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github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices


https://github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices

accessibility fixes.

Add label to search box and navigation arrows.

94ef967bda2607c05d1d83da3324c3cbd364070d authored over 8 years ago by evanwill <[email protected]>
Adding checks for things that commonly go wrong during template conversion.

1. Checking that `index.md` has `root` set to '.'
2. Checking that `_config.yml` has `root` set ...

f0a947584aefeb1425e3f2952b1ef6bbe20b645e authored over 8 years ago by Greg Wilson <[email protected]>
Removing trailing space in Ruby file

68c149376d66d135a98c41e382800f051aee50b3 authored over 8 years ago by Greg Wilson <[email protected]>
Displaying break information in a box

a366bcc32fd4be263e917e6a2d4b1bdce0515010 authored over 8 years ago by Greg Wilson <[email protected]>
Adding ID attribute to schedule

7da36a56c0eed118bf6a74d9786d443c8faa769d authored over 8 years ago by Greg Wilson <[email protected]>
Changing name of instructor's guide to 'instructor notes'

00a16f7fee6fa5ee65c5bb2b8dce48ed91cd1f0b authored over 8 years ago by Greg Wilson <[email protected]>
Adding footnote about syllabus

e12c3a4852c12b6a7ba1b437e95256e3ce15a159 authored over 8 years ago by Greg Wilson <[email protected]>
Navigation links in footer

cf155463b4a665b31b11851f705e30a9588a23a6 authored over 8 years ago by Greg Wilson <[email protected]>
Switch to relative: setup default root and specific root for index.md

a688650d9bfaa242173089be5d4877bdec67bed4 authored over 8 years ago by Rémi Emonet <[email protected]>
Switch to relative: in episode_title, use page.root + rewrite

62b5dbc25625c264c151d7c152c89eadeef6956c authored over 8 years ago by Rémi Emonet <[email protected]>
Switch to relative: use page.root in most templates

791dcc3e6a81abc138b617a5d39e782c02ba85ca authored over 8 years ago by Rémi Emonet <[email protected]>
Merge pull request #92 from swcarpentry/twitwi-patch-1

Fix "br" typo causing ugly rendering (epub only)

4f08a69259d82b528bc82183aaaa2f41a2832414 authored over 8 years ago by Greg Wilson <[email protected]>
Fix "br" typo causing ugly rendering (epub only)

</br> instead of <br/> renders fine in the browser but not in an epub

fb06bdbeae3cfaf4a3a2610dd281133b21461bee authored over 8 years ago by Rémi Emonet <[email protected]>
To help with debugging

cf5d4174a76f32b164133a5158a47de18279b2be authored over 8 years ago by Greg Wilson <[email protected]>
Adding a few more URLs

0607fcffbb59c28a92363b704156bb6cae2c36dd authored over 8 years ago by Greg Wilson <[email protected]>
Updating the lesson initializer's CONTRIBUTING.md

ec164572d010ca2366307e2712c38b8a510e50c3 authored over 8 years ago by Greg Wilson <[email protected]>
Checking that internally-defined links resolve.

An internally-defined Markdown link has the form [xxx][yyy]. If the
ID 'yyy' doesn't resolve, t...

cebd8558273a274f84b3b129c627f42a2ed09ef1 authored over 8 years ago by Greg Wilson <[email protected]>
Checking future print

9be4b22988fafd16c05037f6574986725984d533 authored over 8 years ago by Greg Wilson <[email protected]>
Moving from __future__ to start of file

aa316f855d3812b3105f86495eba89dcf58e587c authored over 8 years ago by Greg Wilson <[email protected]>
Merge pull request #85 from gdevenyi/gh-pages

Import future print in case of python2 environment

5f116cdd16e6802a054c30754cc8ddcd5b5bda48 authored over 8 years ago by Greg Wilson <[email protected]>
Import future print in case of python2 environment

f3b921a58cb66fe5f851c1ecce1a566919ea1ce8 authored over 8 years ago by Gabriel A. Devenyi <[email protected]>
Merge pull request #83 from fmichonneau/check-r-packages

[fix # 82] Check R packages required by the lesson

d02d8a7791fa022d2f191443755455b5379a452f authored over 8 years ago by Greg Wilson <[email protected]>
Loading standard images via HTTPS

c1fe9d81a55fb34f17fdfc92ff2bbab882f3d375 authored over 8 years ago by Greg Wilson <[email protected]>
Forcing CSS and Javascript to be loaded via HTTPS.

Using `site.github.url` to refer to the repository fails to load resources when the GitHub Pages...

a19a62597f86213549865870a0f8e043c8aac9df authored over 8 years ago by Greg Wilson <[email protected]>
simplify code checking for knitr

45729b52f9f234e3a28d020428c52203ede6202b authored over 8 years ago by Francois Michonneau <[email protected]>
check packages required and install them if needed

9341f9b9d11dca9d093b4a4d78c064701f03af5f authored over 8 years ago by Francois Michonneau <[email protected]>
Ignoring a few more things

148bfcc9c0c6a64dfe7290e5c5333e3af0fb3ec6 authored over 8 years ago by Greg Wilson <[email protected]>
Cleaning up sorting of error messages.

Closes #75.

14cce035677d3e7a2d4337ec33102c13ff8902d1 authored over 8 years ago by Greg Wilson <[email protected]>
Always checking upstream

aee474a52028e2fb05b048cb1dc6d58d6febfecc authored over 8 years ago by Greg Wilson <[email protected]>
Using 00:00 as a start time

a4ec693ae12375ca2f950145df00b58ffa454d8a authored over 8 years ago by Greg Wilson <[email protected]>
Cleaning up prev/next logic

9de64a06625eca27a406440da3087d7f9cbd14b9 authored over 8 years ago by Greg Wilson <[email protected]>
Synchronizing lesson checker with late changes

a56ac2da1d6b7eb472212ae9c1d2c7057acf0f95 authored over 8 years ago by Greg Wilson <[email protected]>
Lesson initializer

2d3d5dd7abdd3fb10c20034e07a6de2deb416ad3 authored over 8 years ago by Greg Wilson <[email protected]>
Switching to GitHub-defined variables

8748a80b4c07fe7932d3abbcc40eacf65bf8bc29 authored over 8 years ago by Greg Wilson <[email protected]>
Making the code a little more robust

cf51440b64692065eb81408c03695c0645096796 authored over 8 years ago by Greg Wilson <[email protected]>
Adding support for MATLAB

466c28db72cc96030e586a963501e950aaeb3537 authored over 8 years ago by Greg Wilson <[email protected]>
Handling anchors by ignoring them

5520175060add65af31ac11a5d13a90c3b3f0d07 authored over 8 years ago by Greg Wilson <[email protected]>
Tighter checks for figures

9d6512cee44931fb94ce2025ab61ee158e92024a authored over 8 years ago by Greg Wilson <[email protected]>
Checking for links to figures

e577ea88692b33e86d5d7eebdefa3af00efa6c03 authored over 8 years ago by Greg Wilson <[email protected]>
Starting on tool to check repository settings.

1. Created `bin/repo_check.py`.
2. Moved `require()` to `util.py`.
3. Updated `Makefile` with...

9a5ab181b0ee63b72319678370de7b77c6dd895d authored over 8 years ago by Greg Wilson <[email protected]>
Checking more configuration values

9610f407af3b47da490d8abbed46c6d9fc4f63af authored over 8 years ago by Greg Wilson <[email protected]>
Must provide permalinks in pages, not layouts

503cdddb563604d04b3b1a2c9f23f30bed6e3dc5 authored over 8 years ago by Greg Wilson <[email protected]>
Checking for .nojekyll file

68bf4bb0671f86ac93a100f0bdff168f9ef664f1 authored over 8 years ago by Greg Wilson <[email protected]>
Images cannot be wider than the page

2b419e33634a634c26f995777fd5991112a424db authored over 8 years ago by Greg Wilson <[email protected]>
Merge branch '2016-06' of github.com:swcarpentry/styles into 2016-06

570451a88f4071708bd73e83f0f6f42bdc6a5dfc authored over 8 years ago by Greg Wilson <[email protected]>
Looking for missing or superfluous images

030ac5c0854807db9325810cdc2caa7fc933ab24 authored over 8 years ago by Greg Wilson <[email protected]>
Merge pull request #73 from fmichonneau/knitr_fig_path

add function knitr_fig_path

06c8f2607b0218917877dcb1c618f05b3c1566dd authored over 8 years ago by Greg Wilson <[email protected]>
Lesson checking parameter handling

fb17830636a349a73491a28b21624bf2c74a10f1 authored over 8 years ago by Greg Wilson <[email protected]>
add function knitr_fig_path

634e055b258edd492180fbcfd15664a3f4b7263e authored over 8 years ago by Francois Michonneau <[email protected]>
Checking ends of lines

c2f89a7a8d78a71070e91ac3a2b6e5a99095e8b3 authored over 8 years ago by Greg Wilson <[email protected]>
Merge branch 'move-data' of https://github.com/fmichonneau/styles into fmichonneau-move-data

acb49f78a3c69a1bcb0c50e926e6a507a1ec1c3d authored over 8 years ago by Greg Wilson <[email protected]>
re-add ./data folder

ea8797f21483b4ee3d8f6e49cda278193a506821 authored over 8 years ago by Francois Michonneau <[email protected]>
simplify to single _episodes_rmd/data folder

993bac708dfb9d677bf5245d48b09742fa46d5a3 authored over 8 years ago by Francois Michonneau <[email protected]>
Merge branch 'styling-workshops' into 2016-06

8237ab5050741bd87040e03b2dc3f30c1aec580b authored over 8 years ago by Greg Wilson <[email protected]>
Merge branch 'markdownify' into 2016-06

4a0ac26f0e442254c8d42100fc0d2f818408f9ff authored over 8 years ago by Greg Wilson <[email protected]>
Merge branch 'converting-to-reporter' into 2016-06

ae6d6f6790fa8b957cd1e0b65a831d999f8add78 authored over 8 years ago by Greg Wilson <[email protected]>
Merge branch '2016-06' of github.com:swcarpentry/styles into 2016-06

40dbc703e9fcc162aca3244c92a552acc4805db4 authored over 8 years ago by Greg Wilson <[email protected]>
Updating contribution guidelines in boilerplate

079d7d50e9e2235aa0c99fc687ef30135dcfad53 authored over 8 years ago by Greg Wilson <[email protected]>
Merge pull request #67 from gvwilson/clean-rmd

Only cleaning intermediate R files on demand.

4c788a5b2f0f1ed76c40c3e017cccbb0a85cdd08 authored over 8 years ago by Francois Michonneau <[email protected]>
Making pages work for workshops as well as lessons

de59b96f5dd9d7ded6cff97ce4a11146626c884d authored over 8 years ago by Greg Wilson <[email protected]>
Styling workshops correctly.

1. Use site.root for root path if set, otherwise use site.github.url.
2. Display extra files f...

e0f4c7a8e180a63dcb3ee60e755ff3beaeccd461 authored over 8 years ago by Greg Wilson <[email protected]>
Markdownifying questions, keypoints, etc.

c3a1639641dd07b16884daa26d00b49eccb93c84 authored over 8 years ago by Greg Wilson <[email protected]>
Adding error handling for YAML import.

1. Moving all YAML library usage into 'util.py' via utility function.
2. Wrapping 'import yaml...

046dfbd4426dae68799194a428cdacf417d5ea3d authored over 8 years ago by Greg Wilson <[email protected]>
Checking CONTRIBUTING.md (without YAML)

805c05eb797c673763571dca37044c219697e318 authored over 8 years ago by Greg Wilson <[email protected]>
Converting workshop checker to use Reporter class.

1. Converting error reporting.
2. Simplifying checking logic.
3. Refactoring metadata loading...

ac67ebc4a0303b28baf941ccf7cd465a8fecf970 authored over 8 years ago by Greg Wilson <[email protected]>
Checking for non-Markdown files.

Closes #55.

519cd35bd95dbebc8e54b0279cd928a3c310804d authored over 8 years ago by Greg Wilson <[email protected]>
Only cleaning intermediate R files on demand.

1. Splitting commands to clean intermediate R files into separate target. These files must be ...

5217736aeb4b2e9f76a8cecf4d127a094a901281 authored over 8 years ago by Greg Wilson <[email protected]>
move data/ into _episodes/ and _episodes_rmd/

`generate_md_episodes()` is modified such that datasets storred into
_episodes_rmd/data/ needed ...

41a7763598956d7b03a3cbb659d37ea488576b3f authored over 8 years ago by Francois Michonneau <[email protected]>
Merge pull request #64 from gvwilson/building-r

Only try building R files if there are some

c56521846387055aab9436bb26d349bb738114b9 authored over 8 years ago by Greg Wilson <[email protected]>
Changing text of auto-generated file

05c8b44a7d3d492511319c704269dd4a82426b73 authored over 8 years ago by Greg Wilson <[email protected]>
Merge branch '2016-06' into building-r

2e8a6b0c98b2e93521984c6ad1fe12d00dbc27b6 authored over 8 years ago by Greg Wilson <[email protected]>
Updating _config_dev.yml to match changes to root and repo vars

7c21775ecf42d7f2121ef174d605f5d39c472146 authored over 8 years ago by Greg Wilson <[email protected]>
Switching to site.root and site.repo

1dcf9fc21ecb1ae1ca234871b075f0be78d1d323 authored over 8 years ago by Greg Wilson <[email protected]>
Only try building R files if there are some

08d224ae517097404eba6ce981e8f16e9593eedf authored over 8 years ago by Greg Wilson <[email protected]>
Better display of file groups in Makefile

86676036304da64ece2da1a880cedecf07558426 authored over 8 years ago by Greg Wilson <[email protected]>
Merge pull request #62 from fmichonneau/fix-knitr-env

use anonymous function to generate markdown files

02b4ec14c35b6a3c3ddbb31fd3865157f3519dd6 authored over 8 years ago by Francois Michonneau <[email protected]>
use anonymous function to generate markdown files

4e8365b00c3e3ff39dacb895c64af6e8f883f619 authored over 8 years ago by Francois Michonneau <[email protected]>
Checking metadata fields more carefully

0c9c1533a0956617f7c14b8adced2057d70169bc authored over 8 years ago by Greg Wilson <[email protected]>
Printing error messages in sorted order

fc98097b0eb67b895f57c41208f82499cbcdb8fa authored over 8 years ago by Greg Wilson <[email protected]>
Checking that episodes are numbered consecutively

3c28d16e4ca4a5fde52e46120d3ea408f8e57e08 authored over 8 years ago by Greg Wilson <[email protected]>
Making line-length checking optional for lessons.

1. Modify `read_markdown` to return list of (index, line, line_length).
2. Modify `lesson_chec...

2a53ed7304d813edeab9a1cbbdf226413a5d6f53 authored over 8 years ago by Greg Wilson <[email protected]>
Raising exception instead of printing error on bad YAML

a733e2a3f6d2f3b9607b6c695ef73d3442af2f38 authored over 8 years ago by Greg Wilson <[email protected]>
Merge pull request #61 from fmichonneau/fix-rmd-formatting

Fix Rmd formatting

10443956d680e5c0236a2f95aa85657ee8bcf25e authored over 8 years ago by Greg Wilson <[email protected]>
remove extra line return in knitr output

ff37db08a1a0a1d913e763b93bcb15bc8bde2687 authored over 8 years ago by Francois Michonneau <[email protected]>
use .r instead of .source for code chunks

9bfebc4d0fc6f75598083734b995eb484fffa512 authored over 8 years ago by Francois Michonneau <[email protected]>
Directory for R Markdown files

ea2a2eec3a429d0126589fcf0ded4245f2762aab authored over 8 years ago by Greg Wilson <[email protected]>
Removing legacy PHONY target lesson-single

32f32d338002c882365851c77ffb066f1081f853 authored over 8 years ago by Greg Wilson <[email protected]>
Merge pull request #56 from fmichonneau/rmarkdown-tools

add tools to deal with episodes written in Rmd

3de94867133c1436c6d6dc9ea9565354d5bc2c53 authored over 8 years ago by Greg Wilson <[email protected]>
add tools to deal with episodes written in Rmd

19beaaf0c2de344412c9e0410a592013cd1369fe authored over 8 years ago by Francois Michonneau <[email protected]>
Making nav bar responsive

11b78e9c2ec95d5c3419b2c7690d6efe586a5762 authored over 8 years ago by Greg Wilson <[email protected]>
Tidying up based on first contact with R maintainers.

1. Renaming Ruby file to use underscore in name (consistent with other `bin` scripts).
2. Gene...

600e4a3f3cc4532b83601fc8fbf022dbed419af8 authored over 8 years ago by Greg Wilson <[email protected]>
Preparing for June 2016 release

9c447b8e6ca87637b4ada4a6361c56d06cd8f0f8 authored over 8 years ago by Greg Wilson <[email protected]>
Fixing typo

15331a0242d2f4c7d7442718414ebf9b6a014999 authored over 9 years ago by Greg Wilson <[email protected]>
CSS cataloguing tool

6e037a57288bce7e8f97a11fde9ac8c5bb00fbf4 authored over 9 years ago by Greg Wilson <[email protected]>
Merge pull request #30 from twitwi/master

fix #26: updated bundled deck.js, including the fix on browsercast

d08536623b92371344df774be8218d9bf2d5e869 authored over 9 years ago by Raniere Silva <[email protected]>
fix #26: updated bundled deck.js, including the fix on browsercast

this bundle is used also for browsecast-less presentations
and thus browsercast should not unbin...

8cc34be19c43d5814b2aa09f5e57a08b13f541f6 authored over 9 years ago by Rémi Emonet <[email protected]>
Merge branch 'styles-compatible' into new-style

381ddabbe07ab8ffe63738ba52bc9dabbd7732fd authored over 9 years ago by Raniere Silva <[email protected]>
Merge branch 'style-img-responsive' into new-style

b42f539e36d6adb3460290d7efde7b931e2967d7 authored over 9 years ago by Raniere Silva <[email protected]>
Merge branch 'upgrade-bootstrap' into new-style

bb6f0f209e23365ac5b0ae1c9f853d47e93ee58d authored over 9 years ago by Raniere Silva <[email protected]>
Merge pull request #24 from fmichonneau/merge-badge-classes

consolidate badge classes to swc.css

a3b57313edf793386d3fb7604afeda5f6ad187c3 authored over 9 years ago by Raniere Silva <[email protected]>