard" PRs


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54481a5d9594e94c715c979f026d8e219edc33bb authored over 1 year ago by Release Manager <[email protected]>
fix method fundamental_group in sage/topology/simplicial_complex.py

f647f671d0bc92b3f2c093cfd8333b8036babc75 authored over 1 year ago by dcoudert <[email protected]>
fix method lift_cross_ratios in sage/matroids/utilities.py

36ac7e4751f9b0f89c86d50f9ca2d9cf738590be authored over 1 year ago by dcoudert <[email protected]>
make min_spanning_tree robust to incomparable vertices

2fdb5e5b0a7677ba4d7efda337fa9a952e739030 authored over 1 year ago by dcoudert <[email protected]>
fix typo in documentation

5e129e34dd22b34837179a7e057db0c5f888fba5 authored over 1 year ago by Xavier Caruso <[email protected]>
Fixing the definition and updating a doctest.

68d6c11a1633e560521b2e4b21b15d03c69d3252 authored over 1 year ago by Travis Scrimshaw <[email protected]>
Adding a test for the improved uninitialized series.

72e15b65cdc24b1fdf54ef7caad1304c14897806 authored over 1 year ago by Travis Scrimshaw <[email protected]>
Better uninitialized checking; fixing doctests.

cfd2dfe2cdb6cbe97e28937d2ca2d215b31d4f3e authored over 1 year ago by Travis Scrimshaw <[email protected]>
Better order handling within infinite operator streams.

2afd7f37aae6e164bbd3f25bfa64ee8b5054c1f1 authored over 1 year ago by Travis Scrimshaw <[email protected]>
Fixed grammatical errors at multiple points in English documentation

d279adfa108aaf1905a5eae976248514e5d18b6d authored over 1 year ago by MedantSharan <[email protected]>
some care for graphs in sage/combinat/posets/mobile.py

d702234360a68eab255f16e07f651b54f597c8bd authored over 1 year ago by dcoudert <[email protected]>
some care for graphs in sage/combinat/posets/lattices.py

c2f4f7bff9dfa6f16392015d40122ed4b4525785 authored over 1 year ago by dcoudert <[email protected]>
some care for graphs in sage/combinat/posets/d_complete.py

cae3aaca284b8683200e26617e1c3355ad5b4aee authored over 1 year ago by dcoudert <[email protected]>
some care for graphs in sage/combinat/posets/hasse_diagram.py

d3b2e16432403bd004cb9e75edf04efedc62b9f7 authored over 1 year ago by dcoudert <[email protected]>
improve the use of graphs in sage/combinat/posets/posets.py

4e20e9308f424cef88e61c52108924509c8f30f4 authored over 1 year ago by dcoudert <[email protected]>
Fix line formatting

7b954a4edf11bd9908585d0844984b75e68a1ed7 authored over 1 year ago by OP5642 <[email protected]>
PR #36021: small tweak

933707f83286d078cdf2dc517339d7e73d11f688 authored over 1 year ago by dcoudert <[email protected]>
Adding cycle types for signed permutations.

9089a1c44753c5178001bda1670e88c57ebdadf8 authored over 1 year ago by Travis Scrimshaw <[email protected]>
Fixing bug with element_in_conjugacy_classes() error message.

2dd23322330b8a1234fa2927c3d75eeb71c863ea authored over 1 year ago by Travis Scrimshaw <[email protected]>
Fix the to_cycles() of signed permutations.

fb82b76563764f1e31256bdf90b648226d0abefe authored over 1 year ago by Travis Scrimshaw <[email protected]>
Moving Stream_dirichlet_invert to the unary section.

9db4d0f4a86a195e66d207d4742825a53bf9eb80 authored over 1 year ago by Travis Scrimshaw <[email protected]>
More Stream_unary inheritance, some missing details, and other polishing.

6789a2cd29a69a29c40e9b85e270ebfef7610647 authored over 1 year ago by Travis Scrimshaw <[email protected]>
src/sage/doctest/control.py: double the default test timeout

When running the test suite on an older machine, many files time
out. For example,

$ sage -t ...

07379442e8a27ec4416995312816d89b19075a0a authored over 1 year ago by Michael Orlitzky <[email protected]>
get rid of xrange again

33b3ea0dae90f1e41ca1496ba6e6cdcac27d715a authored over 1 year ago by Frédéric Chapoton <[email protected]>